Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rtcA and MCAODC_07490 are separated by 49 nucleotides MCAODC_07490 and MCAODC_07495 overlap by 10 nucleotides MCAODC_07495 and malT are separated by 66 nucleotides malT and malP are separated by 611 nucleotides
MCAODC_07485: rtcA - RNA 3'-terminal phosphate cyclase, at 1,516,398 to 1,517,426
rtcA
MCAODC_07490: MCAODC_07490 - GNAT family N-acetyltransferase, at 1,517,476 to 1,517,961
_07490
MCAODC_07495: MCAODC_07495 - DUF1778 domain-containing protein, at 1,517,952 to 1,518,230
_07495
MCAODC_07500: malT - HTH-type transcriptional regulator MalT, at 1,518,297 to 1,521,002
malT
MCAODC_07505: malP - maltodextrin phosphorylase, at 1,521,614 to 1,524,007
malP
Position (kb)
1518
1519
1520
1521
1522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1517.370 kb on - strand at 1517.370 kb on - strand at 1517.392 kb on + strand at 1517.407 kb on + strand at 1517.472 kb on + strand at 1517.472 kb on + strand at 1517.472 kb on + strand at 1517.472 kb on + strand at 1517.473 kb on - strand at 1517.477 kb on + strand at 1517.488 kb on - strand at 1517.496 kb on - strand at 1517.500 kb on + strand at 1517.501 kb on - strand at 1517.505 kb on + strand at 1517.505 kb on + strand at 1517.505 kb on + strand at 1517.505 kb on + strand at 1517.505 kb on + strand at 1517.506 kb on - strand at 1517.527 kb on + strand, within MCAODC_07490 at 1517.527 kb on + strand, within MCAODC_07490 at 1517.527 kb on + strand, within MCAODC_07490 at 1517.528 kb on - strand, within MCAODC_07490 at 1517.528 kb on - strand, within MCAODC_07490 at 1517.537 kb on + strand, within MCAODC_07490 at 1517.537 kb on + strand, within MCAODC_07490 at 1517.538 kb on - strand, within MCAODC_07490 at 1517.546 kb on + strand, within MCAODC_07490 at 1517.557 kb on + strand, within MCAODC_07490 at 1517.558 kb on - strand, within MCAODC_07490 at 1517.569 kb on + strand, within MCAODC_07490 at 1517.611 kb on + strand, within MCAODC_07490 at 1517.611 kb on + strand, within MCAODC_07490 at 1517.664 kb on + strand, within MCAODC_07490 at 1517.665 kb on - strand, within MCAODC_07490 at 1517.701 kb on + strand, within MCAODC_07490 at 1517.701 kb on + strand, within MCAODC_07490 at 1517.730 kb on + strand, within MCAODC_07490 at 1517.730 kb on + strand, within MCAODC_07490 at 1517.730 kb on + strand, within MCAODC_07490 at 1517.730 kb on + strand, within MCAODC_07490 at 1517.731 kb on - strand, within MCAODC_07490 at 1517.731 kb on - strand, within MCAODC_07490 at 1517.731 kb on - strand, within MCAODC_07490 at 1517.731 kb on - strand, within MCAODC_07490 at 1517.766 kb on + strand, within MCAODC_07490 at 1517.766 kb on + strand, within MCAODC_07490 at 1517.767 kb on - strand, within MCAODC_07490 at 1517.776 kb on - strand, within MCAODC_07490 at 1517.786 kb on + strand, within