Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araJ and inaA are separated by 80 nucleotides inaA and yfaE are separated by 53 nucleotides yfaE and nrdB overlap by 1 nucleotides
MCAODC_14140: araJ - MFS transporter, at 2,771,201 to 2,772,391
araJ
MCAODC_14145: inaA - lipopolysaccharide kinase InaA, at 2,772,472 to 2,773,122
inaA
MCAODC_14150: yfaE - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 2,773,176 to 2,773,430
yfaE
MCAODC_14155: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 2,773,430 to 2,774,560
nrdB
Position (kb)
2773
2774 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2772.268 kb on + strand, within araJ at 2772.268 kb on + strand, within araJ at 2772.268 kb on + strand, within araJ at 2772.303 kb on + strand at 2772.304 kb on - strand at 2772.307 kb on - strand at 2772.313 kb on - strand at 2772.330 kb on - strand at 2772.330 kb on - strand at 2772.392 kb on + strand at 2772.424 kb on - strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.431 kb on + strand at 2772.433 kb on + strand at 2772.433 kb on + strand at 2772.471 kb on + strand at 2772.543 kb on + strand, within inaA at 2772.543 kb on + strand, within inaA at 2772.544 kb on - strand, within inaA at 2772.547 kb on + strand, within inaA at 2772.602 kb on + strand, within inaA at 2772.604 kb on + strand, within inaA at 2772.604 kb on + strand, within inaA at 2772.605 kb on - strand, within inaA at 2772.605 kb on - strand, within inaA at 2772.608 kb on + strand, within inaA at 2772.609 kb on - strand, within inaA at 2772.686 kb on + strand, within inaA at 2772.687 kb on - strand, within inaA at 2772.687 kb on - strand, within inaA at 2772.690 kb on + strand, within inaA at 2772.789 kb on + strand, within inaA at 2772.789 kb on + strand, within inaA at 2772.820 kb on + strand, within inaA at 2772.857 kb on + strand, within inaA at 2772.907 kb on - strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.934 kb on + strand, within inaA at 2772.945 kb on + strand, within inaA at 2772.966 kb on + strand, within inaA at 2773.032 kb on + strand, within inaA at 2773.105 kb on + strand at 2773.111 kb on + strand at 2773.111 kb on + strand at 2773.112 kb on - strand at 2773.112 kb on - strand at 2773.142 kb on - strand at 2773.147 kb on + strand at 2773.169 kb on + strand at 2773.242 kb on - strand, within yfaE at 2773.328 kb on - strand, within yfaE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,772,268 + araJ MCAODC_14140 0.90 -0.3 2,772,268 + araJ MCAODC_14140 0.90 -0.2 2,772,268 + araJ MCAODC_14140 0.90 -0.5 2,772,303 + -2.6 2,772,304 - -1.5 2,772,307 - -2.2 2,772,313 - +2.2 2,772,330 - -1.9 2,772,330 - +1.0 2,772,392 + +2.9 2,772,424 - -0.2 2,772,431 + -3.2 2,772,431 + -2.8 2,772,431 + -0.6 2,772,431 + -0.2 2,772,431 + +0.4 2,772,431 + +0.8 2,772,431 + +0.5 2,772,433 + +0.2 2,772,433 + +0.5 2,772,471 + +0.2 2,772,543 + inaA MCAODC_14145 0.11 +1.6 2,772,543 + inaA MCAODC_14145 0.11 +0.2 2,772,544 - inaA MCAODC_14145 0.11 +0.2 2,772,547 + inaA MCAODC_14145 0.12 -0.2 2,772,602 + inaA MCAODC_14145 0.20 +1.2 2,772,604 + inaA MCAODC_14145 0.20 -1.2 2,772,604 + inaA MCAODC_14145 0.20 +0.5 2,772,605 - inaA MCAODC_14145 0.20 -0.5 2,772,605 - inaA MCAODC_14145 0.20 -2.4 2,772,608 + inaA MCAODC_14145 0.21 -0.6 2,772,609 - inaA MCAODC_14145 0.21 -1.5 2,772,686 + inaA MCAODC_14145 0.33 +1.6 2,772,687 - inaA MCAODC_14145 0.33 -1.1 2,772,687 - inaA MCAODC_14145 0.33 +0.8 2,772,690 + inaA MCAODC_14145 0.33 +0.5 2,772,789 + inaA MCAODC_14145 0.49 +0.5 2,772,789 + inaA MCAODC_14145 0.49 -0.3 2,772,820 + inaA MCAODC_14145 0.53 -0.3 2,772,857 + inaA MCAODC_14145 0.59 +1.2 2,772,907 - inaA MCAODC_14145 0.67 +0.4 2,772,934 + inaA MCAODC_14145 0.71 +1.4 2,772,934 + inaA MCAODC_14145 0.71 +0.7 2,772,934 + inaA MCAODC_14145 0.71 -0.2 2,772,934 + inaA MCAODC_14145 0.71 -3.4 2,772,945 + inaA MCAODC_14145 0.73 -4.4 2,772,966 + inaA MCAODC_14145 0.76 +0.3 2,773,032 + inaA MCAODC_14145 0.86 -0.8 2,773,105 + +0.2 2,773,111 + +0.3 2,773,111 + +0.4 2,773,112 - -0.4 2,773,112 - -0.5 2,773,142 - +0.0 2,773,147 + -2.2 2,773,169 + -0.2 2,773,242 - yfaE MCAODC_14150 0.26 +0.5 2,773,328 - yfaE MCAODC_14150 0.60 +0.7
Or see this region's nucleotide sequence