Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mqo and eco are separated by 149 nucleotides eco and MCAODC_14285 are separated by 133 nucleotides MCAODC_14285 and MCAODC_14290 are separated by 51 nucleotides MCAODC_14290 and napF are separated by 15 nucleotides napF and napD overlap by 11 nucleotides napD and napA overlap by 4 nucleotides
MCAODC_14275: mqo - malate dehydrogenase (quinone), at 2,807,979 to 2,809,625
mqo
MCAODC_14280: eco - serine protease inhibitor ecotin, at 2,809,775 to 2,810,263
eco
MCAODC_14285: MCAODC_14285 - hypothetical protein, at 2,810,397 to 2,810,561
_14285
MCAODC_14290: MCAODC_14290 - Orf 5, at 2,810,613 to 2,810,654
_14290
MCAODC_14295: napF - ferredoxin-type protein NapF, at 2,810,670 to 2,811,164
napF
MCAODC_14300: napD - chaperone NapD, at 2,811,154 to 2,811,417
napD
MCAODC_14305: napA - nitrate reductase catalytic subunit NapA, at 2,811,414 to 2,813,900
napA
Position (kb)
2810
2811 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2809.458 kb on + strand, within mqo at 2809.458 kb on + strand, within mqo at 2809.559 kb on + strand at 2809.559 kb on + strand at 2809.560 kb on - strand at 2809.623 kb on + strand at 2809.623 kb on + strand at 2809.623 kb on + strand at 2809.623 kb on + strand at 2809.624 kb on - strand at 2809.624 kb on - strand at 2809.624 kb on - strand at 2809.624 kb on - strand at 2809.624 kb on - strand at 2809.664 kb on + strand at 2809.665 kb on - strand at 2809.665 kb on - strand at 2809.673 kb on - strand at 2809.673 kb on - strand at 2809.714 kb on - strand at 2809.714 kb on - strand at 2809.749 kb on + strand at 2809.785 kb on - strand at 2809.825 kb on - strand, within eco at 2809.835 kb on + strand, within eco at 2809.835 kb on + strand, within eco at 2809.836 kb on - strand, within eco at 2809.850 kb on - strand, within eco at 2809.852 kb on - strand, within eco at 2809.852 kb on - strand, within eco at 2809.852 kb on - strand, within eco at 2809.852 kb on - strand, within eco at 2809.989 kb on + strand, within eco at 2809.989 kb on + strand, within eco at 2809.990 kb on - strand, within eco at 2809.992 kb on + strand, within eco at 2809.993 kb on - strand, within eco at 2809.993 kb on - strand, within eco at 2809.993 kb on - strand, within eco at 2809.993 kb on - strand, within eco at 2809.999 kb on - strand, within eco at 2810.249 kb on + strand at 2810.250 kb on - strand at 2810.288 kb on - strand at 2810.456 kb on - strand, within MCAODC_14285 at 2810.532 kb on + strand, within MCAODC_14285 at 2810.577 kb on + strand at 2810.577 kb on + strand at 2810.578 kb on - strand at 2810.580 kb on + strand at 2810.581 kb on - strand at 2810.606 kb on - strand at 2810.612 kb on + strand at 2810.622 kb on - strand, within MCAODC_14290 at 2810.698 kb on + strand at 2810.801 kb on + strand, within napF at 2811.014 kb on + strand, within napF at 2811.015 kb on - strand, within napF at 2811.036 kb on - strand, within napF at 2811.063 kb on + strand, within napF at 2811.064 kb on - strand, within napF at 2811.077 kb on + strand, within napF at 2811.077 kb on + strand, within napF at 2811.077 kb on + strand, within napF at 2811.077 kb on + strand, within napF at 2811.077 kb on + strand, within napF at 2811.080 kb on + strand, within napF at 2811.127 kb on + strand at 2811.136 kb on + strand at 2811.136 kb on + strand at 2811.163 kb on - strand at 2811.163 kb on - strand at 2811.350 kb on + strand, within napD at 2811.351 kb on - strand, within napD at 2811.380 kb on - strand, within napD at 2811.380 kb on - strand, within napD at 2811.380 kb on - strand, within napD at 2811.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,809,458 + mqo MCAODC_14275 0.90 -3.1 2,809,458 + mqo MCAODC_14275 0.90 -0.4 2,809,559 + +1.2 2,809,559 + -0.5 2,809,560 - +0.7 2,809,623 + +0.4 2,809,623 + -0.3 2,809,623 + +1.9 2,809,623 + +0.5 2,809,624 - +0.6 2,809,624 - -0.4 2,809,624 - -0.4 2,809,624 - -0.1 2,809,624 - -0.2 2,809,664 + +0.9 2,809,665 - -0.6 2,809,665 - +1.3 2,809,673 - +0.5 2,809,673 - -0.5 2,809,714 - +1.3 2,809,714 - +1.2 2,809,749 + -0.6 2,809,785 - +0.7 2,809,825 - eco MCAODC_14280 0.10 +4.0 2,809,835 + eco MCAODC_14280 0.12 +0.8 2,809,835 + eco MCAODC_14280 0.12 -0.9 2,809,836 - eco MCAODC_14280 0.12 -0.7 2,809,850 - eco MCAODC_14280 0.15 +0.5 2,809,852 - eco MCAODC_14280 0.16 +1.0 2,809,852 - eco MCAODC_14280 0.16 +0.3 2,809,852 - eco MCAODC_14280 0.16 +0.7 2,809,852 - eco MCAODC_14280 0.16 -0.2 2,809,989 + eco MCAODC_14280 0.44 +0.8 2,809,989 + eco MCAODC_14280 0.44 -2.9 2,809,990 - eco MCAODC_14280 0.44 +0.3 2,809,992 + eco MCAODC_14280 0.44 -0.8 2,809,993 - eco MCAODC_14280 0.45 +1.4 2,809,993 - eco MCAODC_14280 0.45 +1.2 2,809,993 - eco MCAODC_14280 0.45 -0.5 2,809,993 - eco MCAODC_14280 0.45 +1.3 2,809,999 - eco MCAODC_14280 0.46 +0.0 2,810,249 + -1.9 2,810,250 - -2.0 2,810,288 - +0.2 2,810,456 - MCAODC_14285 0.36 +0.4 2,810,532 + MCAODC_14285 0.82 -0.2 2,810,577 + -0.3 2,810,577 + -0.6 2,810,578 - +0.6 2,810,580 + -1.8 2,810,581 - -0.0 2,810,606 - +1.1 2,810,612 + +0.4 2,810,622 - MCAODC_14290 0.21 +1.7 2,810,698 + +0.6 2,810,801 + napF MCAODC_14295 0.26 +0.3 2,811,014 + napF MCAODC_14295 0.69 +0.8 2,811,015 - napF MCAODC_14295 0.70 +0.2 2,811,036 - napF MCAODC_14295 0.74 +1.4 2,811,063 + napF MCAODC_14295 0.79 +0.1 2,811,064 - napF MCAODC_14295 0.80 +0.3 2,811,077 + napF MCAODC_14295 0.82 +0.3 2,811,077 + napF MCAODC_14295 0.82 -1.1 2,811,077 + napF MCAODC_14295 0.82 +0.9 2,811,077 + napF MCAODC_14295 0.82 +0.7 2,811,077 + napF MCAODC_14295 0.82 +0.4 2,811,080 + napF MCAODC_14295 0.83 +0.9 2,811,127 + -2.0 2,811,136 + +1.8 2,811,136 + -0.3 2,811,163 - -0.7 2,811,163 - +1.2 2,811,350 + napD MCAODC_14300 0.74 +0.8 2,811,351 - napD MCAODC_14300 0.75 -2.1 2,811,380 - napD MCAODC_14300 0.86 -1.5 2,811,380 - napD MCAODC_14300 0.86 +0.9 2,811,380 - napD MCAODC_14300 0.86 +1.8 2,811,437 + +0.1
Or see this region's nucleotide sequence