Strain Fitness in Escherichia coli ECRC101 around MCAODC_07500

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrtcA and MCAODC_07490 are separated by 49 nucleotidesMCAODC_07490 and MCAODC_07495 overlap by 10 nucleotidesMCAODC_07495 and malT are separated by 66 nucleotidesmalT and malP are separated by 611 nucleotides MCAODC_07485: rtcA - RNA 3'-terminal phosphate cyclase, at 1,516,398 to 1,517,426 rtcA MCAODC_07490: MCAODC_07490 - GNAT family N-acetyltransferase, at 1,517,476 to 1,517,961 _07490 MCAODC_07495: MCAODC_07495 - DUF1778 domain-containing protein, at 1,517,952 to 1,518,230 _07495 MCAODC_07500: malT - HTH-type transcriptional regulator MalT, at 1,518,297 to 1,521,002 malT MCAODC_07505: malP - maltodextrin phosphorylase, at 1,521,614 to 1,524,007 malP Position (kb) 1518 1519 1520 1521 1522Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1517.370 kb on - strandat 1517.370 kb on - strandat 1517.392 kb on + strandat 1517.407 kb on + strandat 1517.472 kb on + strandat 1517.472 kb on + strandat 1517.472 kb on + strandat 1517.472 kb on + strandat 1517.473 kb on - strandat 1517.477 kb on + strandat 1517.488 kb on - strandat 1517.496 kb on - strandat 1517.500 kb on + strandat 1517.501 kb on - strandat 1517.505 kb on + strandat 1517.505 kb on + strandat 1517.505 kb on + strandat 1517.505 kb on + strandat 1517.505 kb on + strandat 1517.506 kb on - strandat 1517.527 kb on + strand, within MCAODC_07490at 1517.527 kb on + strand, within MCAODC_07490at 1517.527 kb on + strand, within MCAODC_07490at 1517.528 kb on - strand, within MCAODC_07490at 1517.528 kb on - strand, within MCAODC_07490at 1517.537 kb on + strand, within MCAODC_07490at 1517.537 kb on + strand, within MCAODC_07490at 1517.538 kb on - strand, within MCAODC_07490at 1517.546 kb on + strand, within MCAODC_07490at 1517.557 kb on + strand, within MCAODC_07490at 1517.558 kb on - strand, within MCAODC_07490at 1517.569 kb on + strand, within MCAODC_07490at 1517.611 kb on + strand, within MCAODC_07490at 1517.611 kb on + strand, within MCAODC_07490at 1517.664 kb on + strand, within MCAODC_07490at 1517.665 kb on - strand, within MCAODC_07490at 1517.701 kb on + strand, within MCAODC_07490at 1517.701 kb on + strand, within MCAODC_07490at 1517.730 kb on + strand, within MCAODC_07490at 1517.730 kb on + strand, within MCAODC_07490at 1517.730 kb on + strand, within MCAODC_07490at 1517.730 kb on + strand, within MCAODC_07490at 1517.731 kb on - strand, within MCAODC_07490at 1517.731 kb on - strand, within MCAODC_07490at 1517.731 kb on - strand, within MCAODC_07490at 1517.731 kb on - strand, within MCAODC_07490at 1517.766 kb on + strand, within MCAODC_07490at 1517.766 kb on + strand, within MCAODC_07490at 1517.767 kb on - strand, within MCAODC_07490at 1517.776 kb on - strand, within