Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucK and fucI are separated by 108 nucleotides fucI and fucP are separated by 32 nucleotides
MCAODC_10670: fucK - L-fuculokinase, at 2,123,511 to 2,124,929
fucK
MCAODC_10675: fucI - L-fucose isomerase, at 2,125,038 to 2,126,813
fucI
MCAODC_10680: fucP - L-fucose:H+ symporter permease, at 2,126,846 to 2,128,162
fucP
Position (kb)
2125
2126
2127 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2124.043 kb on + strand, within fucK at 2124.043 kb on + strand, within fucK at 2124.043 kb on + strand, within fucK at 2124.043 kb on + strand, within fucK at 2124.043 kb on + strand, within fucK at 2124.043 kb on + strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.044 kb on - strand, within fucK at 2124.093 kb on + strand, within fucK at 2124.094 kb on - strand, within fucK at 2124.104 kb on + strand, within fucK at 2124.105 kb on - strand, within fucK at 2124.105 kb on - strand, within fucK at 2124.129 kb on + strand, within fucK at 2124.143 kb on + strand, within fucK at 2124.143 kb on + strand, within fucK at 2124.271 kb on - strand, within fucK at 2124.327 kb on - strand, within fucK at 2124.427 kb on - strand, within fucK at 2124.452 kb on + strand, within fucK at 2124.515 kb on + strand, within fucK at 2124.525 kb on - strand, within fucK at 2124.659 kb on + strand, within fucK at 2124.659 kb on + strand, within fucK at 2124.660 kb on - strand, within fucK at 2124.660 kb on - strand, within fucK at 2124.660 kb on - strand, within fucK at 2124.663 kb on + strand, within fucK at 2124.732 kb on - strand, within fucK at 2124.777 kb on + strand, within fucK at 2124.778 kb on - strand, within fucK at 2124.828 kb on - strand at 2124.828 kb on - strand at 2124.945 kb on - strand at 2124.945 kb on - strand at 2124.946 kb on + strand at 2124.947 kb on - strand at 2124.947 kb on - strand at 2124.947 kb on - strand at 2125.031 kb on + strand at 2125.031 kb on + strand at 2125.031 kb on + strand at 2125.031 kb on + strand at 2125.031 kb on + strand at 2125.032 kb on - strand at 2125.032 kb on - strand at 2125.032 kb on - strand at 2125.036 kb on + strand at 2125.036 kb on + strand at 2125.036 kb on + strand at 2125.036 kb on + strand at 2125.036 kb on + strand at 2125.036 kb on + strand at 2125.037 kb on - strand at 2125.037 kb on - strand at 2125.037 kb on - strand at 2125.037 kb on - strand at 2125.037 kb on - strand at 2125.048 kb on + strand at 2125.049 kb on - strand at 2125.049 kb on - strand at 2125.049 kb on - strand at 2125.060 kb on + strand at 2125.060 kb on + strand at 2125.061 kb on - strand at 2125.097 kb on - strand at 2125.130 kb on - strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.157 kb on + strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.158 kb on - strand at 2125.161 kb on + strand at 2125.162 kb on - strand at 2125.261 kb on + strand, within fucI at 2125.495 kb on + strand, within fucI at 2125.496 kb on - strand, within fucI at 2125.586 kb on + strand, within fucI at 2125.682 kb on + strand, within fucI at 2125.682 kb on + strand, within fucI at 2125.683 kb on - strand, within fucI at 2125.692 kb on + strand, within fucI at 2125.693 kb on - strand, within fucI at 2125.721 kb on - strand, within fucI at 2125.741 kb on - strand, within