Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrE and acrS are separated by 398 nucleotides acrS and yhdU are separated by 2 nucleotides yhdU and yhdJ are separated by 83 nucleotides
MCAODC_08180: acrE - multidrug efflux RND transporter periplasmic adaptor subunit AcrE, at 1,636,215 to 1,637,372
acrE
MCAODC_08185: acrS - multidrug efflux transporter transcriptional repressor AcrS, at 1,637,771 to 1,638,433
acrS
MCAODC_08190: yhdU - Inner membrane protein YhdU, at 1,638,436 to 1,638,615
yhdU
MCAODC_08195: yhdJ - adenine-specific DNA-methyltransferase, at 1,638,699 to 1,639,583
yhdJ
Position (kb) 1637
1638
1639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1636.827 kb on - strand, within acrE at 1636.836 kb on - strand, within acrE at 1636.857 kb on - strand, within acrE at 1636.857 kb on - strand, within acrE at 1636.857 kb on - strand, within acrE at 1636.858 kb on + strand, within acrE at 1636.858 kb on + strand, within acrE at 1636.858 kb on + strand, within acrE at 1636.858 kb on + strand, within acrE at 1636.858 kb on + strand, within acrE at 1636.859 kb on - strand, within acrE at 1636.859 kb on - strand, within acrE at 1636.859 kb on - strand, within acrE at 1636.967 kb on - strand, within acrE at 1636.967 kb on - strand, within acrE at 1636.967 kb on - strand, within acrE at 1636.967 kb on - strand, within acrE at 1636.967 kb on - strand, within acrE at 1637.063 kb on - strand, within acrE at 1637.149 kb on - strand, within acrE at 1637.183 kb on + strand, within acrE at 1637.183 kb on + strand, within acrE at 1637.184 kb on - strand, within acrE at 1637.184 kb on - strand, within acrE at 1637.184 kb on - strand, within acrE at 1637.208 kb on + strand, within acrE at 1637.376 kb on + strand at 1637.377 kb on - strand at 1637.606 kb on + strand at 1637.642 kb on - strand at 1637.899 kb on + strand, within acrS at 1637.912 kb on - strand, within acrS at 1637.912 kb on - strand, within acrS at 1637.915 kb on + strand, within acrS at 1637.916 kb on - strand, within acrS at 1637.916 kb on - strand, within acrS at 1637.916 kb on - strand, within acrS at 1637.947 kb on + strand, within acrS at 1638.065 kb on + strand, within acrS at 1638.066 kb on - strand, within acrS at 1638.108 kb on + strand, within acrS at 1638.246 kb on + strand, within acrS at 1638.246 kb on + strand, within acrS at 1638.266 kb on - strand, within acrS at 1638.360 kb on + strand, within acrS at 1638.361 kb on - strand, within acrS at 1638.558 kb on + strand, within yhdU at 1638.602 kb on + strand at 1638.602 kb on + strand at 1638.602 kb on + strand at 1638.602 kb on + strand at 1638.603 kb on - strand at 1638.603 kb on - strand at 1638.616 kb on + strand at 1638.658 kb on + strand at 1638.689 kb on + strand