Strain Fitness in Escherichia coli ECRC101 around MCAODC_14120

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglpT and glpQ are separated by 4 nucleotidesglpQ and MCAODC_14125 are separated by 223 nucleotides MCAODC_14115: glpT - glycerol-3-phosphate transporter, at 2,765,974 to 2,767,332 glpT MCAODC_14120: glpQ - glycerophosphodiester phosphodiesterase, at 2,767,337 to 2,768,413 glpQ MCAODC_14125: MCAODC_14125 - hypothetical protein, at 2,768,637 to 2,769,707 _14125 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2766.347 kb on + strand, within glpTat 2766.347 kb on + strand, within glpTat 2766.347 kb on + strand, within glpTat 2766.347 kb on + strand, within glpTat 2766.347 kb on + strand, within glpTat 2766.347 kb on + strand, within glpTat 2766.348 kb on - strand, within glpTat 2766.402 kb on + strand, within glpTat 2766.403 kb on - strand, within glpTat 2766.403 kb on - strand, within glpTat 2766.405 kb on + strand, within glpTat 2766.406 kb on - strand, within glpTat 2766.483 kb on + strand, within glpTat 2766.544 kb on + strand, within glpTat 2766.544 kb on + strand, within glpTat 2766.544 kb on + strand, within glpTat 2766.545 kb on - strand, within glpTat 2766.545 kb on - strand, within glpTat 2766.546 kb on + strand, within glpTat 2766.546 kb on + strand, within glpTat 2766.547 kb on - strand, within glpTat 2766.640 kb on + strand, within glpTat 2766.641 kb on - strand, within glpTat 2766.664 kb on + strand, within glpTat 2766.665 kb on - strand, within glpTat 2766.665 kb on - strand, within glpTat 2766.665 kb on - strand, within glpTat 2766.715 kb on + strand, within glpTat 2766.716 kb on - strand, within glpTat 2766.742 kb on + strand, within glpTat 2766.742 kb on + strand, within glpTat 2766.770 kb on - strand, within glpTat 2766.809 kb on - strand, within glpTat 2766.857 kb on - strand, within glpTat 2766.866 kb on - strand, within glpTat 2766.866 kb on - strand, within glpTat 2766.866 kb on - strand, within glpTat 2766.871 kb on + strand, within glpTat 2766.872 kb on - strand, within glpTat 2766.988 kb on + strand, within glpTat 2767.032 kb on + strand, within glpTat 2767.032 kb on + strand, within glpTat 2767.033 kb on - strand, within glpTat 2767.033 kb on - strand, within glpTat 2767.033 kb on - strand, within glpTat 2767.033 kb on - strand, within glpTat 2767.057 kb on + strand, within glpTat 2767.190 kb on - strand, within glpTat 2767.190 kb on - strand, within glpTat 2767.190 kb on - strand, within glpTat 2767.225 kb on - strandat 2767.384 kb on + strandat 2767.384 kb on + strandat 2767.384 kb on + strandat 2767.384 kb on + strandat 2767.384 kb on + strandat 2767.385 kb on - strandat 2767.385 kb on - strandat 2767.386 kb on + strandat 2767.386 kb on + strandat 2767.387 kb on - strandat 2767.387 kb on - strandat 2767.387 kb on - strandat 2767.461 kb on - strand, within glpQat 2767.474 kb on + strand, within glpQat 2767.474 kb on + strand, within glpQat 2767.474 kb on + strand, within glpQat 2767.577 kb on + strand, within glpQat 2767.640 kb on + strand, within glpQat 2767.643 kb on + strand, within glpQat 2767.730 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.837 kb on + strand, within glpQat 2767.837 kb on + strand, within glpQat 2767.841 kb on + strand, within glpQat 2767.841 kb on + strand, within glpQat 2767.842 kb on - strand, within glpQat 2767.842 kb on - strand, within glpQat 2767.922 kb on + strand, within glpQat 2767.923 kb on - strand, within glpQat 2767.923 kb on - strand, within glpQat 2767.988 kb on - strand, within glpQat 2768.034 kb on + strand, within glpQat 2768.048 kb on + strand, within glpQat 2768.108 kb on + strand, within glpQat 2768.182 kb on + strand, within glpQat 2768.263 kb on - strand, within glpQat 2768.274 kb on - strand, within glpQat 2768.325 kb on + strandat 2768.325 kb on + strandat 2768.327 kb on + strandat 2768.328 kb on - strandat 2768.355 kb on + strandat 2768.465 kb on - strandat 2768.594 kb on - strandat 2768.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,766,347 + glpT MCAODC_14115 0.27 -1.2