fucI at 2125.773 kb on + strand, within fucI at 2126.007 kb on - strand, within fucI at 2126.068 kb on + strand, within fucI at 2126.079 kb on - strand, within fucI at 2126.108 kb on + strand, within fucI at 2126.243 kb on + strand, within fucI at 2126.244 kb on - strand, within fucI at 2126.244 kb on - strand, within fucI at 2126.244 kb on - strand, within fucI at 2126.244 kb on - strand, within fucI at 2126.244 kb on - strand, within fucI at 2126.244 kb on - strand, within fucI at 2126.284 kb on + strand, within fucI at 2126.284 kb on + strand, within fucI at 2126.284 kb on + strand, within fucI at 2126.284 kb on + strand, within fucI at 2126.284 kb on + strand, within fucI at 2126.285 kb on - strand, within fucI at 2126.285 kb on - strand, within fucI at 2126.285 kb on - strand, within fucI at 2126.285 kb on - strand, within fucI at 2126.292 kb on - strand, within fucI at 2126.292 kb on - strand, within fucI at 2126.398 kb on + strand, within fucI at 2126.399 kb on - strand, within fucI at 2126.539 kb on + strand, within fucI at 2126.539 kb on + strand, within fucI at 2126.540 kb on - strand, within fucI at 2126.574 kb on + strand, within fucI at 2126.574 kb on + strand, within fucI at 2126.575 kb on - strand, within fucI at 2126.706 kb on - strand at 2126.772 kb on - strand at 2126.841 kb on + strand at 2126.841 kb on + strand at 2126.851 kb on + strand at 2126.852 kb on - strand at 2126.852 kb on - strand at 2126.884 kb on + strand at 2126.884 kb on + strand at 2126.998 kb on + strand, within fucP at 2126.999 kb on - strand, within fucP at 2126.999 kb on - strand, within fucP at 2126.999 kb on - strand, within fucP at 2127.018 kb on + strand, within fucP at 2127.043 kb on + strand, within fucP at 2127.083 kb on - strand, within fucP at 2127.083 kb on - strand, within fucP at 2127.108 kb on - strand, within fucP at 2127.110 kb on + strand, within fucP at 2127.111 kb on - strand, within fucP at 2127.264 kb on + strand, within fucP at 2127.265 kb on - strand, within fucP at 2127.265 kb on - strand, within fucP at 2127.268 kb on + strand, within fucP at 2127.305 kb on + strand, within fucP at 2127.305 kb on + strand, within fucP at 2127.324 kb on + strand, within fucP at 2127.324 kb on + strand, within fucP at 2127.325 kb on - strand, within fucP at 2127.325 kb on - strand, within fucP at 2127.325 kb on - strand, within fucP at 2127.369 kb on - strand, within fucP at 2127.371 kb on + strand, within fucP at 2127.372 kb on - strand, within fucP at 2127.372 kb on - strand, within fucP at 2127.372 kb on - strand, within fucP at 2127.526 kb on + strand, within fucP at 2127.526 kb on + strand, within fucP at 2127.526 kb on + strand, within fucP at 2127.526 kb on + strand, within fucP at 2127.526 kb on + strand, within fucP at 2127.527 kb on - strand, within fucP at 2127.527 kb on - strand, within fucP at 2127.527 kb on - strand, within fucP at 2127.527 kb on - strand, within fucP at 2127.528 kb on + strand, within fucP at 2127.528 kb on + strand, within fucP at 2127.528 kb on + strand, within fucP at 2127.528 kb on + strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.529 kb on - strand, within fucP at 2127.565 kb on - strand, within fucP at 2127.728 kb on + strand, within fucP