MCAODC_07490at 1517.786 kb on + strand, within MCAODC_07490at 1517.786 kb on + strand, within MCAODC_07490at 1517.786 kb on + strand, within MCAODC_07490at 1517.787 kb on - strand, within MCAODC_07490at 1517.787 kb on - strand, within MCAODC_07490at 1517.787 kb on - strand, within MCAODC_07490at 1517.790 kb on - strand, within MCAODC_07490at 1517.798 kb on - strand, within MCAODC_07490at 1517.824 kb on - strand, within MCAODC_07490at 1517.828 kb on + strand, within MCAODC_07490at 1517.922 kb on + strandat 1517.923 kb on - strandat 1517.923 kb on - strandat 1517.943 kb on + strandat 1517.943 kb on + strandat 1517.943 kb on + strandat 1517.969 kb on + strandat 1517.969 kb on + strandat 1518.046 kb on + strand, within MCAODC_07495at 1518.046 kb on + strand, within MCAODC_07495at 1518.046 kb on + strand, within MCAODC_07495at 1518.070 kb on - strand, within MCAODC_07495at 1518.070 kb on - strand, within MCAODC_07495at 1518.081 kb on + strand, within MCAODC_07495at 1518.081 kb on + strand, within MCAODC_07495at 1518.082 kb on - strand, within MCAODC_07495at 1518.082 kb on - strand, within MCAODC_07495at 1518.085 kb on - strand, within MCAODC_07495at 1518.230 kb on + strandat 1518.259 kb on + strandat 1518.259 kb on + strandat 1518.259 kb on + strandat 1518.259 kb on + strandat 1518.260 kb on - strandat 1518.260 kb on - strandat 1518.267 kb on - strandat 1518.275 kb on + strandat 1518.275 kb on + strandat 1518.275 kb on + strandat 1518.276 kb on - strandat 1518.289 kb on - strandat 1518.307 kb on + strandat 1518.435 kb on + strandat 1518.435 kb on + strandat 1518.460 kb on + strandat 1518.537 kb on + strandat 1518.606 kb on + strand, within malTat 1518.607 kb on - strand, within malTat 1518.647 kb on + strand, within malTat 1518.648 kb on - strand, within malTat 1518.713 kb on + strand, within malTat 1518.714 kb on - strand, within malTat 1518.714 kb on - strand, within malTat 1518.790 kb on + strand, within malTat 1518.791 kb on - strand, within malTat 1518.801 kb on + strand, within malTat 1518.802 kb on - strand, within malTat 1518.802 kb on - strand, within malTat 1518.971 kb on + strand, within malTat 1518.978 kb on - strand, within malTat 1518.978 kb on - strand, within malTat 1519.007 kb on + strand, within malTat 1519.007 kb on + strand, within malTat 1519.027 kb on + strand, within malTat 1519.028 kb on - strand, within malTat 1519.053 kb on - strand, within malTat 1519.129 kb on - strand, within malTat 1519.195 kb on + strand, within malTat 1519.195 kb on + strand, within malTat 1519.196 kb on - strand, within malTat 1519.419 kb on + strand, within malTat 1519.426 kb on + strand, within malTat 1519.427 kb on - strand, within malTat 1519.550 kb on - strand, within malTat 1519.550 kb on - strand, within malTat 1519.719 kb on - strand, within