Strain Fitness in Escherichia coli ECRC101 around MCAODC_07165

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntacpP and MCAODC_07155 overlap by 26 nucleotidesMCAODC_07155 and MCAODC_07160 are separated by 21 nucleotidesMCAODC_07160 and MCAODC_07165 overlap by 22 nucleotidesMCAODC_07165 and MCAODC_07170 are separated by 40 nucleotides MCAODC_07150: acpP - acyl carrier protein, at 1,450,325 to 1,450,582 acpP MCAODC_07155: MCAODC_07155 - PlsC domain-containing protein, at 1,450,557 to 1,451,225 _07155 MCAODC_07160: MCAODC_07160 - hypothetical protein, at 1,451,247 to 1,451,396 _07160 MCAODC_07165: MCAODC_07165 - beta-ketoacyl synthase, at 1,451,375 to 1,452,097 _07165 MCAODC_07170: MCAODC_07170 - SAM-dependent methyltransferase, at 1,452,138 to 1,453,196 _07170 Position (kb) 1451 1452 1453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1450.508 kb on - strand, within acpPat 1450.569 kb on + strandat 1450.583 kb on + strandat 1450.584 kb on - strandat 1450.602 kb on + strandat 1450.602 kb on + strandat 1450.603 kb on - strandat 1450.603 kb on - strandat 1450.617 kb on + strandat 1450.617 kb on + strandat 1450.618 kb on - strandat 1450.618 kb on - strandat 1450.618 kb on - strandat 1450.684 kb on + strand, within MCAODC_07155at 1450.692 kb on - strand, within MCAODC_07155at 1450.724 kb on + strand, within MCAODC_07155at 1450.754 kb on - strand, within MCAODC_07155at 1450.760 kb on + strand, within MCAODC_07155at 1450.760 kb on + strand, within MCAODC_07155at 1450.761 kb on - strand, within MCAODC_07155at 1450.761 kb on - strand, within MCAODC_07155at 1450.810 kb on - strand, within MCAODC_07155at 1450.907 kb on + strand, within MCAODC_07155at 1450.907 kb on + strand, within MCAODC_07155at 1450.971 kb on + strand, within MCAODC_07155at 1450.975 kb on + strand, within MCAODC_07155at 1450.975 kb on + strand, within MCAODC_07155at 1451.075 kb on - strand, within MCAODC_07155at 1451.127 kb on + strand, within MCAODC_07155at 1451.128 kb on - strand, within MCAODC_07155at 1451.128 kb on - strand, within MCAODC_07155at 1451.153 kb on - strand, within MCAODC_07155at 1451.184 kb on + strandat 1451.265 kb on + strand, within MCAODC_07160at 1451.265 kb on + strand, within MCAODC_07160at 1451.265 kb on + strand, within MCAODC_07160at 1451.266 kb on - strand, within MCAODC_07160at 1451.266 kb on - strand, within MCAODC_07160at 1451.266 kb on - strand, within MCAODC_07160at 1451.323 kb on - strand, within MCAODC_07160at 1451.372 kb on + strand, within MCAODC_07160at 1451.373 kb on - strand, within MCAODC_07160at 1451.652 kb on - strand, within MCAODC_07165at 1451.768 kb on + strand, within MCAODC_07165at 1451.863 kb on + strand, within MCAODC_07165at 1451.864 kb on - strand, within MCAODC_07165at 1451.865 kb on + strand, within MCAODC_07165at 1451.866 kb on - strand, within MCAODC_07165at 1451.866 kb on - strand, within MCAODC_07165at 1451.866 kb on - strand, within MCAODC_07165at 1451.894 kb on + strand, within MCAODC_07165at 1452.046 kb on + strandat 1452.047 kb on - strandat 1452.084 kb on - strandat 1452.126 kb on - strandat 1452.128 kb on + strandat 1452.129 kb on - strandat 1452.139 kb on + strandat 1452.140 kb on - strandat 1452.140 kb on - strandat 1452.182 kb on + strandat 1452.182 kb on + strandat 1452.182 kb on + strandat 1452.199 kb on - strandat 1452.216 kb on - strandat 1452.245 kb on + strand, within MCAODC_07170at 1452.245 kb on + strand, within MCAODC_07170at 1452.246 kb on - strand, within MCAODC_07170at 1452.247 kb on + strand, within MCAODC_07170at 1452.247 kb on + strand, within MCAODC_07170at 1452.248 kb on - strand, within MCAODC_07170at 1452.248 kb on - strand, within MCAODC_07170at 1452.248 kb on - strand, within MCAODC_07170at 1452.278 kb on + strand, within MCAODC_07170at 1452.283 kb on + strand, within MCAODC_07170at 1452.379 kb on - strand, within MCAODC_07170at 1452.399 kb on + strand, within MCAODC_07170at 1452.400 kb on - strand, within MCAODC_07170at 1452.404 kb on + strand, within MCAODC_07170at 1452.404 kb on + strand, within MCAODC_07170at 1452.405 kb on - strand, within MCAODC_07170at 1452.405 kb on - strand, within MCAODC_07170at 1452.405 kb on - strand, within MCAODC_07170at 1452.408 kb on + strand, within MCAODC_07170at 1452.409 kb on - strand, within MCAODC_07170at 1452.433 kb on - strand, within MCAODC_07170at 1452.455 kb on + strand, within MCAODC_07170at 1452.486 kb on + strand, within MCAODC_07170at 1452.487 kb on - strand, within MCAODC_07170at 1452.487 kb on - strand, within MCAODC_07170at 1452.491 kb on + strand, within MCAODC_07170at 1452.510 kb on + strand, within MCAODC_07170at 1452.510 kb on + strand, within MCAODC_07170at 1452.511 kb on - strand, within MCAODC_07170at 1452.539 kb on + strand, within MCAODC_07170at 1452.552 kb on + strand, within MCAODC_07170at 1452.553 kb on - strand, within MCAODC_07170at 1452.555 kb on + strand, within MCAODC_07170at 1452.576 kb on + strand, within MCAODC_07170at 1452.577 kb on - strand, within MCAODC_07170at 1452.577 kb on - strand, within MCAODC_07170at 1452.577 kb on - strand, within MCAODC_07170at 1452.579 kb on + strand, within MCAODC_07170at 1452.579 kb on + strand, within MCAODC_07170at 1452.604 kb on + strand, within MCAODC_07170at 1452.604 kb on + strand, within MCAODC_07170at 1452.605 kb on - strand, within MCAODC_07170at 1452.629 kb on + strand, within MCAODC_07170at 1452.630 kb on - strand, within MCAODC_07170at 1452.652 kb on + strand, within MCAODC_07170at 1452.652 kb on + strand, within MCAODC_07170at 1452.653 kb on - strand, within MCAODC_07170at 1452.653 kb on - strand, within MCAODC_07170at 1452.653 kb on - strand, within MCAODC_07170at 1452.678 kb on + strand, within MCAODC_07170at 1452.678 