Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yrdA and 16S_rrna are separated by 472 nucleotides 16S_rrna and Ile_trna are separated by 68 nucleotides Ile_trna and Ala_trna are separated by 42 nucleotides Ala_trna and 23S_rrna are separated by 183 nucleotides
MCAODC_08095: yrdA - Protein YrdA, at 1,621,393 to 1,621,947
yrdA
MCAODC_08100: 16S_rrna - 16S ribosomal RNA, at 1,622,420 to 1,623,961
_rrna
MCAODC_08105: Ile_trna - tRNA-Ile(gat), at 1,624,030 to 1,624,106
_trna
MCAODC_08110: Ala_trna - tRNA-Ala(tgc), at 1,624,149 to 1,624,224
_trna
MCAODC_08120: 23S_rrna - 23S ribosomal RNA, at 1,624,408 to 1,627,310
_rrna
Position (kb)
1622
1623
1624 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1621.424 kb on + strand at 1621.425 kb on - strand at 1621.446 kb on - strand at 1621.446 kb on - strand at 1621.449 kb on + strand, within yrdA at 1621.449 kb on + strand, within yrdA at 1621.449 kb on + strand, within yrdA at 1621.450 kb on - strand, within yrdA at 1621.450 kb on - strand, within yrdA at 1621.490 kb on - strand, within yrdA at 1621.490 kb on - strand, within yrdA at 1621.524 kb on - strand, within yrdA at 1621.524 kb on - strand, within yrdA at 1621.524 kb on - strand, within yrdA at 1621.548 kb on + strand, within yrdA at 1621.549 kb on - strand, within yrdA at 1621.566 kb on + strand, within yrdA at 1621.595 kb on - strand, within yrdA at 1621.595 kb on - strand, within yrdA at 1621.597 kb on + strand, within yrdA at 1621.598 kb on - strand, within yrdA at 1621.727 kb on + strand, within yrdA at 1621.737 kb on + strand, within yrdA at 1621.738 kb on - strand, within yrdA at 1621.755 kb on + strand, within yrdA at 1621.755 kb on + strand, within yrdA at 1621.755 kb on + strand, within yrdA at 1621.755 kb on + strand, within yrdA at 1621.755 kb on + strand, within yrdA at 1621.755 kb on + strand, within yrdA at 1621.756 kb on - strand, within yrdA at 1621.756 kb on - strand, within yrdA at 1621.756 kb on - strand, within yrdA at 1621.756 kb on - strand, within yrdA at 1621.792 kb on + strand, within yrdA at 1621.792 kb on + strand, within yrdA at 1621.793 kb on - strand, within yrdA at 1621.793 kb on - strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.796 kb on + strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.797 kb on - strand, within yrdA at 1621.801 kb on + strand, within yrdA at 1621.801 kb on + strand, within yrdA at 1621.801 kb on + strand, within yrdA at 1621.801 kb on + strand, within yrdA at 1621.801 kb on + strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.802 kb on - strand, within yrdA at 1621.878 kb on + strand, within yrdA at 1621.879 kb on - strand, within yrdA at 1621.879 kb on - strand, within yrdA at 1621.892 kb on - strand at 1621.934 kb on - strand at 1621.947 kb on + strand at 1621.947 kb on + strand at 1621.947 kb on + strand at 1621.947 kb on + strand at 1621.947 kb on + strand at 1621.947 kb on + strand at 1621.947 kb on + strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.948 kb on - strand at 1621.951 kb on + strand at 1621.952 kb on - strand at 1621.952 kb on - strand at 1621.952 kb on - strand at 1621.963 kb on - strand at 1621.972 kb on - strand at 1621.975 kb on - strand at 1621.992 kb on + strand at 1621.993 kb on - strand at 1621.993 kb on - strand at 1622.014 kb on + strand at 1622.015 kb on - strand at 1622.015 kb on - strand at 1622.097 kb on + strand at 1622.122 kb on + strand at 1622.123 kb on - strand at 1622.