Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrdA and yfaL are separated by 695 nucleotides yfaL and ubiG are separated by 140 nucleotides
MCAODC_14170: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 2,774,787 to 2,777,072
nrdA
MCAODC_14175: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 2,777,768 to 2,781,520
yfaL
MCAODC_14180: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 2,781,661 to 2,782,383
ubiG
Position (kb)
2777
2778
2779
2780
2781
2782 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2777.267 kb on + strand at 2777.319 kb on - strand at 2777.319 kb on - strand at 2777.322 kb on + strand at 2777.372 kb on + strand at 2777.878 kb on + strand at 2777.878 kb on + strand at 2777.879 kb on - strand at 2778.034 kb on - strand at 2778.092 kb on + strand at 2778.205 kb on + strand, within yfaL at 2778.208 kb on + strand, within yfaL at 2778.314 kb on + strand, within yfaL at 2778.314 kb on + strand, within yfaL at 2778.351 kb on - strand, within yfaL at 2778.352 kb on + strand, within yfaL at 2778.406 kb on + strand, within yfaL at 2778.444 kb on + strand, within yfaL at 2778.448 kb on + strand, within yfaL at 2778.461 kb on - strand, within yfaL at 2778.466 kb on + strand, within yfaL at 2778.497 kb on + strand, within yfaL at 2778.497 kb on + strand, within yfaL at 2778.499 kb on + strand, within yfaL at 2778.499 kb on + strand, within yfaL at 2778.499 kb on + strand, within yfaL at 2778.500 kb on - strand, within yfaL at 2778.637 kb on + strand, within yfaL at 2778.638 kb on - strand, within yfaL at 2778.638 kb on - strand, within yfaL at 2778.641 kb on + strand, within yfaL at 2778.642 kb on - strand, within yfaL at 2778.662 kb on - strand, within yfaL at 2778.703 kb on + strand, within yfaL at 2778.730 kb on + strand, within yfaL at 2778.781 kb on + strand, within yfaL at 2778.781 kb on + strand, within yfaL at 2778.782 kb on - strand, within yfaL at 2778.782 kb on - strand, within yfaL at 2778.782 kb on - strand, within yfaL at 2778.782 kb on - strand, within yfaL at 2778.782 kb on - strand, within yfaL at 2778.790 kb on + strand, within yfaL at 2778.791 kb on - strand, within yfaL at 2778.905 kb on + strand, within yfaL at 2778.905 kb on + strand, within yfaL at 2778.931 kb on + strand, within yfaL at 2778.931 kb on + strand, within yfaL at 2778.931 kb on + strand, within yfaL at 2778.931 kb on + strand, within yfaL at 2778.932 kb on - strand, within yfaL at 2778.932 kb on - strand, within yfaL at 2778.935 kb on + strand, within yfaL at 2778.935 kb on + strand, within yfaL at 2778.954 kb on + strand, within yfaL at 2778.955 kb on - strand, within yfaL at 2779.017 kb on + strand, within yfaL at 2779.042 kb on + strand, within yfaL at 2779.115 kb