kb on + strand, within MCAODC_07170at 1452.678 kb on + strand, within MCAODC_07170at 1452.679 kb on - strand, within MCAODC_07170at 1452.679 kb on - strand, within MCAODC_07170at 1452.682 kb on + strand, within MCAODC_07170at 1452.682 kb on + strand, within MCAODC_07170at 1452.682 kb on + strand, within MCAODC_07170at 1452.699 kb on - strand, within MCAODC_07170at 1452.715 kb on + strand, within MCAODC_07170at 1452.716 kb on - strand, within MCAODC_07170at 1452.719 kb on - strand, within MCAODC_07170at 1452.719 kb on - strand, within MCAODC_07170at 1452.760 kb on - strand, within MCAODC_07170at 1452.778 kb on + strand, within MCAODC_07170at 1452.778 kb on + strand, within MCAODC_07170at 1452.779 kb on - strand, within MCAODC_07170at 1452.779 kb on - strand, within MCAODC_07170at 1452.779 kb on - strand, within MCAODC_07170at 1452.780 kb on + strand, within MCAODC_07170at 1452.781 kb on - strand, within MCAODC_07170at 1452.781 kb on - strand, within MCAODC_07170at 1452.801 kb on + strand, within MCAODC_07170at 1452.802 kb on - strand, within MCAODC_07170at 1452.802 kb on - strand, within MCAODC_07170at 1452.850 kb on - strand, within MCAODC_07170at 1452.902 kb on + strand, within MCAODC_07170at 1452.903 kb on - strand, within MCAODC_07170at 1452.903 kb on - strand, within MCAODC_07170at 1452.920 kb on - strand, within MCAODC_07170at 1452.940 kb on + strand, within MCAODC_07170at 1452.943 kb on + strand, within MCAODC_07170at 1452.944 kb on - strand, within MCAODC_07170at 1452.956 kb on + strand, within MCAODC_07170at 1452.957 kb on - strand, within MCAODC_07170at 1452.962 kb on + strand, within MCAODC_07170at 1452.962 kb on + strand, within MCAODC_07170at 1452.962 kb on + strand, within MCAODC_07170at 1452.966 kb on - strand, within MCAODC_07170at 1452.987 kb on - strand, within MCAODC_07170at 1452.987 kb on - strand, within MCAODC_07170at 1452.990 kb on + strand, within MCAODC_07170at 1452.990 kb on + strand, within MCAODC_07170at 1452.991 kb on - strand, within MCAODC_07170at 1453.005 kb on - strand, within MCAODC_07170at 1453.009 kb on + strand, within MCAODC_07170at 1453.010 kb on - strand, within MCAODC_07170at 1453.019 kb on + strand, within MCAODC_07170at 1453.019 kb on + strand, within MCAODC_07170at 1453.020 kb on - strand, within MCAODC_07170at 1453.020 kb on - strand, within MCAODC_07170at 1453.020 kb on - strand, within MCAODC_07170at 1453.026 kb on - strand, within MCAODC_07170at 1453.038 kb on - strand, within MCAODC_07170at 1453.038 kb on - strand, within MCAODC_07170at 1453.086 kb on + strand, within MCAODC_07170at 1453.086 kb on + strand, within MCAODC_07170at 1453.087 kb on - strand, within MCAODC_07170at 1453.087 kb on - strand, within MCAODC_07170at 1453.087 kb on - strand, within MCAODC_07170at 1453.097 kb on + strandat 1453.097 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