at 1638.690 kb on - strand at 1638.690 kb on - strand at 1638.700 kb on + strand at 1638.707 kb on + strand at 1638.799 kb on + strand, within yhdJ at 1638.799 kb on + strand, within yhdJ at 1638.799 kb on + strand, within yhdJ at 1638.842 kb on - strand, within yhdJ at 1638.861 kb on - strand, within yhdJ at 1638.891 kb on + strand, within yhdJ at 1638.906 kb on - strand, within yhdJ at 1638.906 kb on - strand, within yhdJ at 1638.906 kb on - strand, within yhdJ at 1638.906 kb on - strand, within yhdJ at 1638.912 kb on - strand, within yhdJ at 1639.025 kb on - strand, within yhdJ at 1639.075 kb on + strand, within yhdJ at 1639.075 kb on + strand, within yhdJ at 1639.075 kb on + strand, within yhdJ at 1639.075 kb on + strand, within yhdJ at 1639.076 kb on - strand, within yhdJ at 1639.076 kb on - strand, within yhdJ at 1639.138 kb on - strand, within yhdJ at 1639.145 kb on + strand, within yhdJ at 1639.146 kb on - strand, within yhdJ at 1639.165 kb on + strand, within yhdJ at 1639.204 kb on + strand, within yhdJ at 1639.204 kb on + strand, within yhdJ at 1639.205 kb on - strand, within yhdJ at 1639.205 kb on - strand, within yhdJ at 1639.205 kb on - strand, within yhdJ at 1639.205 kb on - strand, within yhdJ at 1639.205 kb on - strand, within yhdJ at 1639.205 kb on - strand, within yhdJ at 1639.249 kb on + strand, within yhdJ at 1639.277 kb on + strand, within yhdJ at 1639.336 kb on + strand, within yhdJ at 1639.336 kb on + strand, within yhdJ at 1639.336 kb on + strand, within yhdJ at 1639.336 kb on + strand, within yhdJ at 1639.336 kb on + strand, within yhdJ at 1639.336 kb on + strand, within yhdJ at 1639.337 kb on - strand, within yhdJ at 1639.337 kb on - strand, within yhdJ at 1639.387 kb on - strand, within yhdJ
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,636,827 - acrE MCAODC_08180 0.53 +0.4 1,636,836 - acrE MCAODC_08180 0.54 -0.4 1,636,857 - acrE MCAODC_08180 0.55 -0.6 1,636,857 - acrE MCAODC_08180 0.55 -0.1 1,636,857 - acrE MCAODC_08180 0.55 -1.5 1,636,858 + acrE MCAODC_08180 0.56 +0.2 1,636,858 + acrE MCAODC_08180 0.56 -2.9 1,636,858 + acrE MCAODC_08180 0.56 +0.8 1,636,858 + acrE MCAODC_08180 0.56 +1.4 1,636,858 + acrE MCAODC_08180 0.56 -1.3 1,636,859 - acrE MCAODC_08180 0.56 -2.5 1,636,859 - acrE MCAODC_08180 0.56 +0.1 1,636,859 - acrE MCAODC_08180 0.56 +0.3 1,636,967 - acrE MCAODC_08180 0.65 -0.2 1,636,967 - acrE MCAODC_08180 0.65 +1.1 1,636,967 - acrE MCAODC_08180 0.65 +0.0 1,636,967 - acrE MCAODC_08180 0.65 +0.6 1,636,967 - acrE MCAODC_08180 0.65 -0.7 1,637,063 - acrE MCAODC_08180 0.73 -2.9 1,637,149 - acrE MCAODC_08180 0.81 +1.1 1,637,183 + acrE MCAODC_08180 0.84 +0.8 1,637,183 + acrE MCAODC_08180 0.84 -2.0 1,637,184 - acrE MCAODC_08180 0.84 +0.1 1,637,184 - acrE MCAODC_08180 