Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acpP and MCAODC_07155 overlap by 26 nucleotides MCAODC_07155 and MCAODC_07160 are separated by 21 nucleotides MCAODC_07160 and MCAODC_07165 overlap by 22 nucleotides MCAODC_07165 and MCAODC_07170 are separated by 40 nucleotides
MCAODC_07150: acpP - acyl carrier protein, at 1,450,325 to 1,450,582
acpP
MCAODC_07155: MCAODC_07155 - PlsC domain-containing protein, at 1,450,557 to 1,451,225
_07155
MCAODC_07160: MCAODC_07160 - hypothetical protein, at 1,451,247 to 1,451,396
_07160
MCAODC_07165: MCAODC_07165 - beta-ketoacyl synthase, at 1,451,375 to 1,452,097
_07165
MCAODC_07170: MCAODC_07170 - SAM-dependent methyltransferase, at 1,452,138 to 1,453,196
_07170
Position (kb)
1451
1452
1453 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1450.508 kb on - strand, within acpP at 1450.569 kb on + strand at 1450.583 kb on + strand at 1450.584 kb on - strand at 1450.602 kb on + strand at 1450.602 kb on + strand at 1450.603 kb on - strand at 1450.603 kb on - strand at 1450.617 kb on + strand at 1450.617 kb on + strand at 1450.618 kb on - strand at 1450.618 kb on - strand at 1450.618 kb on - strand at 1450.684 kb on + strand, within MCAODC_07155 at 1450.692 kb on - strand, within MCAODC_07155 at 1450.724 kb on + strand, within MCAODC_07155 at 1450.754 kb on - strand, within MCAODC_07155 at 1450.760 kb on + strand, within MCAODC_07155 at 1450.760 kb on + strand, within MCAODC_07155 at 1450.761 kb on - strand, within MCAODC_07155 at 1450.761 kb on - strand, within MCAODC_07155 at 1450.810 kb on - strand, within MCAODC_07155 at 1450.907 kb on + strand, within MCAODC_07155 at 1450.907 kb on + strand, within MCAODC_07155 at 1450.971 kb on + strand, within MCAODC_07155 at 1450.975 kb on + strand, within MCAODC_07155 at 1450.975 kb on + strand, within MCAODC_07155 at 1451.075 kb on - strand, within MCAODC_07155 at 1451.127 kb on + strand, within MCAODC_07155 at 1451.128 kb on - strand, within MCAODC_07155 at 1451.128 kb on - strand, within MCAODC_07155 at 1451.153 kb on - strand, within MCAODC_07155 at 1451.184 kb on + strand at 1451.265 kb on + strand, within MCAODC_07160 at 1451.265 kb on + strand, within MCAODC_07160 at 1451.265 kb on + strand, within MCAODC_07160 at 1451.266 kb on - strand, within MCAODC_07160 at 1451.266 kb on - strand, within MCAODC_07160 at 1451.266 kb on - strand, within MCAODC_07160 at 1451.323 kb on - strand, within MCAODC_07160 at 1451.372 kb on + strand, within MCAODC_07160 at 1451.373 kb on - strand, within MCAODC_07160 at 1451.652 kb on - strand, within MCAODC_07165 at 1451.768 kb on + strand, within MCAODC_07165 at 1451.863 kb on + strand, within MCAODC_07165 at 1451.864 kb on - strand, within MCAODC_07165 at 1451.865 kb on + strand, within MCAODC_07165 at 1451.866 kb on - strand, within MCAODC_07165 at 1451.866 kb on - strand, within MCAODC_07165 at 