Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narP and yejO are separated by 319 nucleotides yejO and Pro_trna are separated by 100 nucleotides Pro_trna and yejM are separated by 74 nucleotides
MCAODC_14370: narP - nitrate/nitrite response regulator protein NarP, at 2,822,844 to 2,823,491
narP
MCAODC_14375: yejO - autotransporter YejO, at 2,823,811 to 2,826,402
yejO
MCAODC_14380: Pro_trna - tRNA-Pro(ggg), at 2,826,503 to 2,826,579
_trna
MCAODC_14385: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,826,654 to 2,828,414
yejM
Position (kb)
2823
2824
2825
2826
2827 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2822.846 kb on - strand at 2822.846 kb on - strand at 2822.916 kb on + strand, within narP at 2822.916 kb on + strand, within narP at 2822.927 kb on + strand, within narP at 2822.931 kb on + strand, within narP at 2822.932 kb on - strand, within narP at 2822.932 kb on - strand, within narP at 2822.937 kb on + strand, within narP at 2822.937 kb on + strand, within narP at 2822.938 kb on - strand, within narP at 2822.979 kb on - strand, within narP at 2823.078 kb on + strand, within narP at 2823.079 kb on - strand, within narP at 2823.079 kb on - strand, within narP at 2823.082 kb on + strand, within narP at 2823.082 kb on + strand, within narP at 2823.243 kb on - strand, within narP at 2823.243 kb on - strand, within narP at 2823.299 kb on + strand, within narP at 2823.300 kb on - strand, within narP at 2823.441 kb on - strand at 2823.441 kb on - strand at 2823.491 kb on + strand at 2823.492 kb on - strand at 2823.492 kb on - strand at 2823.492 kb on - strand at 2823.495 kb on - strand at 2823.523 kb on - strand at 2823.549 kb on + strand at 2823.578 kb on - strand at 2823.602 kb on - strand at 2823.699 kb on - strand at 2823.751 kb on - strand at 2823.756 kb on + strand at 2823.788 kb on + strand at 2823.875 kb on + strand at 2823.875 kb on + strand at 2823.876 kb on - strand at 2823.876 kb on - strand at 2823.876 kb on - strand at 2823.887 kb on + strand at 2823.888 kb on - strand at 2823.888 kb on - strand at 2823.911 kb on - strand at 2824.008 kb on + strand at 2824.026 kb on - strand at 2824.030 kb on - strand at 2824.030 kb on - strand at 2824.033 kb on - strand at 2824.036 kb on - strand at 2824.060 kb on + strand at 2824.146 kb on + strand, within yejO at 2824.166 kb on + strand, within yejO at 2824.167 kb on - strand, within yejO at 2824.399 kb on - strand, within yejO at 2824.462 kb on + strand, within yejO at 2824.464 kb on + strand, within yejO at 2824.464 kb on + strand, within yejO at 2824.467 kb on + strand, within yejO at 2824.475 kb on + strand, within yejO at 2824.479 kb on + strand, within yejO at 2824.490 kb on + strand, within yejO at 2824.530 kb on + strand, within yejO at 2824.585 kb on - strand, within yejO at 2824.659 kb on + strand, within yejO at 2824.660 kb on - strand, within yejO at 2824.665 kb on + strand, within yejO at 2824.765 kb on + strand, within yejO at 2824.797 kb on + strand, within yejO at 2824.797 kb on + strand, within yejO at 2824.799 kb on + strand, within yejO at 2824.804 kb on + strand, within yejO at 2824.804 kb on + strand, within yejO at 2824.804 kb on + strand, within yejO at 2824.917 kb on + strand, within yejO at 2824.988 kb on + strand, within