on + strand, within yfaL at 2779.115 kb on + strand, within yfaL at 2779.115 kb on + strand, within yfaL at 2779.116 kb on - strand, within yfaL at 2779.116 kb on - strand, within yfaL at 2779.156 kb on + strand, within yfaL at 2779.156 kb on + strand, within yfaL at 2779.158 kb on + strand, within yfaL at 2779.158 kb on + strand, within yfaL at 2779.158 kb on + strand, within yfaL at 2779.159 kb on - strand, within yfaL at 2779.159 kb on - strand, within yfaL at 2779.294 kb on + strand, within yfaL at 2779.294 kb on + strand, within yfaL at 2779.295 kb on - strand, within yfaL at 2779.302 kb on - strand, within yfaL at 2779.302 kb on - strand, within yfaL at 2779.418 kb on + strand, within yfaL at 2779.419 kb on - strand, within yfaL at 2779.419 kb on - strand, within yfaL at 2779.472 kb on + strand, within yfaL at 2779.535 kb on + strand, within yfaL at 2779.536 kb on - strand, within yfaL at 2779.538 kb on - strand, within yfaL at 2779.538 kb on - strand, within yfaL at 2779.544 kb on + strand, within yfaL at 2779.544 kb on + strand, within yfaL at 2779.544 kb on + strand, within yfaL at 2779.558 kb on + strand, within yfaL at 2779.621 kb on + strand, within yfaL at 2779.747 kb on + strand, within yfaL at 2779.759 kb on + strand, within yfaL at 2779.799 kb on - strand, within yfaL at 2779.821 kb on + strand, within yfaL at 2779.865 kb on + strand, within yfaL at 2779.866 kb on - strand, within yfaL at 2779.907 kb on - strand, within yfaL at 2779.924 kb on + strand, within yfaL at 2779.925 kb on - strand, within yfaL at 2779.925 kb on - strand, within yfaL at 2779.943 kb on - strand, within yfaL at 2780.002 kb on + strand, within yfaL at 2780.002 kb on + strand, within yfaL at 2780.003 kb on - strand, within yfaL at 2780.003 kb on - strand, within yfaL at 2780.033 kb on - strand, within yfaL at 2780.090 kb on - strand, within yfaL at 2780.090 kb on - strand, within yfaL at 2780.092 kb on + strand, within yfaL at 2780.093 kb on - strand, within yfaL at 2780.158 kb on + strand, within yfaL at 2780.158 kb on + strand, within yfaL at 2780.158 kb on + strand, within yfaL at 2780.159 kb on - strand, within yfaL at 2780.222 kb on + strand, within yfaL at 2780.222 kb on + strand, within yfaL at 2780.223 kb on - strand, within yfaL at 2780.223 kb on - strand, within yfaL at 2780.225 kb on - strand, within yfaL at 2780.302 kb on + strand, within yfaL at 2780.305 kb on + strand, within yfaL at 2780.306 kb on - strand, within yfaL at 2780.332 kb on + strand, within yfaL at 2780.374 kb on + strand, within yfaL at 2780.455 kb on + strand, within yfaL at 2780.465 kb on + strand, within yfaL at 2780.466 kb on - strand, within yfaL at 2780.489 kb on - strand, within yfaL at 2780.489 kb on - strand, within yfaL at 2780.502 kb on - strand, within yfaL at 2780.521 kb on - strand, within yfaL at 2780.605 kb on + strand, within yfaL at 2780.605 kb on + strand, within yfaL at 2780.605 kb on + strand, within yfaL at 2780.605 kb on + strand, within yfaL at 2780.606 kb on - strand, within yfaL at 2780.683 kb on + strand, within yfaL at 2780.684 kb on - strand, within yfaL at 2780.684 kb on - strand, within yfaL at 2780.733 kb on + strand, within yfaL at 2780.754 kb on - strand, within yfaL at 2780.800 kb on + strand, within yfaL at 2780.800 kb on + strand, within yfaL at 2780.800 kb on + strand, within yfaL at 2780.801 kb on - strand, within yfaL at 2780.801 kb on - strand, within yfaL at 2781.027 kb on - strand, within yfaL at 2781.037 kb on + strand, within yfaL at 2781.037 kb on + strand, within yfaL at 2781.037 kb on + strand, within yfaL at 2781.078 kb on - strand, within yfaL at 2781.094 kb on + strand, within yfaL at 2781.241 kb on + strand at 2781.261 kb on + strand at 2781.295 kb on - strand at 2781.303 kb on + strand at 2781.304 kb on - strand at 2781.304 kb on - strand at 2781.315 kb on - strand at 2781.362 kb on - strand at 2781.418 kb on + strand at 2781.519 kb on - strand at 2781.539 kb on + strand at 2781.540 kb on - strand at 2781.540 kb on - strand at 2781.557 kb on - strand at 2781.590 kb on - strand at 2781.598 kb on + strand at 2781.599 kb on - strand at 2781.666 kb on + strand at 2782.394 kb on - strand at 2782.421 kb on - strand at 2782.422 kb on + strand at 2782.423 kb on - strand at 2782.423 kb on - strand at 2782.423 kb on - strand at 2782.442 kb on + strand at 2782.442 kb on + strand at 2782.443 kb on - strand at 2782.451 kb on + strand at 2782.451 kb on + strand at 2782.451 kb on + strand at 2782.451 kb on + strand at 2782.451 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,777,267 + -0.6 2,777,319 - -1.6 2,777,319 - +1.2 2,777,322 + +1.1 2,777,372 + +1.7 2,777,878 + +0.9 2,777,878 + +0.6 2,777,879 - +0.9 2,778,034 - -0.7 2,778,092 + +3.0 2,778,205 + yfaL MCAODC_14175 0.12 -0.3 2,778,208 + yfaL MCAODC_14175 0.12 +1.6 2,778,314 + yfaL MCAODC_14175 0.15 -0.7 2,778,314 + yfaL MCAODC_14175 0.15 -0.8 2,778,351 - yfaL MCAODC_14175 0.16 +0.7 2,778,352 + yfaL MCAODC_14175 0.16 -0.6 2,778,406 + yfaL MCAODC_14175 0.17 +0.3 2,778,444 + yfaL MCAODC_14175 0.18 +0.5 2,778,448 + yfaL MCAODC_14175 0.18 +2.4 2,778,461 - yfaL MCAODC_14175 0.18 +1.5 2,778,466 + yfaL MCAODC_14175 0.19 -3.3 2,778,497 + yfaL MCAODC_14175 0.19 -0.1 2,778,497 + yfaL MCAODC_14175 0.19 +1.6 2,778,499 + yfaL MCAODC_14175 0.19 +0.3 2,778,499 + yfaL MCAODC_14175 0.19 -3.3 2,778,499 + yfaL MCAODC_14175 0.19 +0.9 2,778,500 - yfaL MCAODC_14175 0.20 +0.3 2,778,637 + yfaL MCAODC_14175 0.23 +0.7 