MCAODC_07490 at 1517.786 kb on + strand, within MCAODC_07490 at 1517.786 kb on + strand, within MCAODC_07490 at 1517.787 kb on - strand, within MCAODC_07490 at 1517.787 kb on - strand, within MCAODC_07490 at 1517.787 kb on - strand, within MCAODC_07490 at 1517.790 kb on - strand, within MCAODC_07490 at 1517.798 kb on - strand, within MCAODC_07490 at 1517.824 kb on - strand, within MCAODC_07490 at 1517.828 kb on + strand, within MCAODC_07490 at 1517.922 kb on + strand at 1517.923 kb on - strand at 1517.923 kb on - strand at 1517.943 kb on + strand at 1517.943 kb on + strand at 1517.943 kb on + strand at 1517.969 kb on + strand at 1517.969 kb on + strand at 1518.046 kb on + strand, within MCAODC_07495 at 1518.046 kb on + strand, within MCAODC_07495 at 1518.046 kb on + strand, within MCAODC_07495 at 1518.070 kb on - strand, within MCAODC_07495 at 1518.070 kb on - strand, within MCAODC_07495 at 1518.081 kb on + strand, within MCAODC_07495 at 1518.081 kb on + strand, within MCAODC_07495 at 1518.082 kb on - strand, within MCAODC_07495 at 1518.082 kb on - strand, within MCAODC_07495 at 1518.085 kb on - strand, within MCAODC_07495 at 1518.230 kb on + strand at 1518.259 kb on + strand at 1518.259 kb on + strand at 1518.259 kb on + strand at 1518.259 kb on + strand at 1518.260 kb on - strand at 1518.260 kb on - strand at 1518.267 kb on - strand at 1518.275 kb on + strand at 1518.275 kb on + strand at 1518.275 kb on + strand at 1518.276 kb on - strand at 1518.289 kb on - strand at 1518.307 kb on + strand at 1518.435 kb on + strand at 1518.435 kb on + strand at 1518.460 kb on + strand at 1518.537 kb on + strand at 1518.606 kb on + strand, within malT at 1518.607 kb on - strand, within malT at 1518.647 kb on + strand, within malT at 1518.648 kb on - strand, within malT at 1518.713 kb on + strand, within malT at 1518.714 kb on - strand, within malT at 1518.714 kb on - strand, within malT at 1518.790 kb on + strand, within malT at 1518.791 kb on - strand, within malT at 1518.801 kb on + strand, within malT at 1518.802 kb on - strand, within malT at 1518.802 kb on - strand, within malT at 1518.971 kb on + strand, within malT at 1518.978 kb on - strand, within malT at 1518.978 kb on - strand, within malT at 1519.007 kb on + strand, within malT at 1519.007 kb on + strand, within malT at 1519.027 kb on + strand, within malT at 1519.028 kb on - strand, within malT at 1519.053 kb on - strand, within malT at 1519.129 kb on - strand, within malT at 1519.195 kb on + strand, within malT at 1519.195 kb on + strand, within malT at 1519.196 kb on - strand, within malT at 1519.419 kb on + strand, within malT at 1519.426 kb on + strand, within malT at 1519.427 kb on - strand, within malT at 1519.550 kb on - strand, within malT at 1519.550 kb on - strand, within malT at 1519.719 kb on - strand, within