1,450,508 - acpP MCAODC_07150 0.71 +0.9
1,450,569 + +0.7
1,450,583 + +0.9
1,450,584 - -0.1
1,450,602 + -1.3
1,450,602 + +1.1
1,450,603 - +1.3
1,450,603 - +1.5
1,450,617 + +0.1
1,450,617 + -1.1
1,450,618 - -2.9
1,450,618 - +0.2
1,450,618 - -1.6
1,450,684 + MCAODC_07155 0.19 -1.2
1,450,692 - MCAODC_07155 0.20 -0.4
1,450,724 + MCAODC_07155 0.25 +0.1
1,450,754 - MCAODC_07155 0.29 +0.2
1,450,760 + MCAODC_07155 0.30 -0.2
1,450,760 + MCAODC_07155 0.30 +0.4
1,450,761 - MCAODC_07155 0.30 +0.1
1,450,761 - MCAODC_07155 0.30 +1.7
1,450,810 - MCAODC_07155 0.38 -0.3
1,450,907 + MCAODC_07155 0.52 +0.8
1,450,907 + MCAODC_07155 0.52 -1.3
1,450,971 + MCAODC_07155 0.62 +0.9
1,450,975 + MCAODC_07155 0.62 +0.3
1,450,975 + MCAODC_07155 0.62 -1.9
1,451,075 - MCAODC_07155 0.77 -3.0
1,451,127 + MCAODC_07155 0.85 -1.2
1,451,128 - MCAODC_07155 0.85 +0.7
1,451,128 - MCAODC_07155 0.85 +0.7
1,451,153 - MCAODC_07155 0.89 -1.8
1,451,184 + +0.0
1,451,265 + MCAODC_07160 0.12 +0.6
1,451,265 + MCAODC_07160 0.12 +0.4
1,451,265 + MCAODC_07160 0.12 +0.2
1,451,266 - MCAODC_07160 0.13 -1.0
1,451,266 - MCAODC_07160 0.13 +1.0
1,451,266 - MCAODC_07160 0.13 -2.0
1,451,323 - MCAODC_07160 0.51 -1.0
1,451,372 + MCAODC_07160 0.83 -0.1
1,451,373 - MCAODC_07160 0.84 +1.0
1,451,652 - MCAODC_07165 0.38 +0.1
1,451,768 + MCAODC_07165 0.54 -0.0
1,451,863 + MCAODC_07165 0.67 -0.0
1,451,864 - MCAODC_07165 0.68 +0.3
1,451,865 + MCAODC_07165 0.68 +0.7
1,451,866 - MCAODC_07165 0.68 +0.2
1,451,866 - MCAODC_07165 0.68 +0.3
1,451,866 - MCAODC_07165 0.68 -3.9
1,451,894 + MCAODC_07165 0.72 -1.3
1,452,046 + -0.9
1,452,047 - +0.4
1,452,084 - +1.7
1,452,126 - +0.4
1,452,128 + +0.1
1,452,129 - +0.2
1,452,139 + +1.0
1,452,140 - +1.6
1,452,140 - -0.1
1,452,182 + -0.6
1,452,182 + +1.3
1,452,182 + -0.2
1,452,199 - +1.1
1,452,216 - -2.0
1,452,245 + MCAODC_07170 0.10 +0.9
1,452,245 + MCAODC_07170 0.10 +0.2
1,452,246 - MCAODC_07170 0.10 +0.4
1,452,247 + MCAODC_07170 0.10 -2.8
1,452,247 + MCAODC_07170 0.10 +0.6
1,452,248 - MCAODC_07170 0.10 -0.9
1,452,248 - MCAODC_07170 0.10 -0.5
1,452,248 - MCAODC_07170 0.10 +0.6
1,452,278 + MCAODC_07170 0.13 -0.4
1,452,283 + MCAODC_07170 0.14 +0.7
1,452,379 - MCAODC_07170 0.23 -0.1
1,452,399 + MCAODC_07170 0.25 -0.3
1,452,400 - MCAODC_07170 0.25 +0.6
1,452,404 + MCAODC_07170 0.25 +0.8
1,452,404 + MCAODC_07170 0.25 -0.2
1,452,405 - MCAODC_07170 0.25 -1.7
1,452,405 - MCAODC_07170 0.25 -0.1
1,452,405 - MCAODC_07170 0.25 +0.4
1,452,408 + MCAODC_07170 0.25 -0.0
1,452,409 - MCAODC_07170 0.26 -2.2
1,452,433 - MCAODC_07170 0.28 +0.6
1,452,455 + MCAODC_07170 0.30 +0.3
1,452,486 + MCAODC_07170 0.33 +0.5
1,452,487 - MCAODC_07170 0.33 -0.3
1,452,487 - MCAODC_07170 0.33 -0.4
1,452,491 + MCAODC_07170 0.33 -0.5
1,452,510 + MCAODC_07170 0.35 +1.4
1,452,510 + MCAODC_07170 0.35 +0.8
1,452,511 - MCAODC_07170 0.35 +0.3
1,452,539 + MCAODC_07170 0.38 +0.1