1451.866 kb on - strand, within MCAODC_07165 at 1451.894 kb on + strand, within MCAODC_07165 at 1452.046 kb on + strand at 1452.047 kb on - strand at 1452.084 kb on - strand at 1452.126 kb on - strand at 1452.128 kb on + strand at 1452.129 kb on - strand at 1452.139 kb on + strand at 1452.140 kb on - strand at 1452.140 kb on - strand at 1452.182 kb on + strand at 1452.182 kb on + strand at 1452.182 kb on + strand at 1452.199 kb on - strand at 1452.216 kb on - strand at 1452.245 kb on + strand, within MCAODC_07170 at 1452.245 kb on + strand, within MCAODC_07170 at 1452.246 kb on - strand, within MCAODC_07170 at 1452.247 kb on + strand, within MCAODC_07170 at 1452.247 kb on + strand, within MCAODC_07170 at 1452.248 kb on - strand, within MCAODC_07170 at 1452.248 kb on - strand, within MCAODC_07170 at 1452.248 kb on - strand, within MCAODC_07170 at 1452.278 kb on + strand, within MCAODC_07170 at 1452.283 kb on + strand, within MCAODC_07170 at 1452.379 kb on - strand, within MCAODC_07170 at 1452.399 kb on + strand, within MCAODC_07170 at 1452.400 kb on - strand, within MCAODC_07170 at 1452.404 kb on + strand, within MCAODC_07170 at 1452.404 kb on + strand, within MCAODC_07170 at 1452.405 kb on - strand, within MCAODC_07170 at 1452.405 kb on - strand, within MCAODC_07170 at 1452.405 kb on - strand, within MCAODC_07170 at 1452.408 kb on + strand, within MCAODC_07170 at 1452.409 kb on - strand, within MCAODC_07170 at 1452.433 kb on - strand, within MCAODC_07170 at 1452.455 kb on + strand, within MCAODC_07170 at 1452.486 kb on + strand, within MCAODC_07170 at 1452.487 kb on - strand, within MCAODC_07170 at 1452.487 kb on - strand, within MCAODC_07170 at 1452.491 kb on + strand, within MCAODC_07170 at 1452.510 kb on + strand, within MCAODC_07170 at 1452.510 kb on + strand, within MCAODC_07170 at 1452.511 kb on - strand, within MCAODC_07170 at 1452.539 kb on + strand, within MCAODC_07170 at 1452.552 kb on + strand, within MCAODC_07170 at 1452.553 kb on - strand, within MCAODC_07170 at 1452.555 kb on + strand, within MCAODC_07170 at 1452.576 kb on + strand, within MCAODC_07170 at 1452.577 kb on - strand, within MCAODC_07170 at 1452.577 kb on - strand, within MCAODC_07170 at 1452.577 kb on - strand, within MCAODC_07170 at 1452.579 kb on + strand, within MCAODC_07170 at 1452.579 kb on + strand, within MCAODC_07170 at 1452.604 kb on + strand, within MCAODC_07170 at 1452.604 kb on + strand, within MCAODC_07170 at 1452.605 kb on - strand, within MCAODC_07170 at 1452.629 kb on + strand, within MCAODC_07170 at 1452.630 kb on - strand, within MCAODC_07170 at 1452.652 kb on + strand, within MCAODC_07170 at 1452.652 kb on + strand, within MCAODC_07170 at 1452.653 kb on - strand, within MCAODC_07170 at 1452.653 kb on - strand, within MCAODC_07170 at 1452.653 kb on - strand, within MCAODC_07170 at 1452.678 kb on + strand, within MCAODC_07170 