malT at 1519.730 kb on - strand, within malT at 1519.765 kb on - strand, within malT at 1519.812 kb on - strand, within malT at 1520.027 kb on + strand, within malT at 1520.027 kb on + strand, within malT at 1520.064 kb on - strand, within malT at 1520.242 kb on + strand, within malT at 1520.243 kb on - strand, within malT at 1520.291 kb on + strand, within malT at 1520.292 kb on - strand, within malT at 1520.306 kb on + strand, within malT at 1520.332 kb on - strand, within malT at 1520.332 kb on - strand, within malT at 1520.332 kb on - strand, within malT at 1520.332 kb on - strand, within malT at 1520.332 kb on - strand, within malT at 1520.337 kb on + strand, within malT at 1520.337 kb on + strand, within malT at 1520.338 kb on - strand, within malT at 1520.444 kb on + strand, within malT at 1520.444 kb on + strand, within malT at 1520.445 kb on - strand, within malT at 1520.445 kb on - strand, within malT at 1520.445 kb on - strand, within malT at 1520.445 kb on - strand, within malT at 1520.523 kb on - strand, within malT at 1520.523 kb on - strand, within malT at 1520.568 kb on - strand, within malT at 1520.601 kb on - strand, within malT at 1520.601 kb on - strand, within malT at 1520.601 kb on - strand, within malT at 1520.614 kb on + strand, within malT at 1520.632 kb on + strand, within malT at 1520.632 kb on + strand, within malT at 1520.698 kb on + strand, within malT at 1520.698 kb on + strand, within malT at 1520.699 kb on - strand, within malT at 1520.699 kb on - strand, within malT at 1520.699 kb on - strand, within malT at 1520.727 kb on + strand, within malT at 1520.774 kb on - strand at 1520.774 kb on - strand at 1520.871 kb on - strand at 1520.875 kb on + strand at 1520.957 kb on + strand at 1520.958 kb on - strand at 1521.002 kb on + strand at 1521.002 kb on + strand at 1521.002 kb on + strand at 1521.002 kb on + strand at 1521.007 kb on - strand at 1521.056 kb on + strand at 1521.060 kb on + strand at 1521.068 kb on - strand at 1521.068 kb on - strand at 1521.069 kb on + strand at 1521.069 kb on + strand at 1521.070 kb on - strand at 1521.070 kb on - strand at 1521.114 kb on + strand at 1521.157 kb on + strand at 1521.158 kb on - strand at 1521.207 kb on + strand at 1521.226 kb on + strand at 1521.226 kb on + strand at 1521.227 kb on - strand at 1521.264 kb on - strand at 1521.281 kb on + strand at 1521.282 kb on - strand at 1521.284 kb on + strand at 1521.285 kb on - strand at 1521.294 kb on - strand at 1521.319 kb on - strand at 1521.358 kb on - strand at 1521.360 kb on - strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.365 kb on + strand at 1521.410 kb on - strand at 1521.431 kb on + strand at 1521.431 kb on + strand at 1521.451 kb on - strand at 1521.451 kb on - strand at 1521.474 kb on + strand at 1521.475 kb on - strand