Strain Fitness in Escherichia coli ECRC101 around MCAODC_14285

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmqo and eco are separated by 149 nucleotideseco and MCAODC_14285 are separated by 133 nucleotidesMCAODC_14285 and MCAODC_14290 are separated by 51 nucleotidesMCAODC_14290 and napF are separated by 15 nucleotidesnapF and napD overlap by 11 nucleotidesnapD and napA overlap by 4 nucleotides MCAODC_14275: mqo - malate dehydrogenase (quinone), at 2,807,979 to 2,809,625 mqo MCAODC_14280: eco - serine protease inhibitor ecotin, at 2,809,775 to 2,810,263 eco MCAODC_14285: MCAODC_14285 - hypothetical protein, at 2,810,397 to 2,810,561 _14285 MCAODC_14290: MCAODC_14290 - Orf 5, at 2,810,613 to 2,810,654 _14290 MCAODC_14295: napF - ferredoxin-type protein NapF, at 2,810,670 to 2,811,164 napF MCAODC_14300: napD - chaperone NapD, at 2,811,154 to 2,811,417 napD MCAODC_14305: napA - nitrate reductase catalytic subunit NapA, at 2,811,414 to 2,813,900 napA Position (kb) 2810 2811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2809.458 kb on + strand, within mqoat 2809.458 kb on + strand, within mqoat 2809.559 kb on + strandat 2809.559 kb on + strandat 2809.560 kb on - strandat 2809.623 kb on + strandat 2809.623 kb on + strandat 2809.623 kb on + strandat 2809.623 kb on + strandat 2809.624 kb on - strandat 2809.624 kb on - strandat 2809.624 kb on - strandat 2809.624 kb on - strandat 2809.624 kb on - strandat 2809.664 kb on + strandat 2809.665 kb on - strandat 2809.665 kb on - strandat 2809.673 kb on - strandat 2809.673 kb on - strandat 2809.714 kb on - strandat 2809.714 kb on - strandat 2809.749 kb on + strandat 2809.785 kb on - strandat 2809.825 kb on - strand, within ecoat 2809.835 kb on + strand, within ecoat 2809.835 kb on + strand, within ecoat 2809.836 kb on - strand, within ecoat 2809.850 kb on - strand, within ecoat 2809.852 kb on - strand, within ecoat 2809.852 kb on - strand, within ecoat 2809.852 kb on - strand, within ecoat 2809.852 kb on - strand, within ecoat 2809.989 kb on + strand, within ecoat 2809.989 kb on + strand, within ecoat 2809.990 kb on - strand, within ecoat 2809.992 kb on + strand, within ecoat 2809.993 kb on - strand, within ecoat 2809.993 kb on - strand, within ecoat 2809.993 kb on - strand, within ecoat 2809.993 kb on - strand, within ecoat 2809.999 kb on - strand, within ecoat 2810.249 kb on + strandat 2810.250 kb on - strandat 2810.288 kb on - strandat 2810.456 kb on - strand, within MCAODC_14285at 2810.532 kb on + strand, within MCAODC_14285at 2810.577 kb on + strandat 2810.577 kb on + strandat 2810.578 kb on - strandat 2810.580 kb on + strandat 2810.581 kb on - strandat 2810.606 kb on - strandat 2810.612 kb on + strandat 2810.622 kb on - strand, within MCAODC_14290at 2810.698 kb on + strandat 2810.801 kb on + strand, within napFat 2811.014 kb on + strand, within napFat 2811.015 kb on - strand, within napFat 2811.036 kb on - strand, within napFat 2811.063 