0.84 +0.2 1,637,184 - acrE MCAODC_08180 0.84 +0.1 1,637,208 + acrE MCAODC_08180 0.86 +0.5 1,637,376 + -0.4 1,637,377 - +0.9 1,637,606 + +1.4 1,637,642 - -0.8 1,637,899 + acrS MCAODC_08185 0.19 +0.3 1,637,912 - acrS MCAODC_08185 0.21 -0.1 1,637,912 - acrS MCAODC_08185 0.21 -1.5 1,637,915 + acrS MCAODC_08185 0.22 +1.8 1,637,916 - acrS MCAODC_08185 0.22 +1.7 1,637,916 - acrS MCAODC_08185 0.22 -2.0 1,637,916 - acrS MCAODC_08185 0.22 -0.4 1,637,947 + acrS MCAODC_08185 0.27 -0.6 1,638,065 + acrS MCAODC_08185 0.44 +0.3 1,638,066 - acrS MCAODC_08185 0.44 +0.1 1,638,108 + acrS MCAODC_08185 0.51 +0.3 1,638,246 + acrS MCAODC_08185 0.72 +0.4 1,638,246 + acrS MCAODC_08185 0.72 -1.0 1,638,266 - acrS MCAODC_08185 0.75 -0.5 1,638,360 + acrS MCAODC_08185 0.89 -0.0 1,638,361 - acrS MCAODC_08185 0.89 +2.1 1,638,558 + yhdU MCAODC_08190 0.68 -0.2 1,638,602 + +0.3 1,638,602 + -1.4 1,638,602 + -0.4 1,638,602 + -1.2 1,638,603 - -0.1 1,638,603 - -0.2 1,638,616 + -0.0 1,638,658 + +0.1 1,638,689 + +1.3 1,638,690 - +1.1 1,638,690 - +1.5 1,638,700 + -0.2 1,638,707 + +0.1 1,638,799 + yhdJ MCAODC_08195 0.11 -1.3 1,638,799 + yhdJ MCAODC_08195 0.11 +0.2 1,638,799 + yhdJ MCAODC_08195 0.11 -1.8 1,638,842 - yhdJ MCAODC_08195 0.16 -3.3 1,638,861 - yhdJ MCAODC_08195 0.18 +1.0 1,638,891 + yhdJ MCAODC_08195 0.22 +0.6 1,638,906 - yhdJ MCAODC_08195 0.23 -1.2 1,638,906 - yhdJ MCAODC_08195 0.23 +0.4 1,638,906 - yhdJ MCAODC_08195 0.23 -0.8 1,638,906 - yhdJ MCAODC_08195 0.23 -0.6 1,638,912 - yhdJ MCAODC_08195 0.24 -3.0 1,639,025 - yhdJ MCAODC_08195 0.37 -1.2 1,639,075 + yhdJ MCAODC_08195 0.42 -2.0 1,639,075 + yhdJ MCAODC_08195 0.42 +1.4 1,639,075 + yhdJ MCAODC_08195 0.42 +0.3 1,639,075 + yhdJ MCAODC_08195 0.42 -0.3 1,639,076 - yhdJ MCAODC_08195 0.43 +0.6 1,639,076 - yhdJ MCAODC_08195 0.43 +0.8 1,639,138 - yhdJ MCAODC_08195 0.50 +0.7 1,639,145 + yhdJ MCAODC_08195 0.50 -1.2 1,639,146 - yhdJ MCAODC_08195 0.51 +0.2 1,639,165 + yhdJ MCAODC_08195 0.53 +0.0 1,639,204 + yhdJ MCAODC_08195 0.57 +0.0 1,639,204 + yhdJ MCAODC_08195 0.57 -1.2 1,639,205 - yhdJ MCAODC_08195 0.57 +0.2 1,639,205 - yhdJ MCAODC_08195 0.57 +1.9 1,639,205 - yhdJ MCAODC_08195 0.57 -1.1 1,639,205 - yhdJ MCAODC_08195 0.57 +0.5 1,639,205 - yhdJ MCAODC_08195 0.57 -1.2 1,639,205 - yhdJ MCAODC_08195 0.57 -0.5 1,639,249 + yhdJ MCAODC_08195 0.62 +0.1 1,639,277 + yhdJ MCAODC_08195 0.65 -0.5 1,639,336 + yhdJ MCAODC_08195 0.72 -0.8 1,639,336 + yhdJ MCAODC_08195 0.72 +1.6 1,639,336 + yhdJ MCAODC_08195 0.72 +0.5 1,639,336 + yhdJ MCAODC_08195 0.72 -0.1 1,639,336 + yhdJ MCAODC_08195 0.72 +0.6 1,639,336 + yhdJ MCAODC_08195 0.72 +0.5 1,639,337 - yhdJ MCAODC_08195 0.72 -0.2 1,639,337 - yhdJ MCAODC_08195 0.72 +0.3 1,639,387 - yhdJ MCAODC_08195 0.78 +0.6
Or see this region's nucleotide sequence