Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt inaA and yfaE are separated by 53 nucleotides yfaE and nrdB overlap by 1 nucleotides nrdB and yoaM overlap by 2 nucleotides yoaM and nrdA are separated by 192 nucleotides
MCAODC_14145: inaA - lipopolysaccharide kinase InaA, at 2,772,472 to 2,773,122
inaA
MCAODC_14150: yfaE - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 2,773,176 to 2,773,430
yfaE
MCAODC_14155: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 2,773,430 to 2,774,560
nrdB
MCAODC_14160: yoaM - Protein YoaM, at 2,774,559 to 2,774,594
yoaM
MCAODC_14170: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 2,774,787 to 2,777,072
nrdA
Position (kb)
2773
2774
2775 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.433 kb on + strand at 2772.433 kb on + strand at 2772.471 kb on + strand at 2772.543 kb on + strand, within inaA at 2772.543 kb on + strand, within inaA at 2772.544 kb on - strand, within inaA at 2772.547 kb on + strand, within inaA at 2772.602 kb on + strand, within inaA at 2772.604 kb on + strand, within inaA at 2772.604 kb on + strand, within inaA at 2772.605 kb on - strand, within inaA at 2772.605 kb on - strand, within inaA at 2772.608 kb on + strand, within inaA at 2772.609 kb on - strand, within inaA at 2772.686 kb on + strand, within inaA at 2772.687 kb on - strand, within inaA at 2772.687 kb on - strand, within inaA at 2772.690 kb on + strand, within inaA at 2772.789 kb on + strand, within inaA at 2772.789 kb on + strand, within inaA at 2772.820 kb on + strand, within inaA at 2772.857 kb on + strand, within inaA at 2772.907 kb on - strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.945 kb on + strand, within inaA at 2772.966 kb on + strand, within inaA at 2773.032 kb on + strand, within inaA at 2773.105 kb on + strand at 2773.111 kb on + strand at 2773.111 kb on + strand at 2773.112 kb on - strand at 2773.112 kb on - strand at 2773.142 kb on - strand at 2773.147 kb on + strand at 2773.169 kb on + strand at 2773.242 kb on - strand, within yfaE at 2773.328 kb on - strand, within yfaE at 2774.642 kb on - strand at 2775.041 kb on - strand, within nrdA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,772,431 + -3.2 2,772,431 + -2.8 2,772,431 + -0.6 2,772,431 + -0.2 2,772,431 + +0.4 2,772,431 + +0.8 2,772,431 + +0.5 2,772,433 + +0.2 2,772,433 + +0.5 2,772,471 + +0.2 2,772,543 + inaA MCAODC_14145 0.11 +1.6 2,772,543 + inaA MCAODC_14145 0.11 +0.2 2,772,544 - inaA MCAODC_14145 0.11 +0.2 2,772,547 + inaA MCAODC_14145 0.12 -0.2 2,772,602 + inaA MCAODC_14145 0.20 +1.2 2,772,604 + inaA MCAODC_14145 0.20 -1.2 2,772,604 + inaA MCAODC_14145 0.20 +0.5 2,772,605 - inaA MCAODC_14145 0.20 -0.5 2,772,605 - inaA MCAODC_14145 0.20 -2.4 2,772,608 + inaA MCAODC_14145 0.21 -0.6 2,772,609 - inaA MCAODC_14145 0.21 -1.5 2,772,686 + inaA MCAODC_14145 0.33 +1.6 2,772,687 - inaA MCAODC_14145 0.33 -1.1 2,772,687 - inaA MCAODC_14145 0.33 +0.8 2,772,690 + inaA MCAODC_14145 0.33 +0.5 2,772,789 + inaA MCAODC_14145 0.49 +0.5 2,772,789 + inaA MCAODC_14145 0.49 -0.3 2,772,820 + inaA MCAODC_14145 0.53 -0.3 2,772,857 + inaA MCAODC_14145 0.59 +1.2 2,772,907 - inaA MCAODC_14145 0.67 +0.4 2,772,934 + inaA MCAODC_14145 0.71 +1.4 2,772,934 + inaA MCAODC_14145 0.71 +0.7 2,772,934 + inaA MCAODC_14145 0.71 -0.2 2,772,934 + inaA MCAODC_14145 0.71 -3.4 2,772,945 + inaA MCAODC_14145 0.73 -4.4 2,772,966 + inaA MCAODC_14145 0.76 +0.3 2,773,032 + inaA MCAODC_14145 0.86 -0.8 2,773,105 + +0.2 2,773,111 + +0.3 2,773,111 + +0.4 2,773,112 - -0.4 2,773,112 - -0.5 2,773,142 - +0.0 2,773,147 + -2.2 2,773,169 + -0.2 2,773,242 - yfaE MCAODC_14150 0.26 +0.5 2,773,328 - yfaE MCAODC_14150 0.60 +0.7 2,774,642 - +0.7 2,775,041 - nrdA MCAODC_14170 0.11 -2.7
Or see this region's nucleotide sequence