Strain Fitness in Escherichia coli ECRC101 around MCAODC_14170

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnrdB and yoaM overlap by 2 nucleotidesyoaM and nrdA are separated by 192 nucleotidesnrdA and yfaL are separated by 695 nucleotides MCAODC_14155: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 2,773,430 to 2,774,560 nrdB MCAODC_14160: yoaM - Protein YoaM, at 2,774,559 to 2,774,594 yoaM MCAODC_14170: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 2,774,787 to 2,777,072 nrdA MCAODC_14175: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 2,777,768 to 2,781,520 yfaL Position (kb) 2774 2775 2776 2777 2778Strain fitness (log2 ratio) -2 -1 0 1at 2774.642 kb on - strandat 2775.041 kb on - strand, within nrdAat 2776.640 kb on - strand, within nrdAat 2777.267 kb on + strandat 2777.319 kb on - strandat 2777.319 kb on - strandat 2777.322 kb on + strandat 2777.372 kb on + strandat 2777.878 kb on + strandat 2777.878 kb on + strandat 2777.879 kb on - strandat 2778.034 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
2,774,642 - +0.7
2,775,041 - nrdA MCAODC_14170 0.11 -2.7
2,776,640 - nrdA MCAODC_14170 0.81 -2.6
2,777,267 + -0.6
2,777,319 - -1.6
2,777,319 - +1.2
2,777,322 + +1.1
2,777,372 + +1.7
2,777,878 + +0.9
2,777,878 + +0.6
2,777,879 - +0.9
2,778,034 - -0.7

Or see this region's nucleotide sequence