Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt garK and MCAODC_08895 are separated by 515 nucleotides MCAODC_08895 and yhaB are separated by 21 nucleotides yhaB and tdcR are separated by 255 nucleotides
MCAODC_08885: garK - glycerate 2-kinase, at 1,773,874 to 1,775,019
garK
MCAODC_08895: MCAODC_08895 - YhaC family protein, at 1,775,535 to 1,776,722
_08895
MCAODC_08900: yhaB - Uncharacterized protein YhaB, at 1,776,744 to 1,777,283
yhaB
MCAODC_08905: tdcR - transcriptional activator TdcR, at 1,777,539 to 1,777,883
tdcR
Position (kb) 1775
1776
1777 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1774.559 kb on - strand, within garK at 1774.716 kb on + strand, within garK at 1774.716 kb on + strand, within garK at 1774.728 kb on + strand, within garK at 1774.728 kb on + strand, within garK at 1774.729 kb on - strand, within garK at 1774.770 kb on + strand, within garK at 1774.771 kb on - strand, within garK at 1774.821 kb on + strand, within garK at 1774.822 kb on - strand, within garK at 1774.822 kb on - strand, within garK at 1774.872 kb on - strand, within garK at 1774.916 kb on + strand at 1774.916 kb on + strand at 1774.916 kb on + strand at 1774.916 kb on + strand at 1774.916 kb on + strand at 1774.916 kb on + strand at 1774.917 kb on - strand at 1774.917 kb on - strand at 1774.917 kb on - strand at 1774.920 kb on + strand at 1774.920 kb on + strand at 1774.920 kb on + strand at 1774.920 kb on + strand at 1774.920 kb on + strand at 1774.921 kb on - strand at 1774.921 kb on - strand at 1774.921 kb on - strand at 1774.921 kb on - strand at 1774.949 kb on - strand at 1774.949 kb on - strand at 1774.956 kb on + strand at 1774.975 kb on - strand at 1774.975 kb on - strand at 1775.489 kb on - strand at 1775.889 kb on - strand, within MCAODC_08895 at 1776.050 kb on + strand, within MCAODC_08895 at 1776.226 kb on + strand, within MCAODC_08895 at 1776.265 kb on - strand, within MCAODC_08895 at 1776.396 kb on - strand, within MCAODC_08895 at 1776.609 kb on - strand at 1777.078 kb on + strand, within yhaB at 1777.259 kb on + strand at 1777.260 kb on - strand at 1777.314 kb on + strand at 1777.317 kb on + strand at 1777.317 kb on + strand at 1777.326 kb on - strand at 1777.481 kb on - strand at 1777.522 kb on + strand at 1777.523 kb on - strand at 1777.622 kb on + strand, within tdcR at 1777.707 kb on - strand, within tdcR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,774,559 - garK MCAODC_08885 0.60 -3.0 1,774,716 + garK MCAODC_08885 0.73 +0.5 1,774,716 + garK MCAODC_08885 0.73 +0.6 1,774,728 + garK MCAODC_08885 0.75 -0.9 1,774,728 + garK MCAODC_08885 0.75 -0.1 1,774,729 - garK MCAODC_08885 0.75 -0.7 1,774,770 + garK MCAODC_08885 0.78 +1.5 1,774,771 - garK MCAODC_08885 0.78 +0.0 1,774,821 + garK MCAODC_08885 0.83 -2.3 1,774,822 - garK MCAODC_08885 0.83 +0.2 1,774,822 - garK MCAODC_08885 0.83 -2.7 1,774,872 - garK MCAODC_08885 0.87 -1.6 1,774,916 + -0.4 1,774,916 + -1.6 1,774,916 + -2.3 1,774,916 + -0.3 1,774,916 + +0.5 1,774,916 + +0.6 1,774,917 - -2.3 1,774,917 - -0.0 1,774,917 - -1.3 1,774,920 + +0.4 1,774,920 + +0.1 1,774,920 + +0.2 1,774,920 + +0.4 1,774,920 + -0.8 1,774,921 - +1.5 1,774,921 - +0.3 1,774,921 - +0.2 1,774,921 - +0.6 1,774,949 - +0.4 1,774,949 - -0.9 1,774,956 + +0.2 1,774,975 - -3.0 1,774,975 - -1.7 1,775,489 - +0.5 1,775,889 - MCAODC_08895 0.30 -1.6 1,776,050 + MCAODC_08895 0.43 -3.0 1,776,226 + MCAODC_08895 0.58 +1.2 1,776,265 - MCAODC_08895 0.61 +1.1 1,776,396 - MCAODC_08895 0.72 +0.3 1,776,609 - +0.7 1,777,078 + yhaB MCAODC_08900 0.62 -0.4 1,777,259 + +0.3 1,777,260 - -1.3 1,777,314 + +0.1 1,777,317 + -0.0 1,777,317 + +0.1 1,777,326 - +1.6 1,777,481 - +0.3 1,777,522 + +0.6 1,777,523 - -3.4 1,777,622 + tdcR MCAODC_08905 0.24 +0.2 1,777,707 - tdcR MCAODC_08905 0.49 -1.1
Or see this region's nucleotide sequence