Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mrcA and hofM are separated by 119 nucleotides hofM and hofN overlap by 17 nucleotides hofN and hofO overlap by 17 nucleotides hofO and hofP overlap by 11 nucleotides
MCAODC_07610: mrcA - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 1,548,577 to 1,551,129
mrcA
MCAODC_07615: hofM - DNA utilization protein HofM, at 1,551,249 to 1,552,043
hofM
MCAODC_07620: hofN - Putative DNA utilization protein HofN, at 1,552,027 to 1,552,566
hofN
MCAODC_07625: hofO - DNA utilization protein HofO, at 1,552,550 to 1,552,990
hofO
MCAODC_07630: hofP - DNA utilization protein HofP, at 1,552,980 to 1,553,384
hofP
Position (kb) 1551
1552
1553 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1550.267 kb on + strand, within mrcA at 1550.267 kb on + strand, within mrcA at 1550.268 kb on - strand, within mrcA at 1550.288 kb on + strand, within mrcA at 1550.310 kb on + strand, within mrcA at 1550.310 kb on + strand, within mrcA at 1550.311 kb on - strand, within mrcA at 1550.312 kb on + strand, within mrcA at 1550.312 kb on + strand, within mrcA at 1550.312 kb on + strand, within mrcA at 1550.312 kb on + strand, within mrcA at 1550.312 kb on + strand, within mrcA at 1550.313 kb on - strand, within mrcA at 1550.313 kb on - strand, within mrcA at 1550.313 kb on - strand, within mrcA at 1550.313 kb on - strand, within mrcA at 1550.313 kb on - strand, within mrcA at 1550.313 kb on - strand, within mrcA at 1550.375 kb on + strand, within mrcA at 1550.380 kb on - strand, within mrcA at 1550.386 kb on - strand, within mrcA at 1550.427 kb on + strand, within mrcA at 1550.427 kb on + strand, within mrcA at 1550.427 kb on + strand, within mrcA at 1550.428 kb on - strand, within mrcA at 1550.428 kb on - strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.429 kb on + strand, within mrcA at 1550.430 kb on - strand, within mrcA at 1550.430 kb on - strand, within mrcA at 1550.430 kb on - strand, within mrcA at 1550.430 kb on - strand, within mrcA at 1550.582 kb on + strand, within mrcA at 1550.582 kb on + strand, within mrcA at 1550.583 kb on - strand, within mrcA at 1550.609 kb on + strand, within mrcA at 1550.609 kb on + strand, within mrcA at 1550.610 kb on - strand, within mrcA at 1550.610 kb on - strand, within mrcA at 1550.610 kb on - strand, within mrcA at 1550.628 kb on - strand, within mrcA at 1550.706 kb on + strand, within mrcA at 1550.713 kb on - strand, within mrcA at 1550.772 kb on + strand, within mrcA at 1550.773 kb on - strand, within mrcA at 1550.773 kb on - strand, within mrcA at 1550.773 kb on - strand, within mrcA at 1550.773 kb on - strand, within mrcA at 1550.773 kb on - strand, within mrcA at 1550.773 kb on - strand, within mrcA at 1550.858 kb on + strand, within mrcA at 1550.858 kb on + strand, within mrcA at 1550.858 kb on + strand, within mrcA at 1550.859 kb on - strand, within mrcA at 1550.859 kb on - strand, within mrcA at 1550.884 kb on - strand at 1550.923 kb on - strand at 1550.931 kb on + strand at 1550.932 kb on - strand at 1550.948 kb on + strand at 1550.978 kb on + strand at 1551.013 kb on + strand at 1551.013 kb on + strand at 1551.014 kb on - strand at 1551.014 kb on - strand at 1551.047 kb on + strand at 1551.048 