2,766,347 + glpT MCAODC_14115 0.27 -1.2
2,766,347 + glpT MCAODC_14115 0.27 -0.2
2,766,347 + glpT MCAODC_14115 0.27 -1.2
2,766,347 + glpT MCAODC_14115 0.27 -3.7
2,766,347 + glpT MCAODC_14115 0.27 +1.9
2,766,348 - glpT MCAODC_14115 0.28 -1.7
2,766,402 + glpT MCAODC_14115 0.31 -1.1
2,766,403 - glpT MCAODC_14115 0.32 +0.4
2,766,403 - glpT MCAODC_14115 0.32 +1.7
2,766,405 + glpT MCAODC_14115 0.32 +1.3
2,766,406 - glpT MCAODC_14115 0.32 -0.2
2,766,483 + glpT MCAODC_14115 0.37 +0.1
2,766,544 + glpT MCAODC_14115 0.42 -0.1
2,766,544 + glpT MCAODC_14115 0.42 -0.8
2,766,544 + glpT MCAODC_14115 0.42 -0.7
2,766,545 - glpT MCAODC_14115 0.42 +0.5
2,766,545 - glpT MCAODC_14115 0.42 -0.1
2,766,546 + glpT MCAODC_14115 0.42 -1.2
2,766,546 + glpT MCAODC_14115 0.42 +0.5
2,766,547 - glpT MCAODC_14115 0.42 -2.5
2,766,640 + glpT MCAODC_14115 0.49 +0.6
2,766,641 - glpT MCAODC_14115 0.49 +1.0
2,766,664 + glpT MCAODC_14115 0.51 +2.1
2,766,665 - glpT MCAODC_14115 0.51 +0.3
2,766,665 - glpT MCAODC_14115 0.51 -2.9
2,766,665 - glpT MCAODC_14115 0.51 +0.1
2,766,715 + glpT MCAODC_14115 0.55 +1.1
2,766,716 - glpT MCAODC_14115 0.55 +0.9
2,766,742 + glpT MCAODC_14115 0.57 +0.4
2,766,742 + glpT MCAODC_14115 0.57 -1.3
2,766,770 - glpT MCAODC_14115 0.59 -0.8
2,766,809 - glpT MCAODC_14115 0.61 -0.2
2,766,857 - glpT MCAODC_14115 0.65 +0.8
2,766,866 - glpT MCAODC_14115 0.66 +1.7
2,766,866 - glpT MCAODC_14115 0.66 -0.1
2,766,866 - glpT MCAODC_14115 0.66 +1.6
2,766,871 + glpT MCAODC_14115 0.66 +0.6
2,766,872 - glpT MCAODC_14115 0.66 -0.3
2,766,988 + glpT MCAODC_14115 0.75 -1.0
2,767,032 + glpT MCAODC_14115 0.78 +0.8
2,767,032 + glpT MCAODC_14115 0.78 +2.5
2,767,033 - glpT MCAODC_14115 0.78 -1.3
2,767,033 - glpT MCAODC_14115 0.78 +0.2
2,767,033 - glpT MCAODC_14115 0.78 +3.8
2,767,033 - glpT MCAODC_14115 0.78 +0.6
2,767,057 + glpT MCAODC_14115 0.80 -1.4
2,767,190 - glpT MCAODC_14115 0.89 +0.7
2,767,190 - glpT MCAODC_14115 0.89 +3.5
2,767,190 - glpT MCAODC_14115 0.89 +0.4
2,767,225 - +0.6
2,767,384 + -1.3
2,767,384 + -0.9
2,767,384 + -0.5
2,767,384 + +0.1
2,767,384 + -0.4
2,767,385 - +1.1
2,767,385 - -2.5
2,767,386 + +0.2
2,767,386 + +1.0
2,767,387 - +0.7
2,767,387 - -0.2
2,767,387 - -0.3
2,767,461 - glpQ MCAODC_14120 0.12 -2.7
2,767,474 + glpQ MCAODC_14120 0.13 -0.2
2,767,474 + glpQ MCAODC_14120 0.13 -1.1
2,767,474 + glpQ MCAODC_14120 0.13 +0.4
2,767,577 + glpQ MCAODC_14120 0.22 +1.0
2,767,640 + glpQ MCAODC_14120 0.28 +0.1
2,767,643 + glpQ MCAODC_14120 0.28 +1.8
2,767,730 + glpQ MCAODC_14120 0.36 +0.4
2,767,753 + glpQ MCAODC_14120 0.39 -0.1
2,767,753 + glpQ MCAODC_14120 0.39 -1.5
2,767,753 + glpQ MCAODC_14120 0.39 +0.4
2,767,753 + glpQ MCAODC_14120 0.39 -0.9
2,767,837 + glpQ MCAODC_14120 0.46 -3.2
2,767,837 + glpQ MCAODC_14120 0.46 -0.2
2,767,841 + glpQ MCAODC_14120 0.47 -1.9
2,767,841 + glpQ MCAODC_14120 0.47 -0.4
2,767,842 - glpQ MCAODC_14120 0.47 +1.5
2,767,842 - glpQ MCAODC_14120 0.47 -0.1
2,767,922 + glpQ MCAODC_14120 0.54 -0.1
2,767,923 - glpQ MCAODC_14120 0.54 +1.2
2,767,923 - glpQ MCAODC_14120 0.54 -0.8
2,767,988 - glpQ MCAODC_14120 0.60 -1.3
2,768,034 + glpQ MCAODC_14120 0.65 -0.1
2,768,048 + glpQ MCAODC_14120 0.66 +0.5
2,768,108 + glpQ MCAODC_14120 0.72 -0.7
2,768,182 + glpQ MCAODC_14120 0.78 +0.3
2,768,263 - glpQ MCAODC_14120 0.86 +1.0
2,768,274 - glpQ MCAODC_14120 0.87 -0.4
2,768,325 + -0.3
2,768,325 + +0.8
2,768,327 + +0.2
2,768,328 - -1.4
2,768,355 + +0.8
2,768,465 - -2.0
2,768,594 - -0.8
2,768,683 - -0.6

Or see this region's nucleotide sequence