Strain Fitness in Escherichia coli ECRC101 around MCAODC_08100

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyrdA and 16S_rrna are separated by 472 nucleotides16S_rrna and Ile_trna are separated by 68 nucleotidesIle_trna and Ala_trna are separated by 42 nucleotidesAla_trna and 23S_rrna are separated by 183 nucleotides MCAODC_08095: yrdA - Protein YrdA, at 1,621,393 to 1,621,947 yrdA MCAODC_08100: 16S_rrna - 16S ribosomal RNA, at 1,622,420 to 1,623,961 _rrna MCAODC_08105: Ile_trna - tRNA-Ile(gat), at 1,624,030 to 1,624,106 _trna MCAODC_08110: Ala_trna - tRNA-Ala(tgc), at 1,624,149 to 1,624,224 _trna MCAODC_08120: 23S_rrna - 23S ribosomal RNA, at 1,624,408 to 1,627,310 _rrna Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1621.424 kb on + strandat 1621.425 kb on - strandat 1621.446 kb on - strandat 1621.446 kb on - strandat 1621.449 kb on + strand, within yrdAat 1621.449 kb on + strand, within yrdAat 1621.449 kb on + strand, within yrdAat 1621.450 kb on - strand, within yrdAat 1621.450 kb on - strand, within yrdAat 1621.490 kb on - strand, within yrdAat 1621.490 kb on - strand, within yrdAat 1621.524 kb on - strand, within yrdAat 1621.524 kb on - strand, within yrdAat 1621.524 kb on - strand, within yrdAat 1621.548 kb on + strand, within yrdAat 1621.549 kb on - strand, within yrdAat 1621.566 kb on + strand, within yrdAat 1621.595 kb on - strand, within yrdAat 1621.595 kb on - strand, within yrdAat 1621.597 kb on + strand, within yrdAat 1621.598 kb on - strand, within yrdAat 1621.727 kb on + strand, within yrdAat 1621.737 kb on + strand, within yrdAat 1621.738 kb on - strand, within yrdAat 1621.755 kb on + strand, within yrdAat 1621.755 kb on + strand, within yrdAat 1621.755 kb on + strand, within yrdAat 1621.755 kb on + strand, within yrdAat 1621.755 kb on + strand, within yrdAat 1621.755 kb on + strand, within yrdAat 1621.756 kb on - strand, within yrdAat 1621.756 kb on - strand, within yrdAat 1621.756 kb on - strand, within yrdAat 1621.756 kb on - strand, within yrdAat 1621.792 kb on + strand, within yrdAat 1621.792 kb on + strand, within yrdAat 1621.793 kb on - strand, within yrdAat 1621.793 kb on - strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.796 kb on + strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.797 kb on - strand, within yrdAat 1621.801 kb on + strand, within yrdAat 1621.801 kb on + strand, within yrdAat 1621.801 kb on + strand, within yrdAat 1621.801 kb on + strand, within yrdAat 1621.801 kb on + strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.802 kb on - strand, within yrdAat 1621.878 kb on + strand, within yrdAat 1621.879 kb on - strand, within yrdAat 1621.879 kb on - strand, within yrdAat 1621.892 kb on - strandat 1621.934 kb on - strandat 1621.947 kb on + strandat 1621.947 kb on + strandat 1621.947 kb on + strandat 1621.947 kb on + strandat 1621.947 kb on + strandat 1621.947 kb on + strandat 1621.947 kb on + strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.948 kb on - strandat 1621.951 kb on + strandat 1621.952 kb on - strandat 1621.952 kb on - strandat 1621.952 kb on - strandat 1621.963 kb on - strandat 1621.972 kb on - strandat 1621.975 kb on - strandat 1621.992 kb on + strandat 1621.993 kb on - strandat 1621.993 kb on - strandat 1622.014 kb on + strandat 1622.015 kb on - strandat 1622.015 kb on - strandat 1622.097 kb on + strandat 1622.122 kb on + strandat 1622.123 kb on - strandat 1622.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,621,424 + +0.4
1,621,425 - -0.2
1,621,446 - +0.1
1,621,446 - +1.7
