Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_14980 and MCAODC_14985 are separated by 270 nucleotides MCAODC_14985 and MCAODC_14990 overlap by 1 nucleotides MCAODC_14990 and MCAODC_14995 are separated by 7 nucleotides MCAODC_14995 and MCAODC_15000 are separated by 455 nucleotides MCAODC_15000 and gpA1 overlap by 4 nucleotides
MCAODC_14980: MCAODC_14980 - SAR-endolysin, at 2,928,341 to 2,928,874
_14980
MCAODC_14985: MCAODC_14985 - Phage antirepressor protein, at 2,929,145 to 2,929,714
_14985
MCAODC_14990: MCAODC_14990 - hypothetical protein, at 2,929,714 to 2,929,860
_14990
MCAODC_14995: MCAODC_14995 - lysis protein, at 2,929,868 to 2,930,335
_14995
MCAODC_15000: MCAODC_15000 - terminase, at 2,930,791 to 2,931,267
_15000
MCAODC_15005: gpA1 - terminase, at 2,931,264 to 2,933,387
gpA1
Position (kb)
2929
2930
2931 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2930.488 kb on + strand at 2930.723 kb on - strand at 2930.774 kb on + strand at 2930.774 kb on + strand at 2930.788 kb on + strand at 2930.789 kb on - strand at 2930.811 kb on + strand at 2930.907 kb on + strand, within MCAODC_15000 at 2930.907 kb on + strand, within MCAODC_15000 at 2931.006 kb on + strand, within MCAODC_15000 at 2931.016 kb on + strand, within MCAODC_15000 at 2931.017 kb on - strand, within MCAODC_15000 at 2931.039 kb on + strand, within MCAODC_15000 at 2931.040 kb on - strand, within MCAODC_15000 at 2931.116 kb on + strand, within MCAODC_15000 at 2931.117 kb on - strand, within MCAODC_15000 at 2931.117 kb on - strand, within MCAODC_15000 at 2931.192 kb on - strand, within MCAODC_15000
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,930,488 + -3.6 2,930,723 - -1.1 2,930,774 + -3.0 2,930,774 + +0.2 2,930,788 + +2.2 2,930,789 - -0.6 2,930,811 + -0.7 2,930,907 + MCAODC_15000 0.24 -0.0 2,930,907 + MCAODC_15000 0.24 +0.4 2,931,006 + MCAODC_15000 0.45 -0.9 2,931,016 + MCAODC_15000 0.47 +0.3 2,931,017 - MCAODC_15000 0.47 -0.9 2,931,039 + MCAODC_15000 0.52 +0.5 2,931,040 - MCAODC_15000 0.52 -1.4 2,931,116 + MCAODC_15000 0.68 -0.4 2,931,117 - MCAODC_15000 0.68 -0.2 2,931,117 - MCAODC_15000 0.68 +0.3 2,931,192 - MCAODC_15000 0.84 +2.8
Or see this region's nucleotide sequence