2,778,638 - yfaL MCAODC_14175 0.23 +0.8 2,778,638 - yfaL MCAODC_14175 0.23 +0.6 2,778,641 + yfaL MCAODC_14175 0.23 -0.1 2,778,642 - yfaL MCAODC_14175 0.23 -0.2 2,778,662 - yfaL MCAODC_14175 0.24 +0.6 2,778,703 + yfaL MCAODC_14175 0.25 +0.5 2,778,730 + yfaL MCAODC_14175 0.26 +0.1 2,778,781 + yfaL MCAODC_14175 0.27 +5.2 2,778,781 + yfaL MCAODC_14175 0.27 +0.8 2,778,782 - yfaL MCAODC_14175 0.27 -0.1 2,778,782 - yfaL MCAODC_14175 0.27 +0.8 2,778,782 - yfaL MCAODC_14175 0.27 -2.1 2,778,782 - yfaL MCAODC_14175 0.27 +1.0 2,778,782 - yfaL MCAODC_14175 0.27 -1.7 2,778,790 + yfaL MCAODC_14175 0.27 -3.6 2,778,791 - yfaL MCAODC_14175 0.27 -0.4 2,778,905 + yfaL MCAODC_14175 0.30 +0.0 2,778,905 + yfaL MCAODC_14175 0.30 +1.3 2,778,931 + yfaL MCAODC_14175 0.31 +2.6 2,778,931 + yfaL MCAODC_14175 0.31 +1.4 2,778,931 + yfaL MCAODC_14175 0.31 +0.9 2,778,931 + yfaL MCAODC_14175 0.31 +0.7 2,778,932 - yfaL MCAODC_14175 0.31 +1.4 2,778,932 - yfaL MCAODC_14175 0.31 -0.6 2,778,935 + yfaL MCAODC_14175 0.31 +0.2 2,778,935 + yfaL MCAODC_14175 0.31 +2.6 2,778,954 + yfaL MCAODC_14175 0.32 +1.0 2,778,955 - yfaL MCAODC_14175 0.32 -2.6 2,779,017 + yfaL MCAODC_14175 0.33 +3.0 2,779,042 + yfaL MCAODC_14175 0.34 -0.6 2,779,115 + yfaL MCAODC_14175 0.36 +1.5 2,779,115 + yfaL MCAODC_14175 0.36 +0.2 2,779,115 + yfaL MCAODC_14175 0.36 +1.0 2,779,116 - yfaL MCAODC_14175 0.36 +0.7 2,779,116 - yfaL MCAODC_14175 0.36 -0.2 2,779,156 + yfaL MCAODC_14175 0.37 +0.3 2,779,156 + yfaL MCAODC_14175 0.37 +0.9 2,779,158 + yfaL MCAODC_14175 0.37 +0.5 2,779,158 + yfaL MCAODC_14175 0.37 -1.1 2,779,158 + yfaL MCAODC_14175 0.37 -3.1 2,779,159 - yfaL MCAODC_14175 0.37 +0.6 2,779,159 - yfaL MCAODC_14175 0.37 +1.5 2,779,294 + yfaL MCAODC_14175 0.41 -0.0 2,779,294 + yfaL MCAODC_14175 0.41 -3.2 2,779,295 - yfaL MCAODC_14175 0.41 -2.0 2,779,302 - yfaL MCAODC_14175 0.41 +4.8 2,779,302 - yfaL MCAODC_14175 0.41 +0.1 2,779,418 + yfaL MCAODC_14175 0.44 -1.9 2,779,419 - yfaL MCAODC_14175 0.44 -1.7 2,779,419 - yfaL MCAODC_14175 0.44 +0.6 2,779,472 + yfaL MCAODC_14175 0.45 -1.0 2,779,535 + yfaL MCAODC_14175 0.47 +0.3 2,779,536 - yfaL MCAODC_14175 0.47 +1.0 2,779,538 - yfaL MCAODC_14175 0.47 +0.9 2,779,538 - yfaL MCAODC_14175 0.47 +0.3 2,779,544 + yfaL MCAODC_14175 0.47 +0.2 2,779,544 + yfaL MCAODC_14175 0.47 -1.2 2,779,544 + yfaL MCAODC_14175 0.47 -1.0 2,779,558 + yfaL MCAODC_14175 0.48 -0.4 2,779,621 + yfaL MCAODC_14175 0.49 -3.4 2,779,747 + yfaL MCAODC_14175 0.53 -2.6 2,779,759 + yfaL MCAODC_14175 0.53 -1.3 2,779,799 - yfaL MCAODC_14175 0.54 -0.7 2,779,821 + yfaL MCAODC_14175 0.55 -0.8 2,779,865 + yfaL MCAODC_14175 0.56 -0.3 2,779,866 - yfaL MCAODC_14175 0.56 +0.5 2,779,907 - yfaL MCAODC_14175 0.57 -2.6 2,779,924 + yfaL MCAODC_14175 0.57 +0.7 2,779,925 - yfaL