malTat 1519.730 kb on - strand, within malTat 1519.765 kb on - strand, within malTat 1519.812 kb on - strand, within malTat 1520.027 kb on + strand, within malTat 1520.027 kb on + strand, within malTat 1520.064 kb on - strand, within malTat 1520.242 kb on + strand, within malTat 1520.243 kb on - strand, within malTat 1520.291 kb on + strand, within malTat 1520.292 kb on - strand, within malTat 1520.306 kb on + strand, within malTat 1520.332 kb on - strand, within malTat 1520.332 kb on - strand, within malTat 1520.332 kb on - strand, within malTat 1520.332 kb on - strand, within malTat 1520.332 kb on - strand, within malTat 1520.337 kb on + strand, within malTat 1520.337 kb on + strand, within malTat 1520.338 kb on - strand, within malTat 1520.444 kb on + strand, within malTat 1520.444 kb on + strand, within malTat 1520.445 kb on - strand, within malTat 1520.445 kb on - strand, within malTat 1520.445 kb on - strand, within malTat 1520.445 kb on - strand, within malTat 1520.523 kb on - strand, within malTat 1520.523 kb on - strand, within malTat 1520.568 kb on - strand, within malTat 1520.601 kb on - strand, within malTat 1520.601 kb on - strand, within malTat 1520.601 kb on - strand, within malTat 1520.614 kb on + strand, within malTat 1520.632 kb on + strand, within malTat 1520.632 kb on + strand, within malTat 1520.698 kb on + strand, within malTat 1520.698 kb on + strand, within malTat 1520.699 kb on - strand, within malTat 1520.699 kb on - strand, within malTat 1520.699 kb on - strand, within malTat 1520.727 kb on + strand, within malTat 1520.774 kb on - strandat 1520.774 kb on - strandat 1520.871 kb on - strandat 1520.875 kb on + strandat 1520.957 kb on + strandat 1520.958 kb on - strandat 1521.002 kb on + strandat 1521.002 kb on + strandat 1521.002 kb on + strandat 1521.002 kb on + strandat 1521.007 kb on - strandat 1521.056 kb on + strandat 1521.060 kb on + strandat 1521.068 kb on - strandat 1521.068 kb on - strandat 1521.069 kb on + strandat 1521.069 kb on + strandat 1521.070 kb on - strandat 1521.070 kb on - strandat 1521.114 kb on + strandat 1521.157 kb on + strandat 1521.158 kb on - strandat 1521.207 kb on + strandat 1521.226 kb on + strandat 1521.226 kb on + strandat 1521.227 kb on - strandat 1521.264 kb on - strandat 1521.281 kb on + strandat 1521.282 kb on - strandat 1521.284 kb on + strandat 1521.285 kb on - strandat 1521.294 kb on - strandat 1521.319 kb on - strandat 1521.358 kb on - strandat 1521.360 kb on - strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.365 kb on + strandat 1521.410 kb on - strandat 1521.431 kb on + strandat 1521.431 kb on + strandat 1521.451 kb on - strandat 1521.451 kb on - strandat 1521.474 kb on + strandat 1521.475 kb on - strandat 1521.475 kb on - strandat 1521.526 kb on - strandat 