at 1452.678 kb on + strand, within MCAODC_07170 at 1452.678 kb on + strand, within MCAODC_07170 at 1452.679 kb on - strand, within MCAODC_07170 at 1452.679 kb on - strand, within MCAODC_07170 at 1452.682 kb on + strand, within MCAODC_07170 at 1452.682 kb on + strand, within MCAODC_07170 at 1452.682 kb on + strand, within MCAODC_07170 at 1452.699 kb on - strand, within MCAODC_07170 at 1452.715 kb on + strand, within MCAODC_07170 at 1452.716 kb on - strand, within MCAODC_07170 at 1452.719 kb on - strand, within MCAODC_07170 at 1452.719 kb on - strand, within MCAODC_07170 at 1452.760 kb on - strand, within MCAODC_07170 at 1452.778 kb on + strand, within MCAODC_07170 at 1452.778 kb on + strand, within MCAODC_07170 at 1452.779 kb on - strand, within MCAODC_07170 at 1452.779 kb on - strand, within MCAODC_07170 at 1452.779 kb on - strand, within MCAODC_07170 at 1452.780 kb on + strand, within MCAODC_07170 at 1452.781 kb on - strand, within MCAODC_07170 at 1452.781 kb on - strand, within MCAODC_07170 at 1452.801 kb on + strand, within MCAODC_07170 at 1452.802 kb on - strand, within MCAODC_07170 at 1452.802 kb on - strand, within MCAODC_07170 at 1452.850 kb on - strand, within MCAODC_07170 at 1452.902 kb on + strand, within MCAODC_07170 at 1452.903 kb on - strand, within MCAODC_07170 at 1452.903 kb on - strand, within MCAODC_07170 at 1452.920 kb on - strand, within MCAODC_07170 at 1452.940 kb on + strand, within MCAODC_07170 at 1452.943 kb on + strand, within MCAODC_07170 at 1452.944 kb on - strand, within MCAODC_07170 at 1452.956 kb on + strand, within MCAODC_07170 at 1452.957 kb on - strand, within MCAODC_07170 at 1452.962 kb on + strand, within MCAODC_07170 at 1452.962 kb on + strand, within MCAODC_07170 at 1452.962 kb on + strand, within MCAODC_07170 at 1452.966 kb on - strand, within MCAODC_07170 at 1452.987 kb on - strand, within MCAODC_07170 at 1452.987 kb on - strand, within MCAODC_07170 at 1452.990 kb on + strand, within MCAODC_07170 at 1452.990 kb on + strand, within MCAODC_07170 at 1452.991 kb on - strand, within MCAODC_07170 at 1453.005 kb on - strand, within MCAODC_07170 at 1453.009 kb on + strand, within MCAODC_07170 at 1453.010 kb on - strand, within MCAODC_07170 at 1453.019 kb on + strand, within MCAODC_07170 at 1453.019 kb on + strand, within MCAODC_07170 at 1453.020 kb on - strand, within MCAODC_07170 at 1453.020 kb on - strand, within MCAODC_07170 at 1453.020 kb on - strand, within MCAODC_07170 at 1453.026 kb on - strand, within MCAODC_07170 at 1453.038 kb on - strand, within MCAODC_07170 at 1453.038 kb on - strand, within MCAODC_07170 at 1453.086 kb on + strand, within MCAODC_07170 at 1453.086 kb on + strand, within MCAODC_07170 at 1453.087 kb on - strand, within MCAODC_07170 at 1453.087 kb on - strand, within MCAODC_07170 at 1453.087 kb on - strand, within MCAODC_07170 at 1453.097 kb on + strand at 1453.