kb on - strand at 1551.048 kb on - strand at 1551.054 kb on - strand at 1551.055 kb on + strand at 1551.055 kb on + strand at 1551.056 kb on - strand at 1551.056 kb on - strand at 1551.119 kb on - strand at 1551.119 kb on - strand at 1551.166 kb on + strand at 1551.184 kb on + strand at 1551.184 kb on + strand at 1551.184 kb on + strand at 1551.185 kb on - strand at 1551.185 kb on - strand at 1551.185 kb on - strand at 1551.186 kb on + strand at 1551.186 kb on + strand at 1551.186 kb on + strand at 1551.186 kb on + strand at 1551.187 kb on - strand at 1551.209 kb on + strand at 1551.209 kb on + strand at 1551.209 kb on + strand at 1551.209 kb on + strand at 1551.209 kb on + strand at 1551.210 kb on - strand at 1551.210 kb on - strand at 1551.210 kb on - strand at 1551.210 kb on - strand at 1551.210 kb on - strand at 1551.210 kb on - strand at 1551.210 kb on - strand at 1551.211 kb on + strand at 1551.212 kb on - strand at 1551.233 kb on + strand at 1551.258 kb on - strand at 1551.283 kb on + strand at 1551.283 kb on + strand at 1551.283 kb on + strand at 1551.283 kb on + strand at 1551.283 kb on + strand at 1551.284 kb on - strand at 1551.284 kb on - strand at 1551.284 kb on - strand at 1551.416 kb on + strand, within hofM at 1551.416 kb on + strand, within hofM at 1551.417 kb on - strand, within hofM at 1551.417 kb on - strand, within hofM at 1551.428 kb on - strand, within hofM at 1551.493 kb on + strand, within hofM at 1551.494 kb on - strand, within hofM at 1551.494 kb on - strand, within hofM at 1551.636 kb on + strand, within hofM at 1551.636 kb on + strand, within hofM at 1551.637 kb on - strand, within hofM at 1551.637 kb on - strand, within hofM at 1551.637 kb on - strand, within hofM at 1551.638 kb on + strand, within hofM at 1551.639 kb on - strand, within hofM at 1551.639 kb on - strand, within hofM at 1551.681 kb on - strand, within hofM at 1551.681 kb on - strand, within hofM at 1551.710 kb on + strand, within hofM at 1551.711 kb on - strand, within hofM at 1551.711 kb on - strand, within hofM at 1551.711 kb on - strand, within hofM at 1551.739 kb on + strand, within hofM at 1551.739 kb on + strand, within hofM at 1551.739 kb on + strand, within hofM at 1551.761 kb on - strand, within hofM at 1551.857 kb on + strand, within hofM at 1551.911 kb on - strand, within hofM at 1552.022 kb on + strand at 1552.022 kb on + strand at 1552.139 kb on + strand, within hofN at 1552.139 kb on + strand, within hofN at 1552.140 kb on - strand, within hofN at 1552.142 kb on + strand, within hofN at 1552.142 kb on + strand, within hofN at 1552.142 kb on + strand, within hofN at 1552.143 kb on - strand, within hofN at 1552.220 kb on + strand, within hofN at 1552.220 kb on + strand, within hofN at 1552.343 kb on + strand, within hofN at 1552.371 kb on - strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.533 kb on - strand at 1552.533 kb on - strand at 1552.629 kb on + strand, within hofO at 1552.629 kb on + strand, within hofO at 1552.630 kb on - strand, within hofO at 1552.630 kb on - strand, within hofO at 1552.630 kb on - strand, within hofO at 1552.633 kb on + strand, within hofO at 1552.633 kb on + strand, within hofO at 1552.633 kb on + strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.988 kb on + strand at 1553.009 kb on + strand at 1553.010 kb on - strand at 1553.010 kb on - strand at 1553.010 kb on - strand at 1553.026 kb on + strand, within hofP at 1553.027 kb on - strand, within hofP