MCAODC_14175 0.57 +0.5 2,779,925 - yfaL MCAODC_14175 0.57 +1.1 2,779,943 - yfaL MCAODC_14175 0.58 +3.3 2,780,002 + yfaL MCAODC_14175 0.60 -0.3 2,780,002 + yfaL MCAODC_14175 0.60 +1.7 2,780,003 - yfaL MCAODC_14175 0.60 +0.9 2,780,003 - yfaL MCAODC_14175 0.60 -0.5 2,780,033 - yfaL MCAODC_14175 0.60 +0.2 2,780,090 - yfaL MCAODC_14175 0.62 -0.1 2,780,090 - yfaL MCAODC_14175 0.62 +0.5 2,780,092 + yfaL MCAODC_14175 0.62 +0.0 2,780,093 - yfaL MCAODC_14175 0.62 +0.5 2,780,158 + yfaL MCAODC_14175 0.64 +0.1 2,780,158 + yfaL MCAODC_14175 0.64 -0.7 2,780,158 + yfaL MCAODC_14175 0.64 +1.2 2,780,159 - yfaL MCAODC_14175 0.64 -2.9 2,780,222 + yfaL MCAODC_14175 0.65 -0.3 2,780,222 + yfaL MCAODC_14175 0.65 +1.1 2,780,223 - yfaL MCAODC_14175 0.65 +1.5 2,780,223 - yfaL MCAODC_14175 0.65 +1.2 2,780,225 - yfaL MCAODC_14175 0.65 +1.6 2,780,302 + yfaL MCAODC_14175 0.68 +1.3 2,780,305 + yfaL MCAODC_14175 0.68 +0.2 2,780,306 - yfaL MCAODC_14175 0.68 -0.5 2,780,332 + yfaL MCAODC_14175 0.68 -3.1 2,780,374 + yfaL MCAODC_14175 0.69 -1.1 2,780,455 + yfaL MCAODC_14175 0.72 +0.9 2,780,465 + yfaL MCAODC_14175 0.72 +1.7 2,780,466 - yfaL MCAODC_14175 0.72 +1.1 2,780,489 - yfaL MCAODC_14175 0.73 -0.2 2,780,489 - yfaL MCAODC_14175 0.73 +0.9 2,780,502 - yfaL MCAODC_14175 0.73 -1.8 2,780,521 - yfaL MCAODC_14175 0.73 -0.9 2,780,605 + yfaL MCAODC_14175 0.76 -0.1 2,780,605 + yfaL MCAODC_14175 0.76 -2.2 2,780,605 + yfaL MCAODC_14175 0.76 +1.9 2,780,605 + yfaL MCAODC_14175 0.76 -0.5 2,780,606 - yfaL MCAODC_14175 0.76 -2.6 2,780,683 + yfaL MCAODC_14175 0.78 +1.7 2,780,684 - yfaL MCAODC_14175 0.78 +2.2 2,780,684 - yfaL MCAODC_14175 0.78 -0.2 2,780,733 + yfaL MCAODC_14175 0.79 -1.2 2,780,754 - yfaL MCAODC_14175 0.80 -0.4 2,780,800 + yfaL MCAODC_14175 0.81 -2.8 2,780,800 + yfaL MCAODC_14175 0.81 -1.8 2,780,800 + yfaL MCAODC_14175 0.81 +0.4 2,780,801 - yfaL MCAODC_14175 0.81 -1.8 2,780,801 - yfaL MCAODC_14175 0.81 -1.5 2,781,027 - yfaL MCAODC_14175 0.87 -0.1 2,781,037 + yfaL MCAODC_14175 0.87 -2.1 2,781,037 + yfaL MCAODC_14175 0.87 +0.2 2,781,037 + yfaL MCAODC_14175 0.87 -0.1 2,781,078 - yfaL MCAODC_14175 0.88 +2.4 2,781,094 + yfaL MCAODC_14175 0.89 -2.5 2,781,241 + +1.1 2,781,261 + -3.9 2,781,295 - +0.3 2,781,303 + +1.1 2,781,304 - +2.1 2,781,304 - +2.3 2,781,315 - +0.3 2,781,362 - +0.9 2,781,418 + +0.1 2,781,519 - -0.0 2,781,539 + +3.8 2,781,540 - +1.2 2,781,540 - +0.7 2,781,557 - +0.8 2,781,590 - -0.4 2,781,598 + +1.5 2,781,599 - +1.6 2,781,666 + -1.3 2,782,394 - -0.8 2,782,421 - +0.1 2,782,422 + +1.3 2,782,423 - +0.7 2,782,423 - +0.5 2,782,423 - +0.3 2,782,442 + -0.2 2,782,442 + -1.4 2,782,443 - +0.4 2,782,451 + +0.2 2,782,451 + -3.2 2,782,451 + -0.1 2,782,451 + -1.4 2,782,451 + +1.9
Or see this region's nucleotide sequence