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,124,043 + fucK MCAODC_10670 0.37 -3.1 2,124,043 + fucK MCAODC_10670 0.37 +1.2 2,124,043 + fucK MCAODC_10670 0.37 -1.1 2,124,043 + fucK MCAODC_10670 0.37 +1.8 2,124,043 + fucK MCAODC_10670 0.37 -1.2 2,124,043 + fucK MCAODC_10670 0.37 -0.6 2,124,044 - fucK MCAODC_10670 0.38 -0.6 2,124,044 - fucK MCAODC_10670 0.38 +0.3 2,124,044 - fucK MCAODC_10670 0.38 -0.4 2,124,044 - fucK MCAODC_10670 0.38 -0.5 2,124,044 - fucK MCAODC_10670 0.38 +0.6 2,124,044 - fucK MCAODC_10670 0.38 +0.4 2,124,044 - fucK MCAODC_10670 0.38 -0.9 2,124,044 - fucK MCAODC_10670 0.38 -0.0 2,124,093 + fucK MCAODC_10670 0.41 +0.3 2,124,094 - fucK MCAODC_10670 0.41 -0.9 2,124,104 + fucK MCAODC_10670 0.42 +1.0 2,124,105 - fucK MCAODC_10670 0.42 +0.6 2,124,105 - fucK MCAODC_10670 0.42 +1.1 2,124,129 + fucK MCAODC_10670 0.44 -3.2 2,124,143 + fucK MCAODC_10670 0.45 +0.4 2,124,143 + fucK MCAODC_10670 0.45 -0.7 2,124,271 - fucK MCAODC_10670 0.54 +0.7 2,124,327 - fucK MCAODC_10670 0.58 +0.4 2,124,427 - fucK MCAODC_10670 0.65 +0.5 2,124,452 + fucK MCAODC_10670 0.66 -0.6 2,124,515 + fucK MCAODC_10670 0.71 +1.2 2,124,525 - fucK MCAODC_10670 0.71 +1.2 2,124,659 + fucK MCAODC_10670 0.81 -0.4 2,124,659 + fucK MCAODC_10670 0.81 -0.8 2,124,660 - fucK MCAODC_10670 0.81 +0.9 2,124,660 - fucK MCAODC_10670 0.81 +1.5 2,124,660 - fucK MCAODC_10670 0.81 +0.1 2,124,663 + fucK MCAODC_10670 0.81 +1.1 2,124,732 - fucK MCAODC_10670 0.86 -0.7 2,124,777 + fucK MCAODC_10670 0.89 -1.0 2,124,778 - fucK MCAODC_10670 0.89 +0.2 2,124,828 - -0.3 2,124,828 - +0.8 2,124,945 - -2.6 2,124,945 - +1.1 2,124,946 + +0.1 2,124,947 - +0.7 2,124,947 - -0.1 2,124,947 - +0.7 2,125,031 + +2.1 2,125,031 + -2.4 2,125,031 + -0.7 2,125,031 + +0.3 2,125,031 + +1.5 2,125,032 - -0.5 2,125,032 - +0.1 2,125,032 - +0.3 2,125,036 + +1.4 2,125,036 + -0.9 2,125,036 + -0.4 2,125,036 + +2.1 2,125,036 + +0.3 2,125,036 + +0.7 2,125,037 - -2.0 2,125,037 - -1.2 2,125,037 - -1.7 2,125,037 - +0.3 2,125,037 - -1.1 2,125,048 + +3.3 2,125,049 - -0.1 2,125,049 - -1.9 2,125,049 - +0.4 2,125,060 + +1.0 2,125,060 + -0.2 2,125,061 - +1.1 2,125,097 - -0.1 2,125,130 - +1.1 2,125,157 + -0.2 2,125,157 + -0.4 2,125,157 + +0.0 2,125,157 + -0.2 2,125,157 + -1.7 2,125,157 + -0.8 2,125,157 + -0.5 2,125,157 + +0.8 2,125,158 - -0.1 2,125,158 - -1.2 2,125,158 - -1.8 2,125,158 - +1.3 2,125,158 - -1.0 2,125,158 - -1.2 2,125,158 - -0.4 2,125,158 - +0.3 2,125,158 - -2.7 2,125,158 - +0.5 2,125,158 - -0.9 2,125,158 - +0.2 2,125,158 - +0.6 2,125,158 - -0.7 2,125,158 - -2.1 2,125,158 - -1.3 2,125,161 + +0.4 2,125,162 - -0.6 2,125,261 + fucI MCAODC_10675 0.13 -0.6 2,125,495 + fucI MCAODC_10675 0.26 +1.6 2,125,496 - fucI MCAODC_10675 0.26 +0.3 2,125,586 + fucI MCAODC_10675 0.31 +1.2 2,125,682 + fucI MCAODC_10675 0.36 +0.1 2,125,682 + fucI MCAODC_10675 0.36 +0.7 2,125,683 - fucI MCAODC_10675 0.36 +2.0 2,125,692 + fucI MCAODC_10675 0.37 +0.7 2,125,693 - fucI MCAODC_10675 0.37 +1.7 2,125,721 - fucI MCAODC_10675 0.38 -2.4 2,125,741 - fucI MCAODC_10675 0.40 -0.4 2,125,773 + fucI MCAODC_10675 0.41 -0.2 2,126,007 - fucI MCAODC_10675 0.55 +0.7 2,126,068 + fucI MCAODC_10675 0.58 +0.6 2,126,079 - fucI MCAODC_10675 0.59 +1.0 2,126,108 + fucI MCAODC_10675 0.60 -2.0 2,126,243 + fucI MCAODC_10675 0.68 +0.0 2,126,244 - fucI MCAODC_10675 0.68 +0.1 