Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_09660 and tnp-IS66 are separated by 46 nucleotides tnp-IS66 and tnpB are separated by 19 nucleotides tnpB and tnpA overlap by 4 nucleotides
MCAODC_09660: MCAODC_09660 - helicase, at 1,927,146 to 1,928,021
_09660
MCAODC_09665: tnp-IS66 - IS66 family transposase, at 1,928,068 to 1,929,270
tnp-IS66
MCAODC_09670: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,929,290 to 1,929,637
tnpB
MCAODC_09675: tnpA - IS66-like element accessory protein TnpA, at 1,929,634 to 1,930,308
tnpA
Position (kb) 1928
1929
1930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1927.098 kb on + strand at 1927.098 kb on + strand at 1927.122 kb on - strand at 1927.123 kb on + strand at 1927.263 kb on - strand, within MCAODC_09660 at 1927.286 kb on - strand, within MCAODC_09660 at 1927.312 kb on + strand, within MCAODC_09660 at 1927.312 kb on + strand, within MCAODC_09660 at 1927.321 kb on + strand, within MCAODC_09660 at 1927.321 kb on + strand, within MCAODC_09660 at 1927.321 kb on + strand, within MCAODC_09660 at 1927.322 kb on - strand, within MCAODC_09660 at 1927.322 kb on - strand, within MCAODC_09660 at 1927.325 kb on + strand, within MCAODC_09660 at 1927.325 kb on + strand, within MCAODC_09660 at 1927.347 kb on - strand, within MCAODC_09660 at 1927.347 kb on - strand, within MCAODC_09660 at 1927.381 kb on + strand, within MCAODC_09660 at 1927.382 kb on - strand, within MCAODC_09660 at 1927.470 kb on + strand, within MCAODC_09660 at 1927.470 kb on + strand, within MCAODC_09660 at 1927.470 kb on + strand, within MCAODC_09660 at 1927.470 kb on + strand, within MCAODC_09660 at 1927.471 kb on - strand, within MCAODC_09660 at 1927.473 kb on - strand, within MCAODC_09660 at 1927.473 kb on - strand, within MCAODC_09660 at 1927.501 kb on - strand, within MCAODC_09660 at 1927.501 kb on - strand, within MCAODC_09660 at 1927.556 kb on + strand, within MCAODC_09660 at 1927.630 kb on + strand, within MCAODC_09660 at 1927.667 kb on + strand, within MCAODC_09660 at 1927.667 kb on + strand, within MCAODC_09660 at 1927.667 kb on + strand, within MCAODC_09660 at 1927.775 kb on + strand, within MCAODC_09660 at 1927.803 kb on - strand, within MCAODC_09660 at 1927.803 kb on - strand, within MCAODC_09660 at 1927.878 kb on + strand, within MCAODC_09660 at 1927.879 kb on - strand, within MCAODC_09660 at 1927.906 kb on - strand, within MCAODC_09660 at 1927.906 kb on - strand, within MCAODC_09660 at 1927.950 kb on + strand at 1927.950 kb on + strand at 1927.983 kb on - strand at 1928.015 kb on + strand at 1928.015 kb on + strand at 1928.016 kb on - strand at 1928.016 kb on - strand at 1928.016 kb on - strand at 1928.081 kb on + strand at 1928.081 kb on + strand at 1928.081 kb on + strand at 1928.081 kb on + strand