1521.571 kb on - strandat 1521.613 kb on + strandat 1521.613 kb on + strandat 1521.613 kb on + strandat 1521.614 kb on - strandat 1521.614 kb on - strandat 1521.614 kb on - strandat 1521.625 kb on + strandat 1521.626 kb on - strandat 1521.799 kb on + strandat 1521.799 kb on + strandat 1521.800 kb on - strandat 1521.800 kb on - strandat 1521.800 kb on - strandat 1521.803 kb on + strandat 1521.803 kb on + strandat 1521.803 kb on + strandat 1521.803 kb on + strandat 1521.803 kb on + strandat 1521.804 kb on - strandat 1521.804 kb on - strandat 1521.804 kb on - strandat 1521.876 kb on + strand, within malPat 1521.876 kb on + strand, within malPat 1521.876 kb on + strand, within malPat 1521.876 kb on + strand, within malPat 1521.876 kb on + strand, within malPat 1521.876 kb on + strand, within malPat 1521.877 kb on - strand, within malPat 1521.877 kb on - strand, within malPat 1521.877 kb on - strand, within malPat 1521.896 kb on + strand, within malPat 1521.896 kb on + strand, within malPat 1521.896 kb on + strand, within malPat 1521.897 kb on - strand, within malPat 1521.897 kb on - strand, within malP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,517,370 - +0.0
1,517,370 - -0.6
1,517,392 + -1.4
1,517,407 + -0.1
1,517,472 + +0.2
1,517,472 + -0.3
1,517,472 + -0.0
1,517,472 + -0.5
1,517,473 - +1.0
1,517,477 + -1.7
1,517,488 - -0.0
1,517,496 - -0.6
1,517,500 + -1.0
1,517,501 - +0.5
1,517,505 + +0.3
1,517,505 + -3.3
1,517,505 + -0.6
1,517,505 + +0.1
1,517,505 + +0.6
1,517,506 - +0.8
1,517,527 + MCAODC_07490 0.10 +0.5
1,517,527 + MCAODC_07490 0.10 -3.0
1,517,527 + MCAODC_07490 0.10 +0.5
1,517,528 - MCAODC_07490 0.11 +0.1
1,517,528 - MCAODC_07490 0.11 -0.1
1,517,537 + MCAODC_07490 0.13 -0.4
1,517,537 + MCAODC_07490 0.13 +0.7
1,517,538 - MCAODC_07490 0.13 +0.9
1,517,546 + MCAODC_07490 0.14 +2.3
1,517,557 + MCAODC_07490 0.17 +1.2
1,517,558 - MCAODC_07490 0.17 -3.2
1,517,569 + MCAODC_07490 0.19 +1.9
1,517,611 + MCAODC_07490 0.28 +0.4
1,517,611 + MCAODC_07490 0.28 -0.7
1,517,664 + MCAODC_07490 0.39 -1.0
1,517,665 - MCAODC_07490 0.39 -1.3
1,517,701 + MCAODC_07490 0.46 -1.0
1,517,701 + MCAODC_07490 0.46 +0.1
1,517,730 + MCAODC_07490 0.52 +0.9
1,517,730 + MCAODC_07490 0.52 -0.1
1,517,730 + MCAODC_07490 0.52 -0.2
1,517,730 + MCAODC_07490 0.52 +2.2
1,517,731 - MCAODC_07490 0.52 -1.3
1,517,731 - MCAODC_07490 0.52 +0.0
1,517,731 - MCAODC_07490 0.52 -2.6
1,517,731 - MCAODC_07490 0.52 -0.0
1,517,766 + MCAODC_07490 0.60 -0.9
1,517,766 + MCAODC_07490 0.60 -1.4
1,517,767 - MCAODC_07490 0.60 +0.5
1,517,776 - MCAODC_07490 0.62 -0.2
1,517,786 + MCAODC_07490 0.64 +0.7
1,517,786 + MCAODC_07490 0.64 +0.9
1,517,786 + MCAODC_07490 0.64 -2.3
1,517,787 - MCAODC_07490 0.64 -3.4
1,517,787 - MCAODC_07490 0.64 +0.4
1,517,787 - MCAODC_07490 0.64 -0.3
1,517,790 - MCAODC_07490 0.65 +0.2