yejO at 2825.094 kb on + strand, within yejO at 2825.134 kb on - strand, within yejO at 2825.191 kb on - strand, within yejO at 2825.231 kb on - strand, within yejO at 2825.346 kb on + strand, within yejO at 2825.347 kb on - strand, within yejO at 2825.352 kb on + strand, within yejO at 2825.352 kb on + strand, within yejO at 2825.352 kb on + strand, within yejO at 2825.353 kb on - strand, within yejO at 2825.388 kb on + strand, within yejO at 2825.425 kb on - strand, within yejO at 2825.434 kb on + strand, within yejO at 2825.434 kb on + strand, within yejO at 2825.435 kb on - strand, within yejO at 2825.435 kb on - strand, within yejO at 2825.436 kb on + strand, within yejO at 2825.436 kb on + strand, within yejO at 2825.436 kb on + strand, within yejO at 2825.436 kb on + strand, within yejO at 2825.436 kb on + strand, within yejO at 2825.460 kb on + strand, within yejO at 2825.460 kb on + strand, within yejO at 2825.461 kb on - strand, within yejO at 2825.543 kb on + strand, within yejO at 2825.543 kb on + strand, within yejO at 2825.588 kb on + strand, within yejO at 2825.588 kb on + strand, within yejO at 2825.588 kb on + strand, within yejO at 2825.589 kb on - strand, within yejO at 2825.631 kb on + strand, within yejO at 2825.811 kb on + strand, within yejO at 2825.811 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.815 kb on + strand, within yejO at 2825.816 kb on - strand, within yejO at 2825.816 kb on - strand, within yejO at 2825.816 kb on - strand, within yejO at 2825.818 kb on - strand, within yejO at 2825.860 kb on + strand, within yejO at 2825.860 kb on + strand, within yejO at 2825.860 kb on + strand, within yejO at 2825.860 kb on + strand, within yejO at 2825.860 kb on + strand, within yejO at 2825.861 kb on - strand, within yejO at 2825.919 kb on + strand, within yejO at 2825.945 kb on - strand, within yejO at 2825.949 kb on + strand, within yejO at 2825.949 kb on + strand, within yejO at 2826.019 kb on + strand, within yejO at 2826.019 kb on + strand, within yejO at 2826.058 kb on + strand, within yejO at 2826.107 kb on + strand, within yejO at 2826.131 kb on + strand, within yejO at 2826.136 kb on + strand, within yejO at 2826.137 kb on - strand, within yejO at 2826.202 kb on + strand at 2826.213 kb on + strand at 2826.214 kb on - strand at 2826.249 kb on + strand at 2826.337 kb on + strand at 2826.572 kb on - strand at 2826.572 kb on - strand at 2826.595 kb on + strand at 2826.596 kb on - strand at 2826.624 kb on - strand at 2826.646 kb on - strand at 2826.646 kb on - strand at 2826.687 kb on + strand at 2826.705 kb on + strand at 2826.742 kb on - strand at 2826.748 kb on + strand at 2826.749 kb on - strand at 2826.749 kb on - strand at 2826.749 kb on - strand at 2826.758 kb on - strand at 2826.762 kb on - strand at 2826.762 kb on - strand at 2826.838 kb on + strand, within yejM at 2826.906 kb on + strand, within yejM at 2826.907 kb on - strand, within yejM at 2826.907 kb on - strand, within yejM at 2826.907 kb on - strand, within yejM at 2826.960 kb on - strand, within yejM at 2826.960 kb on - strand, within yejM at 2826.963 kb on - strand, within yejM at 2826.963 kb on - strand, within yejM at 2827.077 kb on - strand, within yejM at 2827.077 kb on - strand, within yejM at 2827.088 kb on + strand, within yejM at 2827.169 kb on - strand, within yejM at 2827.169 kb on - strand, within yejM at 2827.209 kb on - strand, within yejM at 2827.209 kb on - strand, within yejM at 2827.212 kb on - strand, within yejM at 2827.258 kb on + strand, within yejM at 2827.314 kb on + strand, within yejM at 2827.315 kb on - strand, within yejM at 2827.368 kb on - strand, within yejM at 2827.387 kb on - strand, within yejM