at 1928.081 kb on + strand at 1928.082 kb on - strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.171 kb on + strand at 1928.172 kb on - strand at 1928.172 kb on - strand at 1928.172 kb on - strand at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.230 kb on + strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.231 kb on - strand, within tnp-IS66 at 1928.262 kb on + strand, within tnp-IS66 at 1928.262 kb on + strand, within tnp-IS66 at 1928.263 kb on - strand, within tnp-IS66 at 1928.263 kb on - strand, within tnp-IS66 at 1928.294 kb on + strand, within tnp-IS66 at 1928.306 kb on + strand, within tnp-IS66 at 1928.306 kb on + strand, within tnp-IS66 at 1928.306 kb on + strand, within tnp-IS66 at 1928.315 kb on + strand, within tnp-IS66 at 1928.316 kb on - strand, within tnp-IS66 at 1928.335 kb on - strand, within tnp-IS66 at 1928.343 kb on - strand, within tnp-IS66 at 1928.343 kb on - strand, within tnp-IS66 at 1928.390 kb on + strand, within tnp-IS66 at 1928.390 kb on + strand, within tnp-IS66 at 1928.391 kb on - strand, within tnp-IS66 at 1928.494 kb on + strand, within tnp-IS66 at 1928.494 kb on + strand, within tnp-IS66 at 1928.494 kb on + strand, within tnp-IS66 at 1928.501 kb on - strand, within tnp-IS66 at 1928.543 kb on + strand, within tnp-IS66 at 1928.543 kb on + strand, within tnp-IS66 at 1928.543 kb on + strand, within tnp-IS66 at 1928.543 kb on + strand, within tnp-IS66 at 1928.544 kb on - strand, within tnp-IS66 at 1928.544 kb on - strand, within tnp-IS66 at 1928.562 kb on - strand, within tnp-IS66 at 1928.562 kb on - strand, within tnp-IS66 at 1928.610 kb on + strand, within tnp-IS66 at 1928.642 kb on + strand, within tnp-IS66 at 1928.643 kb on - strand, within tnp-IS66 at 1928.660 kb on + strand, within tnp-IS66 at 1928.685 kb on + strand, within tnp-IS66 at 1928.685 kb on + strand, within tnp-IS66 at 1928.696 kb on - strand, within tnp-IS66 at 1928.724 kb on - strand, within tnp-IS66 at 1928.764 kb on + strand, within tnp-IS66 at 1928.765 kb on - strand, within tnp-IS66 at 1929.050 kb on - strand, within tnp-IS66 at 1929.050 kb on - strand, within tnp-IS66 at 1929.051 kb on + strand, within tnp-IS66 at 1929.174 kb on - strand at 1929.182 kb on - strand at 1929.282 kb on - strand at 1929.292 kb on - strand at 1929.350 kb on + strand, within tnpB at 1929.351 kb on - strand, within tnpB at 1929.359 kb on + strand, within tnpB at 1929.447 kb on - strand, within tnpB at 1929.470 kb on + strand, within tnpB at 1929.512 kb on - strand, within tnpB at 1929.512 kb on - strand, within tnpB at 1929.512 kb on - strand, within tnpB at 1929.512 kb on - strand, within tnpB at 1929.584 kb on - strand, within tnpB at 1929.633 kb on - strand at 1929.633 kb on - strand at 1929.664 kb on + strand at 1929.674 kb on - strand at 1929.707 kb on - strand, within tnpA at 1929.720 kb on + strand, within tnpA at 1929.720 kb on + strand, within tnpA at 1929.721 kb on - strand, within tnpA at 1929.783 kb on + strand, within tnpA at 1929.801 kb on + strand, within tnpA at 1929.801 kb on + strand, within tnpA at 1929.801 kb on + strand, within tnpA at 1929.862 kb on + strand, within tnpA at 1929.863 kb on - strand, within tnpA at 1929.863 kb on - strand, within tnpA at 1929.880 kb on + strand, within tnpA at 1929.880 kb on + strand, within tnpA at 1929.881 kb on - strand, within tnpA at 1929.931 kb on - strand, within tnpA at 1929.986 kb on - strand, within tnpA at 1930.014 kb on - strand, within tnpA at 1930.066 kb on + strand, within tnpA at 1930.111 kb on + strand, within tnpA at 1930.112 kb on - strand, within tnpA at 1930.112 kb on - strand, within tnpA at 1930.155 kb on + strand, within tnpA at 1930.156 kb on - strand, within tnpA at 1930.173 kb on + strand, within tnpA at 1930.174 kb on - strand, within tnpA at 1930.174 kb on - strand, within tnpA at 1930.174 kb on - strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.177 kb on + strand, within tnpA at 1930.178 kb on - strand, within tnpA at 1930.198 kb on + strand, within tnpA at 1930.198 kb on + strand, within tnpA at 1930.198 kb on + strand, within tnpA at 1930.198 kb on + strand, within tnpA at 1930.199 kb on - strand, within tnpA at 1930.266 kb on - strand at 1930.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,927,098 + +0.0 1,927,098 + -1.0 1,927,122 - -1.6 1,927,123 + +0.2 1,927,263 - MCAODC_09660 0.13 -1.3 1,927,286 - MCAODC_09660 0.16 +1.1 1,927,312 + MCAODC_09660 0.19 -0.6 1,927,312 + MCAODC_09660 0.19 +0.7 1,927,321 + MCAODC_09660 0.20 -0.6 1,927,321 + MCAODC_09660 0.20 +1.8 1,927,321 + MCAODC_09660 0.20 -0.4 1,927,322 - MCAODC_09660 0.20 +0.9 1,927,322 - MCAODC_09660 0.20 -1.4 1,927,325 + MCAODC_09660 0.20 -2.9 1,927,325 + MCAODC_09660 0.20 -0.2 1,927,347 - MCAODC_09660 0.23 -0.0 1,927,347 - MCAODC_09660 0.23 -0.8 1,927,381 + MCAODC_09660 0.27 +0.5 1,927,382 - MCAODC_09660 0.27 -2.7 1,927,470 + MCAODC_09660 0.37 +0.2 1,927,470 + MCAODC_09660 0.37 +0.6 1,927,470 + MCAODC_09660 0.37 -3.3 1,927,470 + MCAODC_09660 0.37 +0.4 1,927,471 - MCAODC_09660 0.37 -0.4 1,927,473 - MCAODC_09660 0.37 -1.1 1,927,473 - MCAODC_09660 0.37 +0.8 1,927,501 - MCAODC_09660 0.41 +1.0 1,927,501 - MCAODC_09660 0.41 +0.7 1,927,556 + MCAODC_09660 0.47 -1.4 1,927,630 + MCAODC_09660 0.55 -0.6 1,927,667 + MCAODC_09660 0.59 -0.9 1,927,667 + MCAODC_09660 0.59 +0.3 1,927,667 + MCAODC_09660 0.59 -2.0 1,927,775 + MCAODC_09660 0.72 +0.7 1,927,803 - MCAODC_09660 0.75 +0.4 1,927,803 - MCAODC_09660 0.75 -0.2 1,927,878 + MCAODC_09660 0.84 -3.4 1,927,879 - MCAODC_09660 0.84 -0.1 1,927,906 - MCAODC_09660 0.87 -0.1 