1,517,798 - MCAODC_07490 0.66 -0.3
1,517,824 - MCAODC_07490 0.72 +0.4
1,517,828 + MCAODC_07490 0.72 +0.9
1,517,922 + -0.3
1,517,923 - -0.8
1,517,923 - +1.7
1,517,943 + +0.2
1,517,943 + -0.1
1,517,943 + -0.1
1,517,969 + +0.7
1,517,969 + +2.4
1,518,046 + MCAODC_07495 0.34 +1.4
1,518,046 + MCAODC_07495 0.34 -1.7
1,518,046 + MCAODC_07495 0.34 -3.4
1,518,070 - MCAODC_07495 0.42 -1.5
1,518,070 - MCAODC_07495 0.42 -2.6
1,518,081 + MCAODC_07495 0.46 -0.6
1,518,081 + MCAODC_07495 0.46 +0.9
1,518,082 - MCAODC_07495 0.47 -0.0
1,518,082 - MCAODC_07495 0.47 -1.5
1,518,085 - MCAODC_07495 0.48 -0.4
1,518,230 + +0.6
1,518,259 + +1.2
1,518,259 + -0.8
1,518,259 + +0.6
1,518,259 + +2.8
1,518,260 - +0.5
1,518,260 - +1.0
1,518,267 - +0.6
1,518,275 + -2.6
1,518,275 + +1.0
1,518,275 + -1.0
1,518,276 - +0.1
1,518,289 - +0.5
1,518,307 + +0.2
1,518,435 + +0.9
1,518,435 + -2.2
1,518,460 + +0.1
1,518,537 + -1.1
1,518,606 + malT MCAODC_07500 0.11 +0.5
1,518,607 - malT MCAODC_07500 0.11 +0.9
1,518,647 + malT MCAODC_07500 0.13 +0.7
1,518,648 - malT MCAODC_07500 0.13 -0.1
1,518,713 + malT MCAODC_07500 0.15 +1.4
1,518,714 - malT MCAODC_07500 0.15 -0.7
1,518,714 - malT MCAODC_07500 0.15 -1.4
1,518,790 + malT MCAODC_07500 0.18 +1.8
1,518,791 - malT MCAODC_07500 0.18 -1.0
1,518,801 + malT MCAODC_07500 0.19 +0.4
1,518,802 - malT MCAODC_07500 0.19 -0.4
1,518,802 - malT MCAODC_07500 0.19 +1.0
1,518,971 + malT MCAODC_07500 0.25 +0.7
1,518,978 - malT MCAODC_07500 0.25 -0.7
1,518,978 - malT MCAODC_07500 0.25 -0.9
1,519,007 + malT MCAODC_07500 0.26 +0.1
1,519,007 + malT MCAODC_07500 0.26 -1.1
1,519,027 + malT MCAODC_07500 0.27 +1.1
1,519,028 - malT MCAODC_07500 0.27 -1.3
1,519,053 - malT MCAODC_07500 0.28 +0.2
1,519,129 - malT MCAODC_07500 0.31 -0.0
1,519,195 + malT MCAODC_07500 0.33 -2.5
1,519,195 + malT MCAODC_07500 0.33 +1.2
1,519,196 - malT MCAODC_07500 0.33 +0.2
1,519,419 + malT MCAODC_07500 0.41 -0.5
1,519,426 + malT MCAODC_07500 0.42 +0.8
1,519,427 - malT MCAODC_07500 0.42 +1.8
1,519,550 - malT MCAODC_07500 0.46 -0.6
1,519,550 - malT MCAODC_07500 0.46 +0.4
1,519,719 - malT MCAODC_07500 0.53 +1.4
1,519,730 - malT MCAODC_07500 0.53 +0.7
1,519,765 - malT MCAODC_07500 0.54 -2.2
1,519,812 - malT MCAODC_07500 0.56 -3.0
1,520,027 + malT MCAODC_07500 0.64 +1.2
1,520,027 + malT MCAODC_07500 0.64 -0.0
1,520,064 - malT MCAODC_07500 0.65 -1.5
1,520,242 + malT MCAODC_07500 0.72 -0.2
1,520,243 - malT MCAODC_07500 0.72 -1.1
1,520,291 + malT MCAODC_07500 0.74 -2.9
1,520,292 - malT MCAODC_07500 0.74 +1.7
1,520,306 + malT MCAODC_07500 0.74 +0.6
1,520,332 - malT MCAODC_07500 0.75 -1.6
1,520,332 - malT MCAODC_07500 0.75 +1.4
1,520,332 - malT MCAODC_07500 0.75 -0.1
1,520,332 - malT MCAODC_07500 0.75 +0.9
1,520,332 - malT MCAODC_07500 0.75 +0.8
1,520,337 + malT MCAODC_07500 0.75 +0.1
