Strain Fitness in Escherichia coli ECRC101 around MCAODC_10275

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsctC and MCAODC_10275 are separated by 4 nucleotidesMCAODC_10275 and escV overlap by 8 nucleotides MCAODC_10270: sctC - type III secretion system outer membrane ring subunit SctC, at 2,050,660 to 2,052,363 sctC MCAODC_10275: MCAODC_10275 - YopN/LcrE/InvE/MxiC type III secretion system gatekeeper, at 2,052,368 to 2,053,513 _10275 MCAODC_10280: escV - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 2,053,506 to 2,055,566 escV Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -3 -2 -1 0 1at 2051.373 kb on - strand, within sctCat 2051.631 kb on - strand, within sctCat 2051.883 kb on - strand, within sctCat 2051.887 kb on + strand, within sctCat 2051.888 kb on - strand, within sctCat 2052.027 kb on - strand, within sctCat 2052.027 kb on - strand, within sctCat 2052.027 kb on - strand, within sctCat 2052.031 kb on - strand, within sctCat 2052.078 kb on + strand, within sctCat 2052.078 kb on + strand, within sctCat 2052.079 kb on - strand, within sctCat 2052.436 kb on + strandat 2052.436 kb on + strandat 2052.499 kb on + strand, within MCAODC_10275at 2052.523 kb on + strand, within MCAODC_10275at 2052.524 kb on - strand, within MCAODC_10275at 2052.524 kb on - strand, within MCAODC_10275at 2052.677 kb on - strand, within MCAODC_10275at 2052.808 kb on - strand, within MCAODC_10275at 2053.892 kb on + strand, within escVat 2054.030 kb on - strand, within escVat 2054.097 kb on - strand, within escVat 2054.141 kb on - strand, within escVat 2054.375 kb on + strand, within escV

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,051,373 - sctC MCAODC_10270 0.42 -0.9
2,051,631 - sctC MCAODC_10270 0.57 +0.2
2,051,883 - sctC MCAODC_10270 0.72 -0.2
2,051,887 + sctC MCAODC_10270 0.72 -0.5
2,051,888 - sctC MCAODC_10270 0.72 -1.2
2,052,027 - sctC MCAODC_10270 0.80 +0.8
2,052,027 - sctC MCAODC_10270 0.80 -2.4
2,052,027 - sctC MCAODC_10270 0.80 +0.5
2,052,031 - sctC MCAODC_10270 0.80 -0.5
2,052,078 + sctC MCAODC_10270 0.83 -3.0
2,052,078 + sctC MCAODC_10270 0.83 -0.1
2,052,079 - sctC MCAODC_10270 0.83 -2.9
2,052,436 + -1.7
2,052,436 + +0.0
2,052,499 + MCAODC_10275 0.11 +1.1
2,052,523 + MCAODC_10275 0.14 +0.4
2,052,524 - MCAODC_10275 0.14 +0.9
2,052,524 - MCAODC_10275 0.14 +1.7
2,052,677 - MCAODC_10275 0.27 -2.5
2,052,808 - MCAODC_10275 0.38 -2.6
2,053,892 + escV MCAODC_10280 0.19 -0.5
2,054,030 - escV MCAODC_10280 0.25 -0.5
2,054,097 - escV MCAODC_10280 0.29 +0.3
2,054,141 - escV MCAODC_10280 0.31 +0.8
2,054,375 + escV MCAODC_10280 0.42 +0.6

Or see this region's nucleotide sequence