1,927,906 - MCAODC_09660 0.87 -0.0 1,927,950 + +0.3 1,927,950 + -1.0 1,927,983 - +0.8 1,928,015 + +1.2 1,928,015 + -0.5 1,928,016 - -0.0 1,928,016 - -2.2 1,928,016 - +1.3 1,928,081 + -2.3 1,928,081 + +0.4 1,928,081 + -0.4 1,928,081 + -0.8 1,928,081 + +0.3 1,928,082 - -1.2 1,928,171 + -0.4 1,928,171 + +1.0 1,928,171 + +1.3 1,928,171 + +1.1 1,928,171 + +0.3 1,928,171 + +0.8 1,928,171 + +0.9 1,928,171 + -0.7 1,928,172 - +0.1 1,928,172 - +1.0 1,928,172 - -1.1 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -0.3 1,928,230 + tnp-IS66 MCAODC_09665 0.13 +0.4 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -0.3 1,928,230 + tnp-IS66 MCAODC_09665 0.13 +0.7 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -1.3 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -0.2 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -0.3 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -1.0 1,928,230 + tnp-IS66 MCAODC_09665 0.13 +1.3 1,928,230 + tnp-IS66 MCAODC_09665 0.13 -0.6 1,928,231 - tnp-IS66 MCAODC_09665 0.14 +0.1 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.3 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.2 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.1 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.2 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.3 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.2 1,928,231 - tnp-IS66 MCAODC_09665 0.14 -0.7 1,928,231 - tnp-IS66 MCAODC_09665 0.14 +0.3 1,928,231 - tnp-IS66 MCAODC_09665 0.14 +0.7 1,928,231 - tnp-IS66 MCAODC_09665 0.14 +0.7 1,928,262 + tnp-IS66 MCAODC_09665 0.16 +0.3 1,928,262 + tnp-IS66 MCAODC_09665 0.16 +0.1 1,928,263 - tnp-IS66 MCAODC_09665 0.16 +0.6 1,928,263 - tnp-IS66 MCAODC_09665 0.16 +0.1 1,928,294 + tnp-IS66 MCAODC_09665 0.19 +1.9 1,928,306 + tnp-IS66 MCAODC_09665 0.20 +1.1 1,928,306 + tnp-IS66 MCAODC_09665 0.20 -1.6 1,928,306 + tnp-IS66 MCAODC_09665 0.20 -0.3 1,928,315 + tnp-IS66 MCAODC_09665 0.21 -0.6 1,928,316 - tnp-IS66 MCAODC_09665 0.21 +0.1 1,928,335 - tnp-IS66 MCAODC_09665 0.22 -0.1 1,928,343 - tnp-IS66 MCAODC_09665 0.23 -3.4 1,928,343 - tnp-IS66 MCAODC_09665 0.23 -0.5 1,928,390 + tnp-IS66 MCAODC_09665 0.27 -0.4 1,928,390 + tnp-IS66 MCAODC_09665 0.27 -0.2 1,928,391 - tnp-IS66 MCAODC_09665 0.27 +0.2 1,928,494 + tnp-IS66 MCAODC_09665 0.35 -0.7 1,928,494 + tnp-IS66 MCAODC_09665 0.35 +0.6 1,928,494 + tnp-IS66 MCAODC_09665 0.35 -0.0 1,928,501 - tnp-IS66 MCAODC_09665 0.36 -0.5 1,928,543 + tnp-IS66 MCAODC_09665 0.39 -1.7 1,928,543 + tnp-IS66 MCAODC_09665 0.39 -2.0 1,928,543 + tnp-IS66 MCAODC_09665 0.39 +1.9 1,928,543 + tnp-IS66 MCAODC_09665 0.39 +0.7 1,928,544 - tnp-IS66 MCAODC_09665 0.40 -0.8 1,928,544 - tnp-IS66 MCAODC_09665 0.40 +1.1 1,928,562 - tnp-IS66 MCAODC_09665 0.41 -0.3 1,928,562 - tnp-IS66 MCAODC_09665 0.41 -1.1 1,928,610 + tnp-IS66 MCAODC_09665 0.45 +0.6 1,928,642 + tnp-IS66 MCAODC_09665 0.48 +1.6 1,928,643 - tnp-IS66 MCAODC_09665 0.48 -1.0 1,928,660 + tnp-IS66 MCAODC_09665 0.49 +0.2 1,928,685 + tnp-IS66 MCAODC_09665 0.51 +0.6 1,928,685 + tnp-IS66 MCAODC_09665 0.51 -0.0 1,928,696 - tnp-IS66 MCAODC_09665 0.52 -1.0 1,928,724 - tnp-IS66 MCAODC_09665 0.55 +0.9 1,928,764 + tnp-IS66 MCAODC_09665 0.58 +0.7 1,928,765 - tnp-IS66 MCAODC_09665 0.58 -0.5 1,929,050 - tnp-IS66 MCAODC_09665 0.82 -0.4 1,929,050 - tnp-IS66 MCAODC_09665 0.82 +0.6 1,929,051 + tnp-IS66 MCAODC_09665 0.82 -0.0 1,929,174 - +0.2 1,929,182 - +1.2 1,929,282 - -2.9 1,929,292 - -1.8 1,929,350 + tnpB MCAODC_09670 0.17 +0.4 1,929,351 - tnpB MCAODC_09670 0.18 +0.1 1,929,359 + tnpB MCAODC_09670 0.20 +0.5 1,929,447 - tnpB MCAODC_09670 0.45 -0.7 1,929,470 + tnpB MCAODC_09670 0.52 +0.2 1,929,512 - tnpB MCAODC_09670 0.64 +0.5 1,929,512 - tnpB MCAODC_09670 0.64 +0.6 1,929,512 - tnpB MCAODC_09670 0.64 -0.1 1,929,512 - tnpB MCAODC_09670 0.64 -0.2 1,929,584 - tnpB MCAODC_09670 0.84 +0.7 1,929,633 - +0.8 1,929,633 - +0.5 1,929,664 + -1.4 1,929,674 - -1.0 1,929,707 - tnpA MCAODC_09675 0.11 +0.5 1,929,720 + tnpA MCAODC_09675 0.13 +1.0 1,929,720 + tnpA MCAODC_09675 0.13 +0.3 1,929,721 - tnpA MCAODC_09675 0.13 -0.6 1,929,783 + tnpA MCAODC_09675 0.22 -3.4 1,929,801 + tnpA MCAODC_09675 0.25 -3.8 1,929,801 + tnpA MCAODC_09675 0.25 -0.9 1,929,801 + tnpA MCAODC_09675 0.25 -0.8 1,929,862 + tnpA MCAODC_09675 0.34 +0.1 1,929,863 - tnpA MCAODC_09675 0.34 +0.7 1,929,863 - tnpA MCAODC_09675 0.34 -0.4 1,929,880 + tnpA MCAODC_09675 0.36 +0.0 1,929,880 + tnpA MCAODC_09675 0.36 -0.6 1,929,881 - tnpA MCAODC_09675 0.37 +0.4 1,929,931 - tnpA MCAODC_09675 0.44 -1.1 1,929,986 - tnpA MCAODC_09675 0.52 -0.6 1,930,014 - tnpA MCAODC_09675 0.56 +0.3 1,930,066 + tnpA MCAODC_09675 0.64 +1.3 1,930,111 + tnpA MCAODC_09675 0.71 +0.8 1,930,112 - tnpA MCAODC_09675 0.71 +0.1 1,930,112 - tnpA MCAODC_09675 0.71 -0.6 1,930,155 + tnpA MCAODC_09675 0.77 -0.6 1,930,156 - tnpA MCAODC_09675 0.77 -0.2 1,930,173 + tnpA MCAODC_09675 0.80 +0.2 1,930,174 - tnpA MCAODC_09675 0.80 +0.5 1,930,174 - tnpA MCAODC_09675 0.80 +0.7 1,930,174 - tnpA MCAODC_09675 0.80 +0.0 1,930,177 + tnpA MCAODC_09675 0.80 +0.6 1,930,177 + tnpA MCAODC_09675 0.80 +0.6 1,930,177 + tnpA MCAODC_09675 0.80 +0.1 1,930,177 + tnpA MCAODC_09675 0.80 -0.2 1,930,177 + tnpA MCAODC_09675 0.80 +0.6 1,930,177 + tnpA MCAODC_09675 0.80 -0.4 1,930,177 + tnpA MCAODC_09675 0.80 -0.6 1,930,178 - tnpA MCAODC_09675 0.81 -0.2 1,930,198 + tnpA MCAODC_09675 0.84 +1.0 1,930,198 + tnpA MCAODC_09675 0.84 -0.7 1,930,198 + tnpA MCAODC_09675 0.84 -0.1 1,930,198 + tnpA MCAODC_09675 0.84 +3.7 1,930,199 - tnpA MCAODC_09675 0.84 +0.4 1,930,266 - +0.7 1,930,266 - -0.0
Or see this region's nucleotide sequence