1,520,337 + malT MCAODC_07500 0.75 +0.4
1,520,338 - malT MCAODC_07500 0.75 -0.4
1,520,444 + malT MCAODC_07500 0.79 -0.4
1,520,444 + malT MCAODC_07500 0.79 +0.0
1,520,445 - malT MCAODC_07500 0.79 +0.2
1,520,445 - malT MCAODC_07500 0.79 +2.0
1,520,445 - malT MCAODC_07500 0.79 -1.4
1,520,445 - malT MCAODC_07500 0.79 +0.8
1,520,523 - malT MCAODC_07500 0.82 +1.3
1,520,523 - malT MCAODC_07500 0.82 +0.4
1,520,568 - malT MCAODC_07500 0.84 +0.0
1,520,601 - malT MCAODC_07500 0.85 +0.6
1,520,601 - malT MCAODC_07500 0.85 +0.9
1,520,601 - malT MCAODC_07500 0.85 +0.1
1,520,614 + malT MCAODC_07500 0.86 +1.2
1,520,632 + malT MCAODC_07500 0.86 -0.3
1,520,632 + malT MCAODC_07500 0.86 -0.3
1,520,698 + malT MCAODC_07500 0.89 -1.8
1,520,698 + malT MCAODC_07500 0.89 -0.1
1,520,699 - malT MCAODC_07500 0.89 +0.4
1,520,699 - malT MCAODC_07500 0.89 +0.0
1,520,699 - malT MCAODC_07500 0.89 +0.4
1,520,727 + malT MCAODC_07500 0.90 -2.8
1,520,774 - -1.1
1,520,774 - +1.0
1,520,871 - -1.1
1,520,875 + +0.1
1,520,957 + +0.0
1,520,958 - +1.8
1,521,002 + +0.2
1,521,002 + -0.4
1,521,002 + +0.8
1,521,002 + -3.2
1,521,007 - -0.7
1,521,056 + +0.0
1,521,060 + +0.5
1,521,068 - -2.2
1,521,068 - -2.0
1,521,069 + +1.0
1,521,069 + +2.0
1,521,070 - +0.1
1,521,070 - +0.5
1,521,114 + +1.6
1,521,157 + -0.8
1,521,158 - +0.4
1,521,207 + +0.2
1,521,226 + +0.7
1,521,226 + +0.4
1,521,227 - +0.7
1,521,264 - +0.1
1,521,281 + +0.7
1,521,282 - +0.8
1,521,284 + +1.4
1,521,285 - -0.4
1,521,294 - +0.3
1,521,319 - -3.5
1,521,358 - +0.1
1,521,360 - +0.4
1,521,365 + +2.0
1,521,365 + +0.0
1,521,365 + +0.4
1,521,365 + +0.0
1,521,365 + -0.7
1,521,365 + +0.2
1,521,365 + +0.2
1,521,365 + -0.1
1,521,410 - +0.5
1,521,431 + -1.6
1,521,431 + -3.6
1,521,451 - +1.0
1,521,451 - +1.0
1,521,474 + +0.2
1,521,475 - -0.6
1,521,475 - +1.1
1,521,526 - +0.4
1,521,571 - +2.1
1,521,613 + +0.6
1,521,613 + +0.6
1,521,613 + -0.1
1,521,614 - +1.1
1,521,614 - -1.4
1,521,614 - +2.0
1,521,625 + +1.0
1,521,626 - -2.5
1,521,799 + +0.4
1,521,799 + +0.1
1,521,800 - +1.3
1,521,800 - +0.1
1,521,800 - -2.2
1,521,803 + +0.8
1,521,803 + -1.5
1,521,803 + +0.0
1,521,803 + +0.4
1,521,803 + -0.5
1,521,804 - +0.1
1,521,804 - -0.6
1,521,804 - -1.1
1,521,876 + malP MCAODC_07505 0.11 -0.6
1,521,876 + malP MCAODC_07505 0.11 -0.7
1,521,876 + malP MCAODC_07505 0.11 +1.3
1,521,876 + malP MCAODC_07505 0.11 +0.6
1,521,876 + malP MCAODC_07505 0.11 +0.5
1,521,876 + malP MCAODC_07505 0.11 -1.1
1,521,877 - malP MCAODC_07505 0.11 +0.9
1,521,877 - malP MCAODC_07505 0.11 +0.5
1,521,877 - malP MCAODC_07505 0.11 +0.4
1,521,896 + malP MCAODC_07505 0.12 +0.3
1,521,896 + malP MCAODC_07505 0.12 -0.3
1,521,896 + malP MCAODC_07505 0.12 +0.9
1,521,897 - malP MCAODC_07505 0.12 +0.7
1,521,897 - malP MCAODC_07505 0.12 +0.4

Or see this region's nucleotide sequence