Strain Fitness in Escherichia coli ECRC101 around MCAODC_14155

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinaA and yfaE are separated by 53 nucleotidesyfaE and nrdB overlap by 1 nucleotidesnrdB and yoaM overlap by 2 nucleotidesyoaM and nrdA are separated by 192 nucleotides MCAODC_14145: inaA - lipopolysaccharide kinase InaA, at 2,772,472 to 2,773,122 inaA MCAODC_14150: yfaE - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 2,773,176 to 2,773,430 yfaE MCAODC_14155: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 2,773,430 to 2,774,560 nrdB MCAODC_14160: yoaM - Protein YoaM, at 2,774,559 to 2,774,594 yoaM MCAODC_14170: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 2,774,787 to 2,777,072 nrdA Position (kb) 2773 2774 2775Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2772.431 kb on + strandat 2772.431 kb on + strandat 2772.431 kb on + strandat 2772.431 kb on + strandat 2772.431 kb on + strandat 2772.431 kb on + strandat 2772.431 kb on + strandat 2772.433 kb on + strandat 2772.433 kb on + strandat 2772.471 kb on + strandat 2772.543 kb on + strand, within inaAat 2772.543 kb on + strand, within inaAat 2772.544 kb on - strand, within inaAat 2772.547 kb on + strand, within inaAat 2772.602 kb on + strand, within inaAat 2772.604 kb on + strand, within inaAat 2772.604 kb on + strand, within inaAat 2772.605 kb on - strand, within inaAat 2772.605 kb on - strand, within inaAat 2772.608 kb on + strand, within inaAat 2772.609 kb on - strand, within inaAat 2772.686 kb on + strand, within inaAat 2772.687 kb on - strand, within inaAat 2772.687 kb on - strand, within inaAat 2772.690 kb on + strand, within inaAat 2772.789 kb on + strand, within inaAat 2772.789 kb on + strand, within inaAat 2772.820 kb on + strand, within inaAat 2772.857 kb on + strand, within inaAat 2772.907 kb on - strand, within inaAat 2772.934 kb on + strand, within inaAat 2772.934 kb on + strand, within inaAat 2772.934 kb on + strand, within inaAat 2772.934 kb on + strand, within inaAat 2772.945 kb on + strand, within inaAat 2772.966 kb on + strand, within inaAat 2773.032 kb on + strand, within inaAat 2773.105 kb on + strandat 2773.111 kb on + strandat 2773.111 kb on + strandat 2773.112 kb on - strandat 2773.112 kb on - strandat 2773.142 kb on - strandat 2773.147 kb on + strandat 2773.169 kb on + strandat 2773.242 kb on - strand, within yfaEat 2773.328 kb on - strand, within yfaEat 2774.642 kb on - strandat 2775.041 kb on - strand, within nrdA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,772,431 + -3.2
2,772,431 + -2.8
2,772,431 + -0.6
2,772,431 + -0.2
2,772,431 + +0.4
2,772,431 + +0.8
2,772,431 + +0.5
2,772,433 + +0.2
2,772,433 + +0.5
2,772,471 + +0.2
2,772,543 + inaA MCAODC_14145 0.11 +1.6
2,772,543 + inaA MCAODC_14145 0.11 +0.2
2,772,544 - inaA MCAODC_14145 0.11 +0.2
2,772,547 + inaA MCAODC_14145 0.12 -0.2
2,772,602 + inaA MCAODC_14145 0.20 +1.2
2,772,604 + inaA MCAODC_14145 0.20 -1.2
2,772,604 + inaA MCAODC_14145 0.20 +0.5
2,772,605 - inaA MCAODC_14145 0.20 -0.5
2,772,605 - inaA MCAODC_14145 0.20 -2.4
2,772,608 + inaA MCAODC_14145 0.21 -0.6
2,772,609 - inaA MCAODC_14145 0.21 -1.5
2,772,686 + inaA MCAODC_14145 0.33 +1.6
2,772,687 - inaA MCAODC_14145 0.33 -1.1
2,772,687 - inaA MCAODC_14145 0.33 +0.8
2,772,690 + inaA MCAODC_14145 0.33 +0.5
2,772,789 + inaA MCAODC_14145 0.49 +0.5
2,772,789 + inaA MCAODC_14145 0.49 -0.3
2,772,820 + inaA MCAODC_14145 0.53 -0.3
2,772,857 + inaA MCAODC_14145 0.59 +1.2
2,772,907 - inaA MCAODC_14145 0.67 +0.4
2,772,934 + inaA MCAODC_14145 0.71 +1.4
2,772,934 + inaA MCAODC_14145 0.71 +0.7
2,772,934 + inaA MCAODC_14145 0.71 -0.2
2,772,934 + inaA MCAODC_14145 0.71 -3.4
2,772,945 + inaA MCAODC_14145 0.73 -4.4
2,772,966 + inaA MCAODC_14145 0.76 +0.3
2,773,032 + inaA MCAODC_14145 0.86 -0.8
2,773,105 + +0.2
2,773,111 + +0.3
2,773,111 + +0.4
2,773,112 - -0.4
2,773,112 - -0.5
2,773,142 - +0.0
2,773,147 + -2.2
2,773,169 + -0.2
2,773,242 - yfaE MCAODC_14150 0.26 +0.5
2,773,328 - yfaE MCAODC_14150 0.60 +0.7
2,774,642 - +0.7
2,775,041 - nrdA MCAODC_14170 0.11 -2.7

Or see this region's nucleotide sequence