Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glpT and glpQ are separated by 4 nucleotides glpQ and MCAODC_14125 are separated by 223 nucleotides
MCAODC_14115: glpT - glycerol-3-phosphate transporter, at 2,765,974 to 2,767,332
glpT
MCAODC_14120: glpQ - glycerophosphodiester phosphodiesterase, at 2,767,337 to 2,768,413
glpQ
MCAODC_14125: MCAODC_14125 - hypothetical protein, at 2,768,637 to 2,769,707
_14125
Position (kb)
2767
2768
2769 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2766.347 kb on + strand, within glpT at 2766.347 kb on + strand, within glpT at 2766.347 kb on + strand, within glpT at 2766.347 kb on + strand, within glpT at 2766.347 kb on + strand, within glpT at 2766.347 kb on + strand, within glpT at 2766.348 kb on - strand, within glpT at 2766.402 kb on + strand, within glpT at 2766.403 kb on - strand, within glpT at 2766.403 kb on - strand, within glpT at 2766.405 kb on + strand, within glpT at 2766.406 kb on - strand, within glpT at 2766.483 kb on + strand, within glpT at 2766.544 kb on + strand, within glpT at 2766.544 kb on + strand, within glpT at 2766.544 kb on + strand, within glpT at 2766.545 kb on - strand, within glpT at 2766.545 kb on - strand, within glpT at 2766.546 kb on + strand, within glpT at 2766.546 kb on + strand, within glpT at 2766.547 kb on - strand, within glpT at 2766.640 kb on + strand, within glpT at 2766.641 kb on - strand, within glpT at 2766.664 kb on + strand, within glpT at 2766.665 kb on - strand, within glpT at 2766.665 kb on - strand, within glpT at 2766.665 kb on - strand, within glpT at 2766.715 kb on + strand, within glpT at 2766.716 kb on - strand, within glpT at 2766.742 kb on + strand, within glpT at 2766.742 kb on + strand, within glpT at 2766.770 kb on - strand, within glpT at 2766.809 kb on - strand, within glpT at 2766.857 kb on - strand, within glpT at 2766.866 kb on - strand, within glpT at 2766.866 kb on - strand, within glpT at 2766.866 kb on - strand, within glpT at 2766.871 kb on + strand, within glpT at 2766.872 kb on - strand, within glpT at 2766.988 kb on + strand, within glpT at 2767.032 kb on + strand, within glpT at 2767.032 kb on + strand, within glpT at 2767.033 kb on - strand, within glpT at 2767.033 kb on - strand, within glpT at 2767.033 kb on - strand, within glpT at 2767.033 kb on - strand, within glpT at 2767.057 kb on + strand, within glpT at 2767.190 kb on - strand, within glpT at 2767.190 kb on - strand, within glpT at 2767.190 kb on - strand, within glpT at 2767.225 kb on - strand at 2767.384 kb on + strand at 2767.384 kb on + strand at 2767.384 kb on + strand at 2767.384 kb on + strand at 2767.384 kb on + strand at 2767.385 kb on - strand at 2767.385 kb on - strand at 2767.386 kb on + strand at 2767.386 kb on + strand at 2767.387 kb on - strand at 2767.387 kb on - strand at 2767.387 kb on - strand at 2767.461 kb on - strand, within glpQ at 2767.474 kb on + strand, within glpQ at 2767.474 kb on + strand, within glpQ at 2767.474 kb on + strand, within glpQ at 2767.577 kb on + strand, within glpQ at 2767.640 kb on + strand, within glpQ at 2767.643 kb on + strand, within glpQ at 2767.730 kb on + strand, within glpQ at 2767.753 kb on + strand, within glpQ at 2767.753 kb on + strand, within glpQ at 2767.753 kb on + strand, within glpQ at 2767.753 kb on + strand, within glpQ at 2767.837 kb on + strand, within glpQ at 2767.837 kb on + strand, within glpQ at 2767.841 kb on + strand, within glpQ at 2767.841 kb on + strand, within glpQ at 2767.842 kb on - strand, within glpQ at 2767.842 kb on - strand, within glpQ at 2767.922 kb on + strand, within glpQ at 2767.923 kb on - strand, within glpQ at 2767.923 kb on - strand, within glpQ at 2767.988 kb on - strand, within glpQ at 2768.034 kb on + strand, within glpQ at 2768.048 kb on + strand, within glpQ at 2768.108 kb on + strand, within glpQ at 2768.182 kb on + strand, within glpQ at 2768.263 kb on - strand, within glpQ at 2768.274 kb on - strand, within glpQ at 2768.325 kb on + strand at 2768.325 kb on + strand at 2768.327 kb on + strand at 2768.328 kb on - strand at 2768.355 kb on + strand at 2768.465 kb on - strand at 2768.594 kb on - strand at 2768.683 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,766,347 + glpT MCAODC_14115 0.27 -1.2 2,766,347 + glpT MCAODC_14115 0.27 -1.2 2,766,347 + glpT MCAODC_14115 0.27 -0.2 2,766,347 + glpT MCAODC_14115 0.27 -1.2 2,766,347 + glpT MCAODC_14115 0.27 -3.7 2,766,347 + glpT MCAODC_14115 0.27 +1.9 2,766,348 - glpT MCAODC_14115 0.28 -1.7 2,766,402 + glpT MCAODC_14115 0.31 -1.1 2,766,403 - glpT MCAODC_14115 0.32 +0.4 2,766,403 - glpT MCAODC_14115 0.32 +1.7 2,766,405 + glpT MCAODC_14115 0.32 +1.3 2,766,406 - glpT MCAODC_14115 0.32 -0.2 2,766,483 + glpT MCAODC_14115 0.37 +0.1 2,766,544 + glpT MCAODC_14115 0.42 -0.1 2,766,544 + glpT MCAODC_14115 0.42 -0.8 2,766,544 + glpT MCAODC_14115 0.42 -0.7 2,766,545 - glpT MCAODC_14115 0.42 +0.5 2,766,545 - glpT MCAODC_14115 0.42 -0.1 2,766,546 + glpT MCAODC_14115 0.42 -1.2 2,766,546 + glpT MCAODC_14115 0.42 +0.5 2,766,547 - glpT MCAODC_14115 0.42 -2.5 2,766,640 + glpT MCAODC_14115 0.49 +0.6 2,766,641 - glpT MCAODC_14115 0.49 +1.0 2,766,664 + glpT MCAODC_14115 0.51 +2.1 2,766,665 - glpT MCAODC_14115 0.51 +0.3 2,766,665 - glpT MCAODC_14115 0.51 -2.9 2,766,665 - glpT MCAODC_14115 0.51 +0.1 2,766,715 + glpT MCAODC_14115 0.55 +1.1 2,766,716 - glpT MCAODC_14115 0.55 +0.9 2,766,742 + glpT MCAODC_14115 0.57 +0.4 2,766,742 + glpT MCAODC_14115 0.57 -1.3 2,766,770 - glpT MCAODC_14115 0.59 -0.8 2,766,809 - glpT MCAODC_14115 0.61 -0.2 2,766,857 - glpT MCAODC_14115 0.65 +0.8 2,766,866 - glpT MCAODC_14115 0.66 +1.7 2,766,866 - glpT MCAODC_14115 0.66 -0.1 2,766,866 - glpT MCAODC_14115 0.66 +1.6 2,766,871 + glpT MCAODC_14115 0.66 +0.6 2,766,872 - glpT MCAODC_14115 0.66 -0.3 2,766,988 + glpT MCAODC_14115 0.75 -1.0 2,767,032 + glpT MCAODC_14115 0.78 +0.8 2,767,032 + glpT MCAODC_14115 0.78 +2.5 2,767,033 - glpT MCAODC_14115 0.78 -1.3 2,767,033 - glpT MCAODC_14115 0.78 +0.2 2,767,033 - glpT MCAODC_14115 0.78 +3.8 2,767,033 - glpT MCAODC_14115 0.78 +0.6 2,767,057 + glpT MCAODC_14115 0.80 -1.4 2,767,190 - glpT MCAODC_14115 0.89 +0.7 2,767,190 - glpT MCAODC_14115 0.89 +3.5 2,767,190 - glpT MCAODC_14115 0.89 +0.4 2,767,225 - +0.6 2,767,384 + -1.3 2,767,384 + -0.9 2,767,384 + -0.5 2,767,384 + +0.1 2,767,384 + -0.4 2,767,385 - +1.1 2,767,385 - -2.5 2,767,386 + +0.2 2,767,386 + +1.0 2,767,387 - +0.7 2,767,387 - -0.2 2,767,387 - -0.3 2,767,461 - glpQ MCAODC_14120 0.12 -2.7 2,767,474 + glpQ MCAODC_14120 0.13 -0.2 2,767,474 + glpQ MCAODC_14120 0.13 -1.1 2,767,474 + glpQ MCAODC_14120 0.13 +0.4 2,767,577 + glpQ MCAODC_14120 0.22 +1.0 2,767,640 + glpQ MCAODC_14120 0.28 +0.1 2,767,643 + glpQ MCAODC_14120 0.28 +1.8 2,767,730 + glpQ MCAODC_14120 0.36 +0.4 2,767,753 + glpQ MCAODC_14120 0.39 -0.1 2,767,753 + glpQ MCAODC_14120 0.39 -1.5 2,767,753 + glpQ MCAODC_14120 0.39 +0.4 2,767,753 + glpQ MCAODC_14120 0.39 -0.9 2,767,837 + glpQ MCAODC_14120 0.46 -3.2 2,767,837 + glpQ MCAODC_14120 0.46 -0.2 2,767,841 + glpQ MCAODC_14120 0.47 -1.9 2,767,841 + glpQ MCAODC_14120 0.47 -0.4 2,767,842 - glpQ MCAODC_14120 0.47 +1.5 2,767,842 - glpQ MCAODC_14120 0.47 -0.1 2,767,922 + glpQ MCAODC_14120 0.54 -0.1 2,767,923 - glpQ MCAODC_14120 0.54 +1.2 2,767,923 - glpQ MCAODC_14120 0.54 -0.8 2,767,988 - glpQ MCAODC_14120 0.60 -1.3 2,768,034 + glpQ MCAODC_14120 0.65 -0.1 2,768,048 + glpQ MCAODC_14120 0.66 +0.5 2,768,108 + glpQ MCAODC_14120 0.72 -0.7 2,768,182 + glpQ MCAODC_14120 0.78 +0.3 2,768,263 - glpQ MCAODC_14120 0.86 +1.0 2,768,274 - glpQ MCAODC_14120 0.87 -0.4 2,768,325 + -0.3 2,768,325 + +0.8 2,768,327 + +0.2 2,768,328 - -1.4 2,768,355 + +0.8 2,768,465 - -2.0 2,768,594 - -0.8 2,768,683 - -0.6
Or see this region's nucleotide sequence