1,621,449 + yrdA MCAODC_08095 0.10 -0.4
1,621,449 + yrdA MCAODC_08095 0.10 -0.8
1,621,449 + yrdA MCAODC_08095 0.10 +0.6
1,621,450 - yrdA MCAODC_08095 0.10 +0.6
1,621,450 - yrdA MCAODC_08095 0.10 +0.9
1,621,490 - yrdA MCAODC_08095 0.17 -4.0
1,621,490 - yrdA MCAODC_08095 0.17 +1.1
1,621,524 - yrdA MCAODC_08095 0.24 +0.2
1,621,524 - yrdA MCAODC_08095 0.24 +0.5
1,621,524 - yrdA MCAODC_08095 0.24 +0.2
1,621,548 + yrdA MCAODC_08095 0.28 +1.0
1,621,549 - yrdA MCAODC_08095 0.28 +1.1
1,621,566 + yrdA MCAODC_08095 0.31 -0.2
1,621,595 - yrdA MCAODC_08095 0.36 +0.4
1,621,595 - yrdA MCAODC_08095 0.36 -0.3
1,621,597 + yrdA MCAODC_08095 0.37 -0.4
1,621,598 - yrdA MCAODC_08095 0.37 -0.2
1,621,727 + yrdA MCAODC_08095 0.60 +1.1
1,621,737 + yrdA MCAODC_08095 0.62 -0.1
1,621,738 - yrdA MCAODC_08095 0.62 +1.0
1,621,755 + yrdA MCAODC_08095 0.65 +0.8
1,621,755 + yrdA MCAODC_08095 0.65 -0.5
1,621,755 + yrdA MCAODC_08095 0.65 -0.9
1,621,755 + yrdA MCAODC_08095 0.65 +1.0
1,621,755 + yrdA MCAODC_08095 0.65 -1.1
1,621,755 + yrdA MCAODC_08095 0.65 +0.6
1,621,756 - yrdA MCAODC_08095 0.65 -0.5
1,621,756 - yrdA MCAODC_08095 0.65 +1.0
1,621,756 - yrdA MCAODC_08095 0.65 +2.0
1,621,756 - yrdA MCAODC_08095 0.65 -0.2
1,621,792 + yrdA MCAODC_08095 0.72 +0.6
1,621,792 + yrdA MCAODC_08095 0.72 -2.3
1,621,793 - yrdA MCAODC_08095 0.72 -3.1
1,621,793 - yrdA MCAODC_08095 0.72 -0.5
1,621,796 + yrdA MCAODC_08095 0.73 +1.6
1,621,796 + yrdA MCAODC_08095 0.73 +1.5
1,621,796 + yrdA MCAODC_08095 0.73 -3.4
1,621,796 + yrdA MCAODC_08095 0.73 -1.2
1,621,796 + yrdA MCAODC_08095 0.73 -0.5
1,621,796 + yrdA MCAODC_08095 0.73 -0.3
1,621,796 + yrdA MCAODC_08095 0.73 +0.5
1,621,796 + yrdA MCAODC_08095 0.73 +0.7
1,621,796 + yrdA MCAODC_08095 0.73 -0.7
1,621,796 + yrdA MCAODC_08095 0.73 +0.7
1,621,796 + yrdA MCAODC_08095 0.73 -0.9
1,621,796 + yrdA MCAODC_08095 0.73 +1.1
1,621,797 - yrdA MCAODC_08095 0.73 -3.1
1,621,797 - yrdA MCAODC_08095 0.73 -0.6
1,621,797 - yrdA MCAODC_08095 0.73 -0.1
1,621,797 - yrdA MCAODC_08095 0.73 +0.6
1,621,797 - yrdA MCAODC_08095 0.73 -0.3
1,621,797 - yrdA MCAODC_08095 0.73 -0.7
1,621,797 - yrdA MCAODC_08095 0.73 +0.8
1,621,797 - yrdA MCAODC_08095 0.73 -0.1
1,621,797 - yrdA MCAODC_08095 0.73 +0.1
1,621,797 - yrdA MCAODC_08095 0.73 +1.1
1,621,801 + yrdA MCAODC_08095 0.74 -2.8
1,621,801 + yrdA MCAODC_08095 0.74 -0.7
1,621,801 + yrdA MCAODC_08095 0.74 -0.3
1,621,801 + yrdA MCAODC_08095 0.74 +0.2
1,621,801 + yrdA MCAODC_08095 0.74 -0.9
1,621,802 - yrdA MCAODC_08095 0.74 -0.0
1,621,802 - yrdA MCAODC_08095 0.74 +1.0
1,621,802 - yrdA MCAODC_08095 0.74 -0.0
1,621,802 - yrdA MCAODC_08095 0.74 -1.4
1,621,802 - yrdA MCAODC_08095 0.74 +0.2
1,621,802 - yrdA MCAODC_08095 0.74 +0.0
1,621,802 - yrdA MCAODC_08095 0.74 -1.4
1,621,878 + yrdA MCAODC_08095 0.87 -2.3
1,621,879 - yrdA MCAODC_08095 0.88 +0.8
1,621,879 - yrdA MCAODC_08095 0.88 +1.5
1,621,892 - +0.5
1,621,934 - -0.5
1,621,947 + -1.8
1,621,947 + +0.7
1,621,947 + +0.5
1,621,947 + -0.3
1,621,947 + -2.6
1,621,947 + +1.9
1,621,947 + -0.6
1,621,948 - -0.1
1,621,948 - -1.2
1,621,948 - -1.7
1,621,948 - -0.2
1,621,948 - -0.6
1,621,948 - -0.1
1,621,948 - -0.0
1,621,948 - +2.2
1,621,948 - +0.2
1,621,948 - -0.2
1,621,948 - -2.0
1,621,948 - -0.4
1,621,948 - -1.5
1,621,951 + +2.7
1,621,952 - -0.0
1,621,952 - -1.0
1,621,952 - -0.6
1,621,963 - +1.2
1,621,972 - +1.1
1,621,975 - +0.6
1,621,992 + +1.8
1,621,993 - +0.4
1,621,993 - +0.2
1,622,014 + -0.4
1,622,015 - -0.5
1,622,015 - -1.3
1,622,097 + -0.3
1,622,122 + +0.5
1,622,123 - +0.8
1,622,123 - +3.0

Or see this region's nucleotide sequence