kb on + strand, within napFat 2811.064 kb on - strand, within napFat 2811.077 kb on + strand, within napFat 2811.077 kb on + strand, within napFat 2811.077 kb on + strand, within napFat 2811.077 kb on + strand, within napFat 2811.077 kb on + strand, within napFat 2811.080 kb on + strand, within napFat 2811.127 kb on + strandat 2811.136 kb on + strandat 2811.136 kb on + strandat 2811.163 kb on - strandat 2811.163 kb on - strandat 2811.350 kb on + strand, within napDat 2811.351 kb on - strand, within napDat 2811.380 kb on - strand, within napDat 2811.380 kb on - strand, within napDat 2811.380 kb on - strand, within napDat 2811.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,809,458 + mqo MCAODC_14275 0.90 -3.1
2,809,458 + mqo MCAODC_14275 0.90 -0.4
2,809,559 + +1.2
2,809,559 + -0.5
2,809,560 - +0.7
2,809,623 + +0.4
2,809,623 + -0.3
2,809,623 + +1.9
2,809,623 + +0.5
2,809,624 - +0.6
2,809,624 - -0.4
2,809,624 - -0.4
2,809,624 - -0.1
2,809,624 - -0.2
2,809,664 + +0.9
2,809,665 - -0.6
2,809,665 - +1.3
2,809,673 - +0.5
2,809,673 - -0.5
2,809,714 - +1.3
2,809,714 - +1.2
2,809,749 + -0.6
2,809,785 - +0.7
2,809,825 - eco MCAODC_14280 0.10 +4.0
2,809,835 + eco MCAODC_14280 0.12 +0.8
2,809,835 + eco MCAODC_14280 0.12 -0.9
2,809,836 - eco MCAODC_14280 0.12 -0.7
2,809,850 - eco MCAODC_14280 0.15 +0.5
2,809,852 - eco MCAODC_14280 0.16 +1.0
2,809,852 - eco MCAODC_14280 0.16 +0.3
2,809,852 - eco MCAODC_14280 0.16 +0.7
2,809,852 - eco MCAODC_14280 0.16 -0.2
2,809,989 + eco MCAODC_14280 0.44 +0.8
2,809,989 + eco MCAODC_14280 0.44 -2.9
2,809,990 - eco MCAODC_14280 0.44 +0.3
2,809,992 + eco MCAODC_14280 0.44 -0.8
2,809,993 - eco MCAODC_14280 0.45 +1.4
2,809,993 - eco MCAODC_14280 0.45 +1.2
2,809,993 - eco MCAODC_14280 0.45 -0.5
2,809,993 - eco MCAODC_14280 0.45 +1.3
2,809,999 - eco MCAODC_14280 0.46 +0.0
2,810,249 + -1.9
2,810,250 - -2.0
2,810,288 - +0.2
2,810,456 - MCAODC_14285 0.36 +0.4
2,810,532 + MCAODC_14285 0.82 -0.2
2,810,577 + -0.3
2,810,577 + -0.6
2,810,578 - +0.6
2,810,580 + -1.8
2,810,581 - -0.0
2,810,606 - +1.1
2,810,612 + +0.4
2,810,622 - MCAODC_14290 0.21 +1.7
2,810,698 + +0.6
2,810,801 + napF MCAODC_14295 0.26 +0.3
2,811,014 + napF MCAODC_14295 0.69 +0.8
2,811,015 - napF MCAODC_14295 0.70 +0.2
2,811,036 - napF MCAODC_14295 0.74 +1.4
2,811,063 + napF MCAODC_14295 0.79 +0.1
2,811,064 - napF MCAODC_14295 0.80 +0.3
2,811,077 + napF MCAODC_14295 0.82 +0.3
2,811,077 + napF MCAODC_14295 0.82 -1.1
2,811,077 + napF MCAODC_14295 0.82 +0.9
2,811,077 + napF MCAODC_14295 0.82 +0.7
2,811,077 + napF MCAODC_14295 0.82 +0.4
2,811,080 + napF MCAODC_14295 0.83 +0.9
2,811,127 + -2.0
2,811,136 + +1.8
2,811,136 + -0.3
2,811,163 - -0.7
2,811,163 - +1.2
2,811,350 + napD MCAODC_14300 0.74 +0.8
2,811,351 - napD MCAODC_14300 0.75 -2.1
2,811,380 - napD MCAODC_14300 0.86 -1.5
2,811,380 - napD MCAODC_14300 0.86 +0.9
2,811,380 - napD MCAODC_14300 0.86 +1.8
2,811,437 + +0.1

Or see this region's nucleotide sequence