Strain Fitness in Escherichia coli ECRC101 around MCAODC_14475

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiQ and yeiP are separated by 213 nucleotidesyeiP and yeiW are separated by 154 nucleotidesyeiW and setB overlap by 4 nucleotides MCAODC_14465: yeiQ - Uncharacterized oxidoreductase YeiQ, at 2,845,080 to 2,846,555 yeiQ MCAODC_14470: yeiP - elongation factor P-like protein YeiP, at 2,846,769 to 2,847,341 yeiP MCAODC_14475: yeiW - UPF0153 protein YeiW, at 2,847,496 to 2,847,750 yeiW MCAODC_14480: setB - sugar efflux transporter SetB, at 2,847,747 to 2,848,928 setB Position (kb) 2847 2848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2846.508 kb on + strandat 2846.509 kb on - strandat 2846.509 kb on - strandat 2846.509 kb on - strandat 2846.540 kb on + strandat 2846.540 kb on + strandat 2846.588 kb on + strandat 2846.596 kb on + strandat 2846.678 kb on + strandat 2846.679 kb on - strandat 2846.701 kb on + strandat 2846.712 kb on + strandat 2846.743 kb on + strandat 2846.786 kb on + strandat 2846.787 kb on - strandat 2846.787 kb on - strandat 2846.833 kb on - strand, within yeiPat 2846.836 kb on + strand, within yeiPat 2846.836 kb on + strand, within yeiPat 2846.836 kb on + strand, within yeiPat 2846.837 kb on - strand, within yeiPat 2847.063 kb on - strand, within yeiPat 2847.063 kb on - strand, within yeiPat 2847.064 kb on + strand, within yeiPat 2847.072 kb on - strand, within yeiPat 2847.073 kb on + strand, within yeiPat 2847.073 kb on + strand, within yeiPat 2847.074 kb on - strand, within yeiPat 2847.098 kb on - strand, within yeiPat 2847.115 kb on + strand, within yeiPat 2847.115 kb on + strand, within yeiPat 2847.116 kb on - strand, within yeiPat 2847.131 kb on - strand, within yeiPat 2847.312 kb on - strandat 2847.388 kb on - strandat 2847.448 kb on + strandat 2847.448 kb on + strandat 2847.449 kb on - strandat 2847.495 kb on + strandat 2847.496 kb on - strandat 2847.496 kb on - strandat 2847.496 kb on - strandat 2847.553 kb on - strand, within yeiWat 2847.586 kb on - strand, within yeiWat 2847.759 kb on - strandat 2847.769 kb on - strandat 2847.895 kb on + strand, within setBat 2847.943 kb on + strand, within setBat 2847.944 kb on - strand, within setBat 2847.987 kb on + strand, within setBat 2847.988 kb on - strand, within setBat 2848.078 kb on - strand, within setBat 2848.202 kb on + strand, within setBat 2848.202 kb on + strand, within setBat 2848.203 kb on - strand, within setBat 2848.206 kb on + strand, within setBat 2848.207 kb on - strand, within setBat 2848.225 kb on + strand, within setBat 2848.225 kb on + strand, within setBat 2848.225 kb on + strand, within setBat 2848.226 kb on - strand, within setBat 2848.226 kb on - strand, within setBat 2848.226 kb on - strand, within setBat 2848.226 kb on - strand, within setBat 2848.348 kb on - strand, within setBat 2848.402 