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,621,424 + +0.4 1,621,425 - -0.2 1,621,446 - +0.1 1,621,446 - +1.7 1,621,449 + yrdA MCAODC_08095 0.10 -0.4 1,621,449 + yrdA MCAODC_08095 0.10 -0.8 1,621,449 + yrdA MCAODC_08095 0.10 +0.6 1,621,450 - yrdA MCAODC_08095 0.10 +0.6 1,621,450 - yrdA MCAODC_08095 0.10 +0.9 1,621,490 - yrdA MCAODC_08095 0.17 -4.0 1,621,490 - yrdA MCAODC_08095 0.17 +1.1 1,621,524 - yrdA MCAODC_08095 0.24 +0.2 1,621,524 - yrdA MCAODC_08095 0.24 +0.5 1,621,524 - yrdA MCAODC_08095 0.24 +0.2 1,621,548 + yrdA MCAODC_08095 0.28 +1.0 1,621,549 - yrdA MCAODC_08095 0.28 +1.1 1,621,566 + yrdA MCAODC_08095 0.31 -0.2 1,621,595 - yrdA MCAODC_08095 0.36 +0.4 1,621,595 - yrdA MCAODC_08095 0.36 -0.3 1,621,597 + yrdA MCAODC_08095 0.37 -0.4 1,621,598 - yrdA MCAODC_08095 0.37 -0.2 1,621,727 + yrdA MCAODC_08095 0.60 +1.1 1,621,737 + yrdA MCAODC_08095 0.62 -0.1 1,621,738 - yrdA MCAODC_08095 0.62 +1.0 1,621,755 + yrdA MCAODC_08095 0.65 +0.8 1,621,755 + yrdA MCAODC_08095 0.65 -0.5 1,621,755 + yrdA MCAODC_08095 0.65 -0.9 1,621,755 + yrdA MCAODC_08095 0.65 +1.0 1,621,755 + yrdA MCAODC_08095 0.65 -1.1 1,621,755 + yrdA MCAODC_08095 0.65 +0.6 1,621,756 - yrdA MCAODC_08095 0.65 -0.5 1,621,756 - yrdA MCAODC_08095 0.65 +1.0 1,621,756 - yrdA MCAODC_08095 0.65 +2.0 1,621,756 - yrdA MCAODC_08095 0.65 -0.2 1,621,792 + yrdA MCAODC_08095 0.72 +0.6 1,621,792 + yrdA MCAODC_08095 0.72 -2.3 1,621,793 - yrdA MCAODC_08095 0.72 -3.1 1,621,793 - yrdA MCAODC_08095 0.72 -0.5 1,621,796 + yrdA MCAODC_08095 0.73 +1.6 1,621,796 + yrdA MCAODC_08095 0.73 +1.5 1,621,796 + yrdA MCAODC_08095 0.73 -3.4 1,621,796 + yrdA MCAODC_08095 0.73 -1.2 1,621,796 + yrdA MCAODC_08095 0.73 -0.5 1,621,796 + yrdA MCAODC_08095 0.73 -0.3 1,621,796 + yrdA MCAODC_08095 0.73 +0.5 1,621,796 + yrdA MCAODC_08095 0.73 +0.7 1,621,796 + yrdA MCAODC_08095 0.73 -0.7 1,621,796 + yrdA MCAODC_08095 0.73 +0.7 1,621,796 + yrdA MCAODC_08095 0.73 -0.9 1,621,796 + yrdA MCAODC_08095 0.73 +1.1 1,621,797 - yrdA MCAODC_08095 0.73 -3.1 1,621,797 - yrdA MCAODC_08095 0.73 -0.6 1,621,797 - yrdA MCAODC_08095 0.73 -0.1 1,621,797 - yrdA MCAODC_08095 0.73 +0.6 1,621,797 - yrdA MCAODC_08095 0.73 -0.3 1,621,797 - yrdA MCAODC_08095 0.73 -0.7 1,621,797 - yrdA MCAODC_08095 0.73 +0.8 1,621,797 - yrdA MCAODC_08095 0.73 -0.1 1,621,797 - yrdA MCAODC_08095 0.73 +0.1 1,621,797 - yrdA MCAODC_08095 0.73 +1.1 1,621,801 + yrdA MCAODC_08095 0.74 -2.8 1,621,801 + yrdA MCAODC_08095 0.74 -0.7 1,621,801 + yrdA MCAODC_08095 0.74 -0.3 1,621,801 + yrdA MCAODC_08095 0.74 +0.2 1,621,801 + yrdA MCAODC_08095 0.74 -0.9 1,621,802 - yrdA MCAODC_08095 0.74 -0.0 1,621,802 - yrdA MCAODC_08095 0.74 +1.0 1,621,802 - yrdA MCAODC_08095 0.74 -0.0 1,621,802 - yrdA MCAODC_08095 0.74 -1.4 1,621,802 - yrdA MCAODC_08095 0.74 +0.2 1,621,802 - yrdA MCAODC_08095 0.74 +0.0 1,621,802 - yrdA MCAODC_08095 0.74 -1.4 1,621,878 + yrdA MCAODC_08095 0.87 -2.3 1,621,879 - yrdA MCAODC_08095 0.88 +0.8 1,621,879 - yrdA MCAODC_08095 0.88 +1.5 1,621,892 - +0.5 1,621,934 - -0.5 1,621,947 + -1.8 1,621,947 + +0.7 1,621,947 + +0.5 1,621,947 + -0.3 1,621,947 + -2.6 1,621,947 + +1.9 1,621,947 + -0.6 1,621,948 - -0.1 1,621,948 - -1.2 1,621,948 - -1.7 1,621,948 - -0.2 1,621,948 - -0.6 1,621,948 - -0.1 1,621,948 - -0.0 1,621,948 - +2.2 1,621,948 - +0.2 1,621,948 - -0.2 1,621,948 - -2.0 1,621,948 - -0.4 1,621,948 - -1.5 1,621,951 + +2.7 1,621,952 - -0.0 1,621,952 - -1.0 1,621,952 - -0.6 1,621,963 - +1.2 1,621,972 - +1.1 1,621,975 - +0.6 1,621,992 + +1.8 1,621,993 - +0.4 1,621,993 - +0.2 1,622,014 + -0.4 1,622,015 - -0.5 1,622,015 - -1.3 1,622,097 + -0.3 1,622,122 + +0.5 1,622,123 - +0.8 1,622,123 - +3.0
Or see this region's nucleotide sequence