Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qseF and glnB are separated by 60 nucleotides glnB and hmpA are separated by 44 nucleotides
MCAODC_12025: qseF - two-component system response regulator QseF/GlrR, at 2,375,796 to 2,377,130
qseF
MCAODC_12030: glnB - nitrogen regulatory protein P-II, at 2,377,191 to 2,377,529
glnB
MCAODC_12035: hmpA - NO-inducible flavohemoprotein, at 2,377,574 to 2,378,764
hmpA
Position (kb)
2377
2378 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2376.348 kb on - strand, within qseF at 2376.359 kb on + strand, within qseF at 2376.359 kb on + strand, within qseF at 2376.359 kb on + strand, within qseF at 2376.359 kb on + strand, within qseF at 2376.360 kb on - strand, within qseF at 2376.360 kb on - strand, within qseF at 2376.360 kb on - strand, within qseF at 2376.365 kb on + strand, within qseF at 2376.368 kb on + strand, within qseF at 2376.368 kb on + strand, within qseF at 2376.368 kb on + strand, within qseF at 2376.368 kb on + strand, within qseF at 2376.368 kb on + strand, within qseF at 2376.369 kb on - strand, within qseF at 2376.464 kb on - strand, within qseF at 2376.490 kb on + strand, within qseF at 2376.490 kb on + strand, within qseF at 2376.513 kb on - strand, within qseF at 2376.561 kb on - strand, within qseF at 2376.596 kb on + strand, within qseF at 2376.597 kb on - strand, within qseF at 2376.611 kb on + strand, within qseF at 2376.675 kb on + strand, within qseF at 2376.675 kb on + strand, within qseF at 2376.675 kb on + strand, within qseF at 2376.675 kb on + strand, within qseF at 2376.782 kb on + strand, within qseF at 2376.782 kb on + strand, within qseF at 2376.911 kb on + strand, within qseF at 2376.922 kb on + strand, within qseF at 2376.922 kb on + strand, within qseF at 2376.922 kb on + strand, within qseF at 2376.922 kb on + strand, within qseF at 2376.923 kb on - strand, within qseF at 2376.923 kb on - strand, within qseF at 2376.923 kb on - strand, within qseF at 2376.925 kb on + strand, within qseF at 2376.925 kb on + strand, within qseF at 2376.925 kb on + strand, within qseF at 2376.926 kb on - strand, within qseF at 2376.980 kb on + strand, within qseF at 2376.981 kb on - strand, within qseF at 2377.007 kb on + strand at 2377.075 kb on - strand at 2377.080 kb on + strand at 2377.080 kb on + strand at 2377.139 kb on + strand at 2377.139 kb on + strand at 2377.140 kb on - strand at 2377.146 kb on + strand at 2377.153 kb on - strand at 2377.187 kb on + strand at 2377.187 kb on + strand at 2377.187 kb on + strand at 2377.188 kb on - strand at 2377.214 kb on + strand at 2377.341 kb on + strand, within glnB at 2377.341 kb on + strand, within glnB at 2377.341 kb on + strand, within glnB at 2377.341 kb on + strand, within glnB at 2377.341 kb on + strand, within glnB at 2377.342 kb on - strand, within glnB at 2377.342 kb on - strand, within glnB at 2377.343 kb on + strand, within glnB at 2377.343 kb on + strand, within glnB at 2377.343 kb on + strand, within glnB at 2377.344 kb on - strand, within glnB at 2377.403 kb on + strand, within glnB at 2377.415 kb on + strand, within glnB at 2377.585 kb on + strand at 2377.605 kb on + strand at 2377.640 kb on + strand at 2377.641 kb on - strand at 2377.686 kb on + strand at 2377.765 kb on + strand, within hmpA at 2377.841 kb on - strand, within hmpA at 2378.010 kb on - strand, within hmpA at 2378.078 kb on + strand, within hmpA at 2378.110 kb on + strand, within hmpA at 2378.149 kb on - strand, within hmpA at 2378.312 kb on - strand, within hmpA at 2378.349 kb on + strand, within hmpA at 2378.371 kb on + strand, within hmpA at 2378.372 kb on - strand, within hmpA at 2378.375 kb on + strand, within hmpA at 2378.375 kb on + strand, within hmpA at 2378.375 kb on + strand, within hmpA at 2378.375 kb on + strand, within hmpA at 2378.376 kb on - strand, within hmpA at 2378.376 kb on - strand, within hmpA at 2378.376 kb on - strand, within hmpA at 2378.380 kb on + strand, within hmpA at 2378.387 kb on + strand, within hmpA at 2378.388 kb on - strand, within hmpA at 2378.394 kb on + strand, within hmpA at 2378.394 kb on + strand, within hmpA at 2378.395 kb on - strand, within hmpA at 2378.481 kb on + strand, within hmpA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,376,348 - qseF MCAODC_12025 0.41 -1.1 2,376,359 + qseF MCAODC_12025 0.42 +0.5 2,376,359 + qseF MCAODC_12025 0.42 -1.7 2,376,359 + qseF MCAODC_12025 0.42 +0.9 2,376,359 + qseF MCAODC_12025 0.42 +0.5 2,376,360 - qseF MCAODC_12025 0.42 +0.4 2,376,360 - qseF MCAODC_12025 0.42 +0.5 2,376,360 - qseF MCAODC_12025 0.42 +1.5 2,376,365 + qseF MCAODC_12025 0.43 +1.6 2,376,368 + qseF MCAODC_12025 0.43 +1.7 2,376,368 + qseF MCAODC_12025 0.43 -0.3 2,376,368 + qseF MCAODC_12025 0.43 -0.4 2,376,368 + qseF MCAODC_12025 0.43 +0.8 2,376,368 + qseF MCAODC_12025 0.43 +0.6 2,376,369 - qseF MCAODC_12025 0.43 -0.5 2,376,464 - qseF MCAODC_12025 0.50 +0.4 2,376,490 + qseF MCAODC_12025 0.52 -1.5 2,376,490 + qseF MCAODC_12025 0.52 -1.6 2,376,513 - qseF MCAODC_12025 0.54 +3.2 2,376,561 - qseF MCAODC_12025 0.57 +0.6 2,376,596 + qseF MCAODC_12025 0.60 -0.7 2,376,597 - qseF MCAODC_12025 0.60 +0.9 2,376,611 + qseF MCAODC_12025 0.61 -0.5 2,376,675 + qseF MCAODC_12025 0.66 -0.3 2,376,675 + qseF MCAODC_12025 0.66 +0.8 2,376,675 + qseF MCAODC_12025 0.66 +0.2 2,376,675 + qseF MCAODC_12025 0.66 +0.2 2,376,782 + qseF MCAODC_12025 0.74 +0.2 2,376,782 + qseF MCAODC_12025 0.74 +2.3 2,376,911 + qseF MCAODC_12025 0.84 +0.4 2,376,922 + qseF MCAODC_12025 0.84 +0.3 2,376,922 + qseF MCAODC_12025 0.84 -0.4 2,376,922 + qseF MCAODC_12025 0.84 +0.4 2,376,922 + qseF MCAODC_12025 0.84 +1.0 2,376,923 - qseF MCAODC_12025 0.84 +0.6 2,376,923 - qseF MCAODC_12025 0.84 +1.0 2,376,923 - qseF MCAODC_12025 0.84 -0.1 2,376,925 + qseF MCAODC_12025 0.85 -0.1 2,376,925 + qseF MCAODC_12025 0.85 -0.5 2,376,925 + qseF MCAODC_12025 0.85 -0.1 2,376,926 - qseF MCAODC_12025 0.85 -0.2 2,376,980 + qseF MCAODC_12025 0.89 -0.1 2,376,981 - qseF MCAODC_12025 0.89 +1.5 2,377,007 + +0.5 2,377,075 - +0.0 2,377,080 + -1.5 2,377,080 + +0.4 2,377,139 + -0.6 2,377,139 + +1.3 2,377,140 - -0.6 2,377,146 + -1.2 2,377,153 - +2.5 2,377,187 + -1.0 2,377,187 + +0.2 2,377,187 + +0.4 2,377,188 - +0.5 2,377,214 + -0.2 2,377,341 + glnB MCAODC_12030 0.44 -0.6 2,377,341 + glnB MCAODC_12030 0.44 +1.1 2,377,341 + glnB MCAODC_12030 0.44 -1.3 2,377,341 + glnB MCAODC_12030 0.44 -3.0 2,377,341 + glnB MCAODC_12030 0.44 -0.7 2,377,342 - glnB MCAODC_12030 0.45 +1.0 2,377,342 - glnB MCAODC_12030 0.45 -0.0 2,377,343 + glnB MCAODC_12030 0.45 -0.4 2,377,343 + glnB MCAODC_12030 0.45 -1.5 2,377,343 + glnB MCAODC_12030 0.45 -0.1 2,377,344 - glnB MCAODC_12030 0.45 -0.3 2,377,403 + glnB MCAODC_12030 0.63 -0.5 2,377,415 + glnB MCAODC_12030 0.66 -0.2 2,377,585 + +0.7 2,377,605 + +0.0 2,377,640 + +0.4 2,377,641 - +1.0 2,377,686 + -0.3 2,377,765 + hmpA MCAODC_12035 0.16 +0.4 2,377,841 - hmpA MCAODC_12035 0.22 -0.7 2,378,010 - hmpA MCAODC_12035 0.37 -0.4 2,378,078 + hmpA MCAODC_12035 0.42 -1.3 2,378,110 + hmpA MCAODC_12035 0.45 +0.3 2,378,149 - hmpA MCAODC_12035 0.48 +0.6 2,378,312 - hmpA MCAODC_12035 0.62 -0.3 2,378,349 + hmpA MCAODC_12035 0.65 +0.1 2,378,371 + hmpA MCAODC_12035 0.67 +0.6 2,378,372 - hmpA MCAODC_12035 0.67 -0.4 2,378,375 + hmpA MCAODC_12035 0.67 -0.9 2,378,375 + hmpA MCAODC_12035 0.67 -0.3 2,378,375 + hmpA MCAODC_12035 0.67 +0.5 2,378,375 + hmpA MCAODC_12035 0.67 +0.1 2,378,376 - hmpA MCAODC_12035 0.67 +0.6 2,378,376 - hmpA MCAODC_12035 0.67 -0.3 2,378,376 - hmpA MCAODC_12035 0.67 -0.8 2,378,380 + hmpA MCAODC_12035 0.68 +1.1 2,378,387 + hmpA MCAODC_12035 0.68 +0.1 2,378,388 - hmpA MCAODC_12035 0.68 -1.2 2,378,394 + hmpA MCAODC_12035 0.69 -2.0 2,378,394 + hmpA MCAODC_12035 0.69 -1.5 2,378,395 - hmpA MCAODC_12035 0.69 -0.3 2,378,481 + hmpA MCAODC_12035 0.76 -2.2
Or see this region's nucleotide sequence