at 1521.475 kb on - strand at 1521.526 kb on - strand at 1521.571 kb on - strand at 1521.613 kb on + strand at 1521.613 kb on + strand at 1521.613 kb on + strand at 1521.614 kb on - strand at 1521.614 kb on - strand at 1521.614 kb on - strand at 1521.625 kb on + strand at 1521.626 kb on - strand at 1521.799 kb on + strand at 1521.799 kb on + strand at 1521.800 kb on - strand at 1521.800 kb on - strand at 1521.800 kb on - strand at 1521.803 kb on + strand at 1521.803 kb on + strand at 1521.803 kb on + strand at 1521.803 kb on + strand at 1521.803 kb on + strand at 1521.804 kb on - strand at 1521.804 kb on - strand at 1521.804 kb on - strand at 1521.876 kb on + strand, within malP at 1521.876 kb on + strand, within malP at 1521.876 kb on + strand, within malP at 1521.876 kb on + strand, within malP at 1521.876 kb on + strand, within malP at 1521.876 kb on + strand, within malP at 1521.877 kb on - strand, within malP at 1521.877 kb on - strand, within malP at 1521.877 kb on - strand, within malP at 1521.896 kb on + strand, within malP at 1521.896 kb on + strand, within malP at 1521.896 kb on + strand, within malP at 1521.897 kb on - strand, within malP at 1521.897 kb on - strand, within malP
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,517,370 - +0.0 1,517,370 - -0.6 1,517,392 + -1.4 1,517,407 + -0.1 1,517,472 + +0.2 1,517,472 + -0.3 1,517,472 + -0.0 1,517,472 + -0.5 1,517,473 - +1.0 1,517,477 + -1.7 1,517,488 - -0.0 1,517,496 - -0.6 1,517,500 + -1.0 1,517,501 - +0.5 1,517,505 + +0.3 1,517,505 + -3.3 1,517,505 + -0.6 1,517,505 + +0.1 1,517,505 + +0.6 1,517,506 - +0.8 1,517,527 + MCAODC_07490 0.10 +0.5 1,517,527 + MCAODC_07490 0.10 -3.0 1,517,527 + MCAODC_07490 0.10 +0.5 1,517,528 - MCAODC_07490 0.11 +0.1 1,517,528 - MCAODC_07490 0.11 -0.1 1,517,537 + MCAODC_07490 0.13 -0.4 1,517,537 + MCAODC_07490 0.13 +0.7 1,517,538 - MCAODC_07490 0.13 +0.9 1,517,546 + MCAODC_07490 0.14 +2.3 1,517,557 + MCAODC_07490 0.17 +1.2 1,517,558 - MCAODC_07490 0.17 -3.2 1,517,569 + MCAODC_07490 0.19 +1.9 1,517,611 + MCAODC_07490 0.28 +0.4 1,517,611 + MCAODC_07490 0.28 -0.7 1,517,664 + MCAODC_07490 0.39 -1.0 1,517,665 - MCAODC_07490 0.39 -1.3 1,517,701 + MCAODC_07490 0.46 -1.0 1,517,701 + MCAODC_07490 0.46 +0.1 1,517,730 + MCAODC_07490 0.52 +0.9 1,517,730 + MCAODC_07490 0.52 -0.1 1,517,730 + MCAODC_07490 0.52 -0.2 1,517,730 + MCAODC_07490 0.52 +2.2 1,517,731 - MCAODC_07490 0.52 -1.3 1,517,731 - MCAODC_07490 0.52 +0.0 1,517,731 - MCAODC_07490 0.52 -2.6 1,517,731 - MCAODC_07490 0.52 -0.0 1,517,766 + MCAODC_07490 0.60 -0.9 1,517,766 + MCAODC_07490 0.60 -1.4 1,517,767 - MCAODC_07490 0.60 +0.5 1,517,776 - MCAODC_07490 0.62 -0.2 1,517,786 + MCAODC_07490 0.64 +0.7 1,517,786 + MCAODC_07490 0.64 +0.9 1,517,786 + MCAODC_07490 0.64 -2.3 1,517,787 - MCAODC_07490 0.64 -3.4 1,517,787 - MCAODC_07490 