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,822,846 - +1.7 2,822,846 - -1.7 2,822,916 + narP MCAODC_14370 0.11 +0.2 2,822,916 + narP MCAODC_14370 0.11 -2.2 2,822,927 + narP MCAODC_14370 0.13 +0.6 2,822,931 + narP MCAODC_14370 0.13 +2.2 2,822,932 - narP MCAODC_14370 0.14 -0.1 2,822,932 - narP MCAODC_14370 0.14 -0.3 2,822,937 + narP MCAODC_14370 0.14 +0.3 2,822,937 + narP MCAODC_14370 0.14 -1.4 2,822,938 - narP MCAODC_14370 0.15 +0.6 2,822,979 - narP MCAODC_14370 0.21 -0.0 2,823,078 + narP MCAODC_14370 0.36 +0.3 2,823,079 - narP MCAODC_14370 0.36 -2.6 2,823,079 - narP MCAODC_14370 0.36 -1.8 2,823,082 + narP MCAODC_14370 0.37 +0.6 2,823,082 + narP MCAODC_14370 0.37 +2.1 2,823,243 - narP MCAODC_14370 0.62 +0.3 2,823,243 - narP MCAODC_14370 0.62 -1.5 2,823,299 + narP MCAODC_14370 0.70 -1.4 2,823,300 - narP MCAODC_14370 0.70 +1.3 2,823,441 - -3.6 2,823,441 - -1.0 2,823,491 + -0.1 2,823,492 - +2.2 2,823,492 - +0.7 2,823,492 - -1.1 2,823,495 - +1.1 2,823,523 - -2.5 2,823,549 + -1.1 2,823,578 - +0.2 2,823,602 - -0.0 2,823,699 - -0.5 2,823,751 - -0.8 2,823,756 + +2.7 2,823,788 + -0.6 2,823,875 + +1.0 2,823,875 + +0.1 2,823,876 - +0.4 2,823,876 - -2.5 2,823,876 - -0.0 2,823,887 + -2.7 2,823,888 - -0.6 2,823,888 - -3.3 2,823,911 - +0.6 2,824,008 + +1.7 2,824,026 - +0.7 2,824,030 - +2.6 2,824,030 - +0.6 2,824,033 - -0.4 2,824,036 - +0.6 2,824,060 + -1.2 2,824,146 + yejO MCAODC_14375 0.13 +0.1 2,824,166 + yejO MCAODC_14375 0.14 +0.9 2,824,167 - yejO MCAODC_14375 0.14 +1.2 2,824,399 - yejO MCAODC_14375 0.23 -1.0 2,824,462 + yejO MCAODC_14375 0.25 +0.5 2,824,464 + yejO MCAODC_14375 0.25 +0.2 2,824,464 + yejO MCAODC_14375 0.25 -1.9 2,824,467 + yejO MCAODC_14375 0.25 -2.9 2,824,475 + yejO MCAODC_14375 0.26 +1.2 2,824,479 + yejO MCAODC_14375 0.26 -0.5 2,824,490 + yejO MCAODC_14375 0.26 -0.6 2,824,530 + yejO MCAODC_14375 0.28 +0.4 2,824,585 - yejO MCAODC_14375 0.30 +0.0 2,824,659 + yejO MCAODC_14375 0.33 -0.7 2,824,660 - yejO MCAODC_14375 0.33 +0.6 2,824,665 + yejO MCAODC_14375 0.33 -1.6 2,824,765 + yejO MCAODC_14375 0.37 +1.3 2,824,797 + yejO MCAODC_14375 0.38 +1.4 2,824,797 + yejO MCAODC_14375 0.38 -0.1 2,824,799 + yejO MCAODC_14375 0.38 +0.6 2,824,804 + yejO MCAODC_14375 0.38 +0.5 2,824,804 + yejO MCAODC_14375 0.38 -3.8 2,824,804 + yejO MCAODC_14375 0.38 -1.5 2,824,917 + yejO MCAODC_14375 0.43 -1.9 2,824,988 + yejO MCAODC_14375 0.45 +0.5 2,825,094 + yejO MCAODC_14375 0.49 -2.0 2,825,134 - yejO MCAODC_14375 0.51 +1.7 2,825,191 - yejO MCAODC_14375 0.53 +0.4 2,825,231 - yejO MCAODC_14375 0.55 -1.9 2,825,346 + yejO MCAODC_14375 0.59 +0.3 2,825,347 - yejO MCAODC_14375 0.59 -1.2 2,825,352 + yejO MCAODC_14375 0.59 -0.4 2,825,352 + yejO MCAODC_14375 0.59 +0.8 2,825,352 + yejO MCAODC_14375 0.59 +0.6 2,825,353 - yejO MCAODC_14375 0.59 +0.1 2,825,388 + yejO MCAODC_14375 0.61 -1.4 2,825,425 - yejO MCAODC_14375 