2,126,244 - fucI MCAODC_10675 0.68 -0.0 2,126,244 - fucI MCAODC_10675 0.68 -0.6 2,126,244 - fucI MCAODC_10675 0.68 +0.2 2,126,244 - fucI MCAODC_10675 0.68 -0.2 2,126,244 - fucI MCAODC_10675 0.68 -0.4 2,126,284 + fucI MCAODC_10675 0.70 -3.4 2,126,284 + fucI MCAODC_10675 0.70 +0.0 2,126,284 + fucI MCAODC_10675 0.70 +0.1 2,126,284 + fucI MCAODC_10675 0.70 -0.3 2,126,284 + fucI MCAODC_10675 0.70 -4.1 2,126,285 - fucI MCAODC_10675 0.70 +0.5 2,126,285 - fucI MCAODC_10675 0.70 -0.5 2,126,285 - fucI MCAODC_10675 0.70 -1.4 2,126,285 - fucI MCAODC_10675 0.70 +0.6 2,126,292 - fucI MCAODC_10675 0.71 +0.7 2,126,292 - fucI MCAODC_10675 0.71 +0.4 2,126,398 + fucI MCAODC_10675 0.77 +1.6 2,126,399 - fucI MCAODC_10675 0.77 +1.3 2,126,539 + fucI MCAODC_10675 0.85 +0.9 2,126,539 + fucI MCAODC_10675 0.85 -1.5 2,126,540 - fucI MCAODC_10675 0.85 +1.6 2,126,574 + fucI MCAODC_10675 0.86 +0.6 2,126,574 + fucI MCAODC_10675 0.86 +0.4 2,126,575 - fucI MCAODC_10675 0.87 -1.4 2,126,706 - +0.3 2,126,772 - +0.6 2,126,841 + +1.0 2,126,841 + -0.3 2,126,851 + -0.8 2,126,852 - -0.1 2,126,852 - +0.6 2,126,884 + -0.8 2,126,884 + -0.6 2,126,998 + fucP MCAODC_10680 0.12 +0.6 2,126,999 - fucP MCAODC_10680 0.12 -0.3 2,126,999 - fucP MCAODC_10680 0.12 +0.1 2,126,999 - fucP MCAODC_10680 0.12 +0.2 2,127,018 + fucP MCAODC_10680 0.13 +1.0 2,127,043 + fucP MCAODC_10680 0.15 -0.8 2,127,083 - fucP MCAODC_10680 0.18 -0.8 2,127,083 - fucP MCAODC_10680 0.18 -0.8 2,127,108 - fucP MCAODC_10680 0.20 -2.2 2,127,110 + fucP MCAODC_10680 0.20 -0.7 2,127,111 - fucP MCAODC_10680 0.20 +0.7 2,127,264 + fucP MCAODC_10680 0.32 -0.4 2,127,265 - fucP MCAODC_10680 0.32 -0.3 2,127,265 - fucP MCAODC_10680 0.32 +0.8 2,127,268 + fucP MCAODC_10680 0.32 +0.2 2,127,305 + fucP MCAODC_10680 0.35 -0.6 2,127,305 + fucP MCAODC_10680 0.35 -0.3 2,127,324 + fucP MCAODC_10680 0.36 -0.6 2,127,324 + fucP MCAODC_10680 0.36 +1.4 2,127,325 - fucP MCAODC_10680 0.36 +0.3 2,127,325 - fucP MCAODC_10680 0.36 -0.8 2,127,325 - fucP MCAODC_10680 0.36 +0.9 2,127,369 - fucP MCAODC_10680 0.40 +1.2 2,127,371 + fucP MCAODC_10680 0.40 +0.6 2,127,372 - fucP MCAODC_10680 0.40 +1.7 2,127,372 - fucP MCAODC_10680 0.40 +1.7 2,127,372 - fucP MCAODC_10680 0.40 -0.7 2,127,526 + fucP MCAODC_10680 0.52 -0.5 2,127,526 + fucP MCAODC_10680 0.52 -1.3 2,127,526 + fucP MCAODC_10680 0.52 -1.6 2,127,526 + fucP MCAODC_10680 0.52 +1.0 2,127,526 + fucP MCAODC_10680 0.52 -1.6 2,127,527 - fucP MCAODC_10680 0.52 -0.3 2,127,527 - fucP MCAODC_10680 0.52 +1.5 2,127,527 - fucP MCAODC_10680 0.52 -0.4 2,127,527 - fucP MCAODC_10680 0.52 +0.8 2,127,528 + fucP MCAODC_10680 0.52 -0.5 2,127,528 + fucP MCAODC_10680 0.52 +1.3 2,127,528 + fucP MCAODC_10680 0.52 +0.5 2,127,528 + fucP MCAODC_10680 0.52 +0.7 2,127,529 - fucP MCAODC_10680 0.52 -0.2 2,127,529 - fucP MCAODC_10680 0.52 +0.4 2,127,529 - fucP MCAODC_10680 0.52 +1.1 2,127,529 - fucP MCAODC_10680 0.52 +0.6 2,127,529 - fucP MCAODC_10680 0.52 -0.5 2,127,529 - fucP MCAODC_10680 0.52 +0.4 2,127,529 - fucP MCAODC_10680 0.52 -1.7 2,127,529 - fucP MCAODC_10680 0.52 +0.8 2,127,529 - fucP MCAODC_10680 0.52 +0.2 2,127,529 - fucP MCAODC_10680 0.52 +0.9 2,127,529 - fucP MCAODC_10680 0.52 +0.4 2,127,565 - fucP MCAODC_10680 0.55 -3.3 2,127,728 + fucP MCAODC_10680 0.67 +0.7
Or see this region's nucleotide sequence