0.64 +0.4 1,517,787 - MCAODC_07490 0.64 -0.3 1,517,790 - MCAODC_07490 0.65 +0.2 1,517,798 - MCAODC_07490 0.66 -0.3 1,517,824 - MCAODC_07490 0.72 +0.4 1,517,828 + MCAODC_07490 0.72 +0.9 1,517,922 + -0.3 1,517,923 - -0.8 1,517,923 - +1.7 1,517,943 + +0.2 1,517,943 + -0.1 1,517,943 + -0.1 1,517,969 + +0.7 1,517,969 + +2.4 1,518,046 + MCAODC_07495 0.34 +1.4 1,518,046 + MCAODC_07495 0.34 -1.7 1,518,046 + MCAODC_07495 0.34 -3.4 1,518,070 - MCAODC_07495 0.42 -1.5 1,518,070 - MCAODC_07495 0.42 -2.6 1,518,081 + MCAODC_07495 0.46 -0.6 1,518,081 + MCAODC_07495 0.46 +0.9 1,518,082 - MCAODC_07495 0.47 -0.0 1,518,082 - MCAODC_07495 0.47 -1.5 1,518,085 - MCAODC_07495 0.48 -0.4 1,518,230 + +0.6 1,518,259 + +1.2 1,518,259 + -0.8 1,518,259 + +0.6 1,518,259 + +2.8 1,518,260 - +0.5 1,518,260 - +1.0 1,518,267 - +0.6 1,518,275 + -2.6 1,518,275 + +1.0 1,518,275 + -1.0 1,518,276 - +0.1 1,518,289 - +0.5 1,518,307 + +0.2 1,518,435 + +0.9 1,518,435 + -2.2 1,518,460 + +0.1 1,518,537 + -1.1 1,518,606 + malT MCAODC_07500 0.11 +0.5 1,518,607 - malT MCAODC_07500 0.11 +0.9 1,518,647 + malT MCAODC_07500 0.13 +0.7 1,518,648 - malT MCAODC_07500 0.13 -0.1 1,518,713 + malT MCAODC_07500 0.15 +1.4 1,518,714 - malT MCAODC_07500 0.15 -0.7 1,518,714 - malT MCAODC_07500 0.15 -1.4 1,518,790 + malT MCAODC_07500 0.18 +1.8 1,518,791 - malT MCAODC_07500 0.18 -1.0 1,518,801 + malT MCAODC_07500 0.19 +0.4 1,518,802 - malT MCAODC_07500 0.19 -0.4 1,518,802 - malT MCAODC_07500 0.19 +1.0 1,518,971 + malT MCAODC_07500 0.25 +0.7 1,518,978 - malT MCAODC_07500 0.25 -0.7 1,518,978 - malT MCAODC_07500 0.25 -0.9 1,519,007 + malT MCAODC_07500 0.26 +0.1 1,519,007 + malT MCAODC_07500 0.26 -1.1 1,519,027 + malT MCAODC_07500 0.27 +1.1 1,519,028 - malT MCAODC_07500 0.27 -1.3 1,519,053 - malT MCAODC_07500 0.28 +0.2 1,519,129 - malT MCAODC_07500 0.31 -0.0 1,519,195 + malT MCAODC_07500 0.33 -2.5 1,519,195 + malT MCAODC_07500 0.33 +1.2 1,519,196 - malT MCAODC_07500 0.33 +0.2 1,519,419 + malT MCAODC_07500 0.41 -0.5 1,519,426 + malT MCAODC_07500 0.42 +0.8 1,519,427 - malT MCAODC_07500 0.42 +1.8 1,519,550 - malT MCAODC_07500 0.46 -0.6 1,519,550 - malT MCAODC_07500 0.46 +0.4 1,519,719 - malT MCAODC_07500 0.53 +1.4 1,519,730 - malT MCAODC_07500 0.53 +0.7 1,519,765 - malT MCAODC_07500 0.54 -2.2 1,519,812 - malT MCAODC_07500 0.56 -3.0 1,520,027 + malT MCAODC_07500 0.64 +1.2 1,520,027 + malT MCAODC_07500 0.64 -0.0 1,520,064 - malT MCAODC_07500 0.65 -1.5 1,520,242 + malT MCAODC_07500 0.72 -0.2 1,520,243 - malT MCAODC_07500 0.72 -1.1 1,520,291 + malT MCAODC_07500 0.74 -2.9 1,520,292 - malT MCAODC_07500 0.74 +1.7 1,520,306 + malT MCAODC_07500 0.74 +0.6 1,520,332 - malT MCAODC_07500 0.75 -1.6 1,520,332 - malT MCAODC_07500 0.75 +1.4 1,520,332 - malT MCAODC_07500 0.75 -0.1 1,520,332 - malT MCAODC_07500 0.75 +0.9 1,520,332 - malT MCAODC_07500 0.75 +0.8 