0.62 -0.4 2,825,434 + yejO MCAODC_14375 0.63 +0.6 2,825,434 + yejO MCAODC_14375 0.63 +2.5 2,825,435 - yejO MCAODC_14375 0.63 -1.5 2,825,435 - yejO MCAODC_14375 0.63 +1.8 2,825,436 + yejO MCAODC_14375 0.63 -1.5 2,825,436 + yejO MCAODC_14375 0.63 -1.3 2,825,436 + yejO MCAODC_14375 0.63 -1.6 2,825,436 + yejO MCAODC_14375 0.63 +1.1 2,825,436 + yejO MCAODC_14375 0.63 +1.7 2,825,460 + yejO MCAODC_14375 0.64 +0.0 2,825,460 + yejO MCAODC_14375 0.64 +0.7 2,825,461 - yejO MCAODC_14375 0.64 -2.3 2,825,543 + yejO MCAODC_14375 0.67 +0.8 2,825,543 + yejO MCAODC_14375 0.67 +0.8 2,825,588 + yejO MCAODC_14375 0.69 +1.7 2,825,588 + yejO MCAODC_14375 0.69 +0.7 2,825,588 + yejO MCAODC_14375 0.69 +0.6 2,825,589 - yejO MCAODC_14375 0.69 -0.5 2,825,631 + yejO MCAODC_14375 0.70 +0.2 2,825,811 + yejO MCAODC_14375 0.77 +2.1 2,825,811 + yejO MCAODC_14375 0.77 -0.6 2,825,815 + yejO MCAODC_14375 0.77 +0.2 2,825,815 + yejO MCAODC_14375 0.77 +0.8 2,825,815 + yejO MCAODC_14375 0.77 +0.4 2,825,815 + yejO MCAODC_14375 0.77 +0.1 2,825,815 + yejO MCAODC_14375 0.77 -1.2 2,825,815 + yejO MCAODC_14375 0.77 +0.5 2,825,815 + yejO MCAODC_14375 0.77 -0.6 2,825,816 - yejO MCAODC_14375 0.77 -1.3 2,825,816 - yejO MCAODC_14375 0.77 +0.6 2,825,816 - yejO MCAODC_14375 0.77 +1.5 2,825,818 - yejO MCAODC_14375 0.77 +1.1 2,825,860 + yejO MCAODC_14375 0.79 +1.1 2,825,860 + yejO MCAODC_14375 0.79 -0.1 2,825,860 + yejO MCAODC_14375 0.79 +0.9 2,825,860 + yejO MCAODC_14375 0.79 +1.1 2,825,860 + yejO MCAODC_14375 0.79 +0.8 2,825,861 - yejO MCAODC_14375 0.79 +1.2 2,825,919 + yejO MCAODC_14375 0.81 -0.4 2,825,945 - yejO MCAODC_14375 0.82 +1.6 2,825,949 + yejO MCAODC_14375 0.82 +0.5 2,825,949 + yejO MCAODC_14375 0.82 +0.7 2,826,019 + yejO MCAODC_14375 0.85 -0.5 2,826,019 + yejO MCAODC_14375 0.85 +0.5 2,826,058 + yejO MCAODC_14375 0.87 +0.6 2,826,107 + yejO MCAODC_14375 0.89 -0.4 2,826,131 + yejO MCAODC_14375 0.90 +0.9 2,826,136 + yejO MCAODC_14375 0.90 -0.2 2,826,137 - yejO MCAODC_14375 0.90 -1.1 2,826,202 + +0.1 2,826,213 + -0.0 2,826,214 - -2.7 2,826,249 + -1.5 2,826,337 + -1.1 2,826,572 - +1.0 2,826,572 - -0.2 2,826,595 + -1.0 2,826,596 - +0.9 2,826,624 - -0.2 2,826,646 - -3.2 2,826,646 - -1.0 2,826,687 + +1.2 2,826,705 + -2.4 2,826,742 - -1.5 2,826,748 + -0.1 2,826,749 - +1.1 2,826,749 - -2.7 2,826,749 - -0.7 2,826,758 - +1.4 2,826,762 - -0.0 2,826,762 - -2.8 2,826,838 + yejM MCAODC_14385 0.10 +1.7 2,826,906 + yejM MCAODC_14385 0.14 -3.6 2,826,907 - yejM MCAODC_14385 0.14 +0.2 2,826,907 - yejM MCAODC_14385 0.14 -0.9 2,826,907 - yejM MCAODC_14385 0.14 -0.2 2,826,960 - yejM MCAODC_14385 0.17 -0.5 2,826,960 - yejM MCAODC_14385 0.17 -0.7 2,826,963 - yejM MCAODC_14385 0.18 +0.8 2,826,963 - yejM MCAODC_14385 0.18 +0.7 2,827,077 - yejM MCAODC_14385 0.24 -1.7 2,827,077 - yejM MCAODC_14385 0.24 -0.1 2,827,088 + yejM MCAODC_14385 0.25 -2.2 2,827,169 - yejM MCAODC_14385 0.29 +0.9 2,827,169 - yejM MCAODC_14385 0.29 +1.0 2,827,209 - yejM MCAODC_14385 0.32 -0.2 2,827,209 - yejM MCAODC_14385 0.32 -0.1 2,827,212 - yejM MCAODC_14385 0.32 +0.1 2,827,258 + yejM MCAODC_14385 0.34 -2.3 2,827,314 + yejM MCAODC_14385 0.37 +1.3 2,827,315 - yejM MCAODC_14385 0.38 -1.1 2,827,368 - yejM MCAODC_14385 0.41 +1.3 2,827,387 - yejM MCAODC_14385 0.42 -3.1
Or see this region's nucleotide sequence