kb on + strand, within setBat 2848.402 kb on + strand, within setBat 2848.403 kb on - strand, within setBat 2848.408 kb on - strand, within setBat 2848.432 kb on - strand, within setBat 2848.439 kb on - strand, within setBat 2848.485 kb on + strand, within setBat 2848.584 kb on - strand, within setBat 2848.616 kb on - strand, within setBat 2848.656 kb on + strand, within setB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,846,508 + -1.0
2,846,509 - +0.3
2,846,509 - +0.4
2,846,509 - +0.6
2,846,540 + +1.3
2,846,540 + +0.8
2,846,588 + +0.1
2,846,596 + +0.8
2,846,678 + -1.9
2,846,679 - +0.6
2,846,701 + +1.3
2,846,712 + +0.1
2,846,743 + +0.6
2,846,786 + +0.8
2,846,787 - -1.2
2,846,787 - +0.5
2,846,833 - yeiP MCAODC_14470 0.11 -1.9
2,846,836 + yeiP MCAODC_14470 0.12 +1.2
2,846,836 + yeiP MCAODC_14470 0.12 +0.3
2,846,836 + yeiP MCAODC_14470 0.12 +0.4
2,846,837 - yeiP MCAODC_14470 0.12 -0.5
2,847,063 - yeiP MCAODC_14470 0.51 -0.7
2,847,063 - yeiP MCAODC_14470 0.51 +0.3
2,847,064 + yeiP MCAODC_14470 0.51 +0.6
2,847,072 - yeiP MCAODC_14470 0.53 +0.2
2,847,073 + yeiP MCAODC_14470 0.53 -1.9
2,847,073 + yeiP MCAODC_14470 0.53 -0.8
2,847,074 - yeiP MCAODC_14470 0.53 -1.6
2,847,098 - yeiP MCAODC_14470 0.57 -3.2
2,847,115 + yeiP MCAODC_14470 0.60 +1.8
2,847,115 + yeiP MCAODC_14470 0.60 -0.6
2,847,116 - yeiP MCAODC_14470 0.61 +2.2
2,847,131 - yeiP MCAODC_14470 0.63 +0.0
2,847,312 - -2.1
2,847,388 - +0.0
2,847,448 + +0.8
2,847,448 + -0.2
2,847,449 - -0.1
2,847,495 + +0.9
2,847,496 - +0.3
2,847,496 - -0.8
2,847,496 - -2.2
2,847,553 - yeiW MCAODC_14475 0.22 -1.4
2,847,586 - yeiW MCAODC_14475 0.35 +0.2
2,847,759 - +0.9
2,847,769 - +0.8
2,847,895 + setB MCAODC_14480 0.13 +0.1
2,847,943 + setB MCAODC_14480 0.17 -1.1
2,847,944 - setB MCAODC_14480 0.17 -1.8
2,847,987 + setB MCAODC_14480 0.20 +0.7
2,847,988 - setB MCAODC_14480 0.20 -1.4
2,848,078 - setB MCAODC_14480 0.28 +1.8
2,848,202 + setB MCAODC_14480 0.38 +0.1
2,848,202 + setB MCAODC_14480 0.38 +1.4
2,848,203 - setB MCAODC_14480 0.39 -1.5
2,848,206 + setB MCAODC_14480 0.39 +0.2
2,848,207 - setB MCAODC_14480 0.39 -1.3
2,848,225 + setB MCAODC_14480 0.40 -0.1
2,848,225 + setB MCAODC_14480 0.40 +0.0
2,848,225 + setB MCAODC_14480 0.40 +1.9
2,848,226 - setB MCAODC_14480 0.41 -0.2
2,848,226 - setB MCAODC_14480 0.41 +0.6
2,848,226 - setB MCAODC_14480 0.41 +1.7
2,848,226 - setB MCAODC_14480 0.41 -0.1
2,848,348 - setB MCAODC_14480 0.51 -2.2
2,848,402 + setB MCAODC_14480 0.55 +2.5
2,848,402 + setB MCAODC_14480 0.55 -0.2
2,848,403 - setB MCAODC_14480 0.55 +0.4
2,848,408 - setB MCAODC_14480 0.56 -1.3
2,848,432 - setB MCAODC_14480 0.58 -2.1
2,848,439 - setB MCAODC_14480 0.59 -1.4
2,848,485 + setB MCAODC_14480 0.62 +0.0
2,848,584 - setB MCAODC_14480 0.71 +0.8
2,848,616 - setB MCAODC_14480 0.74 -0.5
2,848,656 + setB MCAODC_14480 0.77 -2.4

Or see this region's nucleotide sequence