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,450,508 - acpP MCAODC_07150 0.71 +0.9 1,450,569 + +0.7 1,450,583 + +0.9 1,450,584 - -0.1 1,450,602 + -1.3 1,450,602 + +1.1 1,450,603 - +1.3 1,450,603 - +1.5 1,450,617 + +0.1 1,450,617 + -1.1 1,450,618 - -2.9 1,450,618 - +0.2 1,450,618 - -1.6 1,450,684 + MCAODC_07155 0.19 -1.2 1,450,692 - MCAODC_07155 0.20 -0.4 1,450,724 + MCAODC_07155 0.25 +0.1 1,450,754 - MCAODC_07155 0.29 +0.2 1,450,760 + MCAODC_07155 0.30 -0.2 1,450,760 + MCAODC_07155 0.30 +0.4 1,450,761 - MCAODC_07155 0.30 +0.1 1,450,761 - MCAODC_07155 0.30 +1.7 1,450,810 - MCAODC_07155 0.38 -0.3 1,450,907 + MCAODC_07155 0.52 +0.8 1,450,907 + MCAODC_07155 0.52 -1.3 1,450,971 + MCAODC_07155 0.62 +0.9 1,450,975 + MCAODC_07155 0.62 +0.3 1,450,975 + MCAODC_07155 0.62 -1.9 1,451,075 - MCAODC_07155 0.77 -3.0 1,451,127 + MCAODC_07155 0.85 -1.2 1,451,128 - MCAODC_07155 0.85 +0.7 1,451,128 - MCAODC_07155 0.85 +0.7 1,451,153 - MCAODC_07155 0.89 -1.8 1,451,184 + +0.0 1,451,265 + MCAODC_07160 0.12 +0.6 1,451,265 + MCAODC_07160 0.12 +0.4 1,451,265 + MCAODC_07160 0.12 +0.2 1,451,266 - MCAODC_07160 0.13 -1.0 1,451,266 - MCAODC_07160 0.13 +1.0 1,451,266 - MCAODC_07160 0.13 -2.0 1,451,323 - MCAODC_07160 0.51 -1.0 1,451,372 + MCAODC_07160 0.83 -0.1 1,451,373 - MCAODC_07160 0.84 +1.0 1,451,652 - MCAODC_07165 0.38 +0.1 1,451,768 + MCAODC_07165 0.54 -0.0 1,451,863 + MCAODC_07165 0.67 -0.0 1,451,864 - MCAODC_07165 0.68 +0.3 1,451,865 + MCAODC_07165 0.68 +0.7 1,451,866 - MCAODC_07165 0.68 +0.2 1,451,866 - MCAODC_07165 0.68 +0.3 1,451,866 - MCAODC_07165 0.68 -3.9 1,451,894 + MCAODC_07165 0.72 -1.3 1,452,046 + -0.9 1,452,047 - +0.4 1,452,084 - +1.7 1,452,126 - +0.4 1,452,128 + +0.1 1,452,129 - +0.2 1,452,139 + +1.0 1,452,140 - +1.6 1,452,140 - -0.1 1,452,182 + -0.6 1,452,182 + +1.3 1,452,182 + -0.2 1,452,199 - +1.1 1,452,216 - -2.0 1,452,245 + MCAODC_07170 0.10 +0.9 1,452,245 + MCAODC_07170 0.10 +0.2 1,452,246 - MCAODC_07170 0.10 +0.4 1,452,247 + MCAODC_07170 0.10 -2.8 1,452,247 + MCAODC_07170 0.10 +0.6 1,452,248 - MCAODC_07170 0.10 -0.9 1,452,248 - MCAODC_07170 0.10 -0.5 1,452,248 - MCAODC_07170 0.10 +0.6 1,452,278 + MCAODC_07170 0.13 -0.4 1,452,283 + MCAODC_07170 0.14 +0.7 1,452,379 - MCAODC_07170 0.23 -0.1 1,452,399 + MCAODC_07170 0.25 -0.3 1,452,400 - MCAODC_07170 0.25 +0.6 1,452,404 + MCAODC_07170 0.25 +0.8 1,452,404 + MCAODC_07170 0.25 -0.2 1,452,405 - MCAODC_07170 0.25 -1.7 1,452,405 - MCAODC_07170 0.25 -0.1 1,452,405 - MCAODC_07170 0.25 +0.4 1,452,408 + MCAODC_07170 0.25 -0.0 1,452,409 - MCAODC_07170 0.26 -2.2 1,452,433 - MCAODC_07170 0.28 +0.6 1,452,455 + MCAODC_07170 0.30 +0.3 1,452,486 + MCAODC_07170 0.33 +0.5 1,452,487 - MCAODC_07170 0.33 -0.3 1,452,487 - MCAODC_07170 0.33 -0.4 1,452,491 + MCAODC_07170 0.33 -0.5 1,452,510 + MCAODC_07170 0.35 +1.4 1,452,510 + MCAODC_07170 0.35 +0.8 1,452,511 - MCAODC_07170 0.35 +0.3 1,452,539 + MCAODC_07170 0.38 +0.1 1,452,552 + MCAODC_07170 0.39 -0.1 1,452,553 - MCAODC_07170 0.39 +2.4 1,452,555 + MCAODC_07170 0.39 +1.1 1,452,576 + MCAODC_07170 0.41 -2.1 1,452,577 - MCAODC_07170 0.41 -2.5 1,452,577 - MCAODC_07170 0.41 +0.7 1,452,577 - MCAODC_07170 0.41 +0.4 1,452,579 + MCAODC_07170 0.42 +0.8 1,452,579 + MCAODC_07170 0.42 +0.0 1,452,604 + MCAODC_07170 0.44 +0.5 1,452,604 + MCAODC_07170 0.44 -2.1 1,452,605 - MCAODC_07170 0.44 +0.3 1,452,629 + MCAODC_07170 0.46 +0.7 1,452,630 - MCAODC_07170 0.46 -0.4 1,452,652 + MCAODC_07170 0.49 +0.6 1,452,652 + MCAODC_07170 0.49 +1.6 1,452,653 - MCAODC_07170 0.49 -1.1 1,452,653 - MCAODC_07170 0.49 +0.8 1,452,653 - MCAODC_07170 0.49 -0.7 1,452,678 + MCAODC_07170 0.51 +0.7 1,452,678 + MCAODC_07170 0.51 +1.1 1,452,678 + MCAODC_07170 0.51 +1.7 1,452,679 - MCAODC_07170 0.51 +0.4 1,452,679 - MCAODC_07170 0.51 -0.4 1,452,682 + MCAODC_07170 0.51 +3.2 1,452,682 + MCAODC_07170 0.51 +0.3 1,452,682 + MCAODC_07170 0.51 -1.1 1,452,699 - MCAODC_07170 0.53 +0.2 1,452,715 + MCAODC_07170 0.54 -0.9 1,452,716 - MCAODC_07170 0.55 +0.2 1,452,719 - MCAODC_07170 0.55 +0.7 1,452,719 - MCAODC_07170 0.55 -0.7 1,452,760 - MCAODC_07170 0.59 +0.2 1,452,778 + MCAODC_07170 0.60 +0.4 1,452,778 + MCAODC_07170 0.60 +0.6 1,452,779 - MCAODC_07170 0.61 -0.0 1,452,779 - MCAODC_07170 0.61 -1.3 1,452,779 - MCAODC_07170 0.61 -0.4 1,452,780 + MCAODC_07170 0.61 +0.8 1,452,781 - MCAODC_07170 0.61 -0.5 1,452,781 - MCAODC_07170 0.61 +1.2 1,452,801 + MCAODC_07170 0.63 +0.5 1,452,802 - MCAODC_07170 0.63 +1.4 1,452,802 - MCAODC_07170 0.63 +1.1 1,452,850 - MCAODC_07170 0.67 -0.1 1,452,902 + MCAODC_07170 0.72 +0.6 1,452,903 - MCAODC_07170 0.72 -2.7 1,452,903 - MCAODC_07170 0.72 +1.7 1,452,920 - MCAODC_07170 0.74 -2.0 1,452,940 + MCAODC_07170 0.76 +0.2 1,452,943 + MCAODC_07170 0.76 -0.5 1,452,944 - MCAODC_07170 0.76 -0.9 1,452,956 + MCAODC_07170 0.77 -2.0 1,452,957 - MCAODC_07170 0.77 +0.7 1,452,962 + MCAODC_07170 0.78 +0.3 1,452,962 + MCAODC_07170 0.78 -3.2 1,452,962 + MCAODC_07170 0.78 -1.1 1,452,966 - MCAODC_07170 0.78 +1.0 1,452,987 - MCAODC_07170 0.80 -0.0 1,452,987 - MCAODC_07170 0.80 +0.1 1,452,990 + MCAODC_07170 0.80 -0.2 1,452,990 + MCAODC_07170 0.80 +0.0 1,452,991 - MCAODC_07170 0.81 -1.2 1,453,005 - MCAODC_07170 0.82 +0.5 1,453,009 + MCAODC_07170 0.82 -3.2 1,453,010 - MCAODC_07170 0.82 -2.7 1,453,019 + MCAODC_07170 0.83 -1.6 1,453,019 + MCAODC_07170 0.83 +0.6 1,453,020 - MCAODC_07170 0.83 +0.4 1,453,020 - MCAODC_07170 0.83 +1.1 1,453,020 - MCAODC_07170 0.83 -0.2 1,453,026 - MCAODC_07170 0.84 -0.7 1,453,038 - MCAODC_07170 0.85 -0.5 1,453,038 - MCAODC_07170 0.85 +1.7 1,453,086 + MCAODC_07170 0.90 +0.8 1,453,086 + MCAODC_07170 0.90 -3.0 1,453,087 - MCAODC_07170 0.90 +0.8 1,453,087 - MCAODC_07170 0.90 +0.7 1,453,087 - MCAODC_07170 0.90 +0.9 1,453,097 + -1.0 1,453,097 + +1.4
Or see this region's nucleotide sequence