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,550,267 + mrcA MCAODC_07610 0.66 -1.6 1,550,267 + mrcA MCAODC_07610 0.66 +0.0 1,550,268 - mrcA MCAODC_07610 0.66 -1.4 1,550,288 + mrcA MCAODC_07610 0.67 +0.2 1,550,310 + mrcA MCAODC_07610 0.68 +0.3 1,550,310 + mrcA MCAODC_07610 0.68 -1.0 1,550,311 - mrcA MCAODC_07610 0.68 -1.1 1,550,312 + mrcA MCAODC_07610 0.68 +0.1 1,550,312 + mrcA MCAODC_07610 0.68 +0.3 1,550,312 + mrcA MCAODC_07610 0.68 +0.5 1,550,312 + mrcA MCAODC_07610 0.68 -4.0 1,550,312 + mrcA MCAODC_07610 0.68 -2.2 1,550,313 - mrcA MCAODC_07610 0.68 +2.4 1,550,313 - mrcA MCAODC_07610 0.68 -0.4 1,550,313 - mrcA MCAODC_07610 0.68 -1.4 1,550,313 - mrcA MCAODC_07610 0.68 -0.4 1,550,313 - mrcA MCAODC_07610 0.68 -0.6 1,550,313 - mrcA MCAODC_07610 0.68 +0.0 1,550,375 + mrcA MCAODC_07610 0.70 +0.7 1,550,380 - mrcA MCAODC_07610 0.71 +0.4 1,550,386 - mrcA MCAODC_07610 0.71 -1.0 1,550,427 + mrcA MCAODC_07610 0.72 +1.6 1,550,427 + mrcA MCAODC_07610 0.72 -0.7 1,550,427 + mrcA MCAODC_07610 0.72 -2.6 1,550,428 - mrcA MCAODC_07610 0.73 +2.4 1,550,428 - mrcA MCAODC_07610 0.73 +1.1 1,550,429 + mrcA MCAODC_07610 0.73 -2.2 1,550,429 + mrcA MCAODC_07610 0.73 +0.3 1,550,429 + mrcA MCAODC_07610 0.73 -2.4 1,550,429 + mrcA MCAODC_07610 0.73 -2.1 1,550,429 + mrcA MCAODC_07610 0.73 +0.4 1,550,429 + mrcA MCAODC_07610 0.73 -0.3 1,550,429 + mrcA MCAODC_07610 0.73 -0.2 1,550,429 + mrcA MCAODC_07610 0.73 -0.7 1,550,429 + mrcA MCAODC_07610 0.73 -0.7 1,550,429 + mrcA MCAODC_07610 0.73 +0.9 1,550,430 - mrcA MCAODC_07610 0.73 -3.4 1,550,430 - mrcA MCAODC_07610 0.73 -0.7 1,550,430 - mrcA MCAODC_07610 0.73 -4.5 1,550,430 - mrcA MCAODC_07610 0.73 +0.3 1,550,582 + mrcA MCAODC_07610 0.79 +0.2 1,550,582 + mrcA MCAODC_07610 0.79 -0.0 1,550,583 - mrcA MCAODC_07610 0.79 -0.5 1,550,609 + mrcA MCAODC_07610 0.80 -0.1 1,550,609 + mrcA MCAODC_07610 0.80 +0.2 1,550,610 - mrcA MCAODC_07610 0.80 -0.2 1,550,610 - mrcA MCAODC_07610 0.80 -0.4 1,550,610 - mrcA MCAODC_07610 0.80 -2.0 1,550,628 - mrcA MCAODC_07610 0.80 -0.4 1,550,706 + mrcA MCAODC_07610 0.83 -1.1 1,550,713 - mrcA MCAODC_07610 0.84 +0.0 1,550,772 + mrcA MCAODC_07610 0.86 +1.5 1,550,773 - mrcA MCAODC_07610 0.86 +0.8 1,550,773 - mrcA MCAODC_07610 0.86 +0.5 1,550,773 - mrcA MCAODC_07610 0.86 -0.0 1,550,773 - mrcA MCAODC_07610 0.86 +0.9 1,550,773 - mrcA MCAODC_07610 0.86 +0.0 1,550,773 - mrcA MCAODC_07610 0.86 +0.2 1,550,858 + mrcA MCAODC_07610 0.89 +0.8 1,550,858 + mrcA MCAODC_07610 0.89 +0.1 1,550,858 + mrcA MCAODC_07610 0.89 +1.5 1,550,859 - mrcA MCAODC_07610 0.89 +0.3 1,550,859 - mrcA MCAODC_07610 0.89 -1.0 1,550,884 - +0.2 1,550,923 - -1.2 1,550,931 + -0.1 1,550,932 - -1.8 1,550,948 + +1.5 1,550,978 + -1.3 1,551,013 + +2.0 1,551,013 + -0.7 1,551,014 - +0.0 1,551,014 - -0.1 1,551,047 + -0.4 1,551,048 - -0.5 1,551,048 - +0.6 1,551,054 - +0.0 1,551,055 + +3.2 1,551,055 + -0.3 1,551,056 - -1.9 1,551,056 - +0.9 1,551,119 - +0.4 1,551,119 - -0.3 1,551,166 + -0.2 1,551,184 + +1.7 1,551,184 + -0.2 1,551,184 + +0.5 1,551,185 - -0.0 1,551,185 - +0.5 1,551,185 - -3.4 1,551,186 + -0.1 1,551,186 + +0.0 1,551,186 + -0.3 1,551,186 + -0.4 1,551,187 - +1.4 1,551,209 + +0.2 1,551,209 + +0.5 1,551,209 + +1.5 1,551,209 + +1.4 1,551,209 + +0.0 1,551,210 - -0.8 1,551,210 - +0.1 1,551,210 - -2.0 1,551,210 - -1.2 1,551,210 - +0.7 1,551,210 - +2.4 1,551,210 - +0.5 1,551,211 + -0.1 1,551,212 - -1.9 1,551,233 + +0.5 1,551,258 - -0.6 1,551,283 + +0.3 1,551,283 + +1.8 1,551,283 + -1.2 1,551,283 + -1.9 1,551,283 + -2.7 1,551,284 - -0.6 1,551,284 - -0.6 1,551,284 - +0.6 1,551,416 + hofM MCAODC_07615 0.21 +0.6 1,551,416 + hofM MCAODC_07615 0.21 +0.6 1,551,417 - hofM MCAODC_07615 0.21 +0.6 1,551,417 - hofM MCAODC_07615 0.21 -0.4 1,551,428 - hofM MCAODC_07615 0.23 +0.1 1,551,493 + hofM MCAODC_07615 0.31 +0.1 1,551,494 - hofM MCAODC_07615 0.31 -3.1 1,551,494 - hofM MCAODC_07615 0.31 -0.4 1,551,636 + hofM MCAODC_07615 0.49 +0.1 1,551,636 + hofM MCAODC_07615 0.49 +0.8 1,551,637 - hofM MCAODC_07615 0.49 -1.0 1,551,637 - hofM MCAODC_07615 0.49 -0.0 1,551,637 - hofM MCAODC_07615 0.49 +0.5 1,551,638 + hofM MCAODC_07615 0.49 -0.7 1,551,639 - hofM MCAODC_07615 0.49 -1.8 1,551,639 - hofM MCAODC_07615 0.49 -0.0 1,551,681 - hofM MCAODC_07615 0.54 +1.4 1,551,681 - hofM MCAODC_07615 0.54 -0.3 1,551,710 + hofM MCAODC_07615 0.58 +0.0 1,551,711 - hofM MCAODC_07615 0.58 -0.5 1,551,711 - hofM MCAODC_07615 0.58 -0.1 1,551,711 - hofM MCAODC_07615 0.58 -0.1 1,551,739 + hofM MCAODC_07615 0.62 -0.3 1,551,739 + hofM MCAODC_07615 0.62 +0.7 1,551,739 + hofM MCAODC_07615 0.62 +0.1 1,551,761 - hofM MCAODC_07615 0.64 -0.2 1,551,857 + hofM MCAODC_07615 0.76 +0.1 1,551,911 - hofM MCAODC_07615 0.83 -0.8 1,552,022 + +0.0 1,552,022 + +0.1 1,552,139 + hofN MCAODC_07620 0.21 +1.0 1,552,139 + hofN MCAODC_07620 0.21 +1.5 1,552,140 - hofN MCAODC_07620 0.21 +0.4 1,552,142 + hofN MCAODC_07620 0.21 +0.4 1,552,142 + hofN MCAODC_07620 0.21 +0.4 1,552,142 + hofN MCAODC_07620 0.21 +0.1 1,552,143 - hofN MCAODC_07620 0.21 -0.3 1,552,220 + hofN MCAODC_07620 0.36 +0.4 1,552,220 + hofN MCAODC_07620 0.36 +0.5 1,552,343 + hofN MCAODC_07620 0.59 +1.3 1,552,371 - hofN MCAODC_07620 0.64 -0.4 1,552,407 + hofN MCAODC_07620 0.70 +0.2 1,552,407 + hofN MCAODC_07620 0.70 +0.7 1,552,407 + hofN MCAODC_07620 0.70 +0.4 1,552,407 + hofN MCAODC_07620 0.70 -3.2 1,552,407 + hofN MCAODC_07620 0.70 -0.9 1,552,408 - hofN MCAODC_07620 0.71 +0.9 1,552,408 - hofN MCAODC_07620 0.71 +0.2 1,552,408 - hofN MCAODC_07620 0.71 -0.0 1,552,408 - hofN MCAODC_07620 0.71 +0.4 1,552,408 - hofN MCAODC_07620 0.71 +1.0 1,552,533 - +0.7 1,552,533 - +0.2 1,552,629 + hofO MCAODC_07625 0.18 +0.1 1,552,629 + hofO MCAODC_07625 0.18 +1.1 1,552,630 - hofO MCAODC_07625 0.18 +0.3 1,552,630 - hofO MCAODC_07625 0.18 +2.4 1,552,630 - hofO MCAODC_07625 0.18 +0.6 1,552,633 + hofO MCAODC_07625 0.19 +0.3 1,552,633 + hofO MCAODC_07625 0.19 +0.5 1,552,633 + hofO MCAODC_07625 0.19 -0.2 1,552,634 - hofO MCAODC_07625 0.19 +1.1 1,552,634 - hofO MCAODC_07625 0.19 +0.7 1,552,634 - hofO MCAODC_07625 0.19 -0.6 1,552,634 - hofO MCAODC_07625 0.19 -3.0 1,552,988 + -0.2 1,553,009 + +0.9 1,553,010 - -0.3 1,553,010 - +0.1 1,553,010 - -1.1 1,553,026 + hofP MCAODC_07630 0.11 -0.1 1,553,027 - hofP MCAODC_07630 0.12 -0.0
Or see this region's nucleotide sequence