1,452,552 + MCAODC_07170 0.39 -0.1
1,452,553 - MCAODC_07170 0.39 +2.4
1,452,555 + MCAODC_07170 0.39 +1.1
1,452,576 + MCAODC_07170 0.41 -2.1
1,452,577 - MCAODC_07170 0.41 -2.5
1,452,577 - MCAODC_07170 0.41 +0.7
1,452,577 - MCAODC_07170 0.41 +0.4
1,452,579 + MCAODC_07170 0.42 +0.8
1,452,579 + MCAODC_07170 0.42 +0.0
1,452,604 + MCAODC_07170 0.44 +0.5
1,452,604 + MCAODC_07170 0.44 -2.1
1,452,605 - MCAODC_07170 0.44 +0.3
1,452,629 + MCAODC_07170 0.46 +0.7
1,452,630 - MCAODC_07170 0.46 -0.4
1,452,652 + MCAODC_07170 0.49 +0.6
1,452,652 + MCAODC_07170 0.49 +1.6
1,452,653 - MCAODC_07170 0.49 -1.1
1,452,653 - MCAODC_07170 0.49 +0.8
1,452,653 - MCAODC_07170 0.49 -0.7
1,452,678 + MCAODC_07170 0.51 +0.7
1,452,678 + MCAODC_07170 0.51 +1.1
1,452,678 + MCAODC_07170 0.51 +1.7
1,452,679 - MCAODC_07170 0.51 +0.4
1,452,679 - MCAODC_07170 0.51 -0.4
1,452,682 + MCAODC_07170 0.51 +3.2
1,452,682 + MCAODC_07170 0.51 +0.3
1,452,682 + MCAODC_07170 0.51 -1.1
1,452,699 - MCAODC_07170 0.53 +0.2
1,452,715 + MCAODC_07170 0.54 -0.9
1,452,716 - MCAODC_07170 0.55 +0.2
1,452,719 - MCAODC_07170 0.55 +0.7
1,452,719 - MCAODC_07170 0.55 -0.7
1,452,760 - MCAODC_07170 0.59 +0.2
1,452,778 + MCAODC_07170 0.60 +0.4
1,452,778 + MCAODC_07170 0.60 +0.6
1,452,779 - MCAODC_07170 0.61 -0.0
1,452,779 - MCAODC_07170 0.61 -1.3
1,452,779 - MCAODC_07170 0.61 -0.4
1,452,780 + MCAODC_07170 0.61 +0.8
1,452,781 - MCAODC_07170 0.61 -0.5
1,452,781 - MCAODC_07170 0.61 +1.2
1,452,801 + MCAODC_07170 0.63 +0.5
1,452,802 - MCAODC_07170 0.63 +1.4
1,452,802 - MCAODC_07170 0.63 +1.1
1,452,850 - MCAODC_07170 0.67 -0.1
1,452,902 + MCAODC_07170 0.72 +0.6
1,452,903 - MCAODC_07170 0.72 -2.7
1,452,903 - MCAODC_07170 0.72 +1.7
1,452,920 - MCAODC_07170 0.74 -2.0
1,452,940 + MCAODC_07170 0.76 +0.2
1,452,943 + MCAODC_07170 0.76 -0.5
1,452,944 - MCAODC_07170 0.76 -0.9
1,452,956 + MCAODC_07170 0.77 -2.0
1,452,957 - MCAODC_07170 0.77 +0.7
1,452,962 + MCAODC_07170 0.78 +0.3
1,452,962 + MCAODC_07170 0.78 -3.2
1,452,962 + MCAODC_07170 0.78 -1.1
1,452,966 - MCAODC_07170 0.78 +1.0
1,452,987 - MCAODC_07170 0.80 -0.0
1,452,987 - MCAODC_07170 0.80 +0.1
1,452,990 + MCAODC_07170 0.80 -0.2
1,452,990 + MCAODC_07170 0.80 +0.0
1,452,991 - MCAODC_07170 0.81 -1.2
1,453,005 - MCAODC_07170 0.82 +0.5
1,453,009 + MCAODC_07170 0.82 -3.2
1,453,010 - MCAODC_07170 0.82 -2.7
1,453,019 + MCAODC_07170 0.83 -1.6
1,453,019 + MCAODC_07170 0.83 +0.6
1,453,020 - MCAODC_07170 0.83 +0.4
1,453,020 - MCAODC_07170 0.83 +1.1
1,453,020 - MCAODC_07170 0.83 -0.2
1,453,026 - MCAODC_07170 0.84 -0.7
1,453,038 - MCAODC_07170 0.85 -0.5
1,453,038 - MCAODC_07170 0.85 +1.7
1,453,086 + MCAODC_07170 0.90 +0.8
1,453,086 + MCAODC_07170 0.90 -3.0
1,453,087 - MCAODC_07170 0.90 +0.8
1,453,087 - MCAODC_07170 0.90 +0.7
1,453,087 - MCAODC_07170 0.90 +0.9
1,453,097 + -1.0
1,453,097 + +1.4

Or see this region's nucleotide sequence