1,520,337 + malT MCAODC_07500 0.75 +0.1 1,520,337 + malT MCAODC_07500 0.75 +0.4 1,520,338 - malT MCAODC_07500 0.75 -0.4 1,520,444 + malT MCAODC_07500 0.79 -0.4 1,520,444 + malT MCAODC_07500 0.79 +0.0 1,520,445 - malT MCAODC_07500 0.79 +0.2 1,520,445 - malT MCAODC_07500 0.79 +2.0 1,520,445 - malT MCAODC_07500 0.79 -1.4 1,520,445 - malT MCAODC_07500 0.79 +0.8 1,520,523 - malT MCAODC_07500 0.82 +1.3 1,520,523 - malT MCAODC_07500 0.82 +0.4 1,520,568 - malT MCAODC_07500 0.84 +0.0 1,520,601 - malT MCAODC_07500 0.85 +0.6 1,520,601 - malT MCAODC_07500 0.85 +0.9 1,520,601 - malT MCAODC_07500 0.85 +0.1 1,520,614 + malT MCAODC_07500 0.86 +1.2 1,520,632 + malT MCAODC_07500 0.86 -0.3 1,520,632 + malT MCAODC_07500 0.86 -0.3 1,520,698 + malT MCAODC_07500 0.89 -1.8 1,520,698 + malT MCAODC_07500 0.89 -0.1 1,520,699 - malT MCAODC_07500 0.89 +0.4 1,520,699 - malT MCAODC_07500 0.89 +0.0 1,520,699 - malT MCAODC_07500 0.89 +0.4 1,520,727 + malT MCAODC_07500 0.90 -2.8 1,520,774 - -1.1 1,520,774 - +1.0 1,520,871 - -1.1 1,520,875 + +0.1 1,520,957 + +0.0 1,520,958 - +1.8 1,521,002 + +0.2 1,521,002 + -0.4 1,521,002 + +0.8 1,521,002 + -3.2 1,521,007 - -0.7 1,521,056 + +0.0 1,521,060 + +0.5 1,521,068 - -2.2 1,521,068 - -2.0 1,521,069 + +1.0 1,521,069 + +2.0 1,521,070 - +0.1 1,521,070 - +0.5 1,521,114 + +1.6 1,521,157 + -0.8 1,521,158 - +0.4 1,521,207 + +0.2 1,521,226 + +0.7 1,521,226 + +0.4 1,521,227 - +0.7 1,521,264 - +0.1 1,521,281 + +0.7 1,521,282 - +0.8 1,521,284 + +1.4 1,521,285 - -0.4 1,521,294 - +0.3 1,521,319 - -3.5 1,521,358 - +0.1 1,521,360 - +0.4 1,521,365 + +2.0 1,521,365 + +0.0 1,521,365 + +0.4 1,521,365 + +0.0 1,521,365 + -0.7 1,521,365 + +0.2 1,521,365 + +0.2 1,521,365 + -0.1 1,521,410 - +0.5 1,521,431 + -1.6 1,521,431 + -3.6 1,521,451 - +1.0 1,521,451 - +1.0 1,521,474 + +0.2 1,521,475 - -0.6 1,521,475 - +1.1 1,521,526 - +0.4 1,521,571 - +2.1 1,521,613 + +0.6 1,521,613 + +0.6 1,521,613 + -0.1 1,521,614 - +1.1 1,521,614 - -1.4 1,521,614 - +2.0 1,521,625 + +1.0 1,521,626 - -2.5 1,521,799 + +0.4 1,521,799 + +0.1 1,521,800 - +1.3 1,521,800 - +0.1 1,521,800 - -2.2 1,521,803 + +0.8 1,521,803 + -1.5 1,521,803 + +0.0 1,521,803 + +0.4 1,521,803 + -0.5 1,521,804 - +0.1 1,521,804 - -0.6 1,521,804 - -1.1 1,521,876 + malP MCAODC_07505 0.11 -0.6 1,521,876 + malP MCAODC_07505 0.11 -0.7 1,521,876 + malP MCAODC_07505 0.11 +1.3 1,521,876 + malP MCAODC_07505 0.11 +0.6 1,521,876 + malP MCAODC_07505 0.11 +0.5 1,521,876 + malP MCAODC_07505 0.11 -1.1 1,521,877 - malP MCAODC_07505 0.11 +0.9 1,521,877 - malP MCAODC_07505 0.11 +0.5 1,521,877 - malP MCAODC_07505 0.11 +0.4 1,521,896 + malP MCAODC_07505 0.12 +0.3 1,521,896 + malP MCAODC_07505 0.12 -0.3 1,521,896 + malP MCAODC_07505 0.12 +0.9 1,521,897 - malP MCAODC_07505 0.12 +0.7 1,521,897 - malP MCAODC_07505 0.12 +0.4
Or see this region's nucleotide sequence