Strain Fitness in Escherichia coli ECRC101 around MCAODC_07115

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_07105 and MCAODC_07110 overlap by 32 nucleotidesMCAODC_07110 and fadM overlap by 4 nucleotidesfadM and MCAODC_07120 are separated by 3 nucleotides MCAODC_07105: MCAODC_07105 - Conserved integral membrane protein, at 1,442,796 to 1,445,114 _07105 MCAODC_07110: MCAODC_07110 - Outer membrane lipoprotein carrier protein LolA, at 1,445,083 to 1,445,688 _07110 MCAODC_07115: fadM - 4-hydroxybenzoyl-CoA thioesterase, at 1,445,685 to 1,446,107 fadM MCAODC_07120: MCAODC_07120 - acyltransferase, at 1,446,111 to 1,447,787 _07120 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1444.815 kb on - strand, within MCAODC_07105at 1444.877 kb on + strand, within MCAODC_07105at 1444.878 kb on - strand, within MCAODC_07105at 1444.932 kb on - strandat 1444.932 kb on - strandat 1444.958 kb on + strandat 1444.985 kb on + strandat 1444.986 kb on - strandat 1444.986 kb on - strandat 1444.986 kb on - strandat 1444.986 kb on - strandat 1445.058 kb on + strandat 1445.058 kb on + strandat 1445.067 kb on + strandat 1445.084 kb on + strandat 1445.148 kb on + strand, within MCAODC_07110at 1445.179 kb on - strand, within MCAODC_07110at 1445.184 kb on + strand, within MCAODC_07110at 1445.204 kb on + strand, within MCAODC_07110at 1445.205 kb on - strand, within MCAODC_07110at 1445.371 kb on - strand, within MCAODC_07110at 1445.458 kb on + strand, within MCAODC_07110at 1445.461 kb on + strand, within MCAODC_07110at 1445.461 kb on + strand, within MCAODC_07110at 1445.461 kb on + strand, within MCAODC_07110at 1445.461 kb on + strand, within MCAODC_07110at 1445.461 kb on + strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.462 kb on - strand, within MCAODC_07110at 1445.559 kb on + strand, within MCAODC_07110at 1445.776 kb on + strand, within fadMat 1445.776 kb on + strand, within fadMat 1445.935 kb on + strand, within fadMat 1445.936 kb on - strand, within fadMat 1445.965 kb on + strand, within fadMat 1445.965 kb on + strand, within fadMat 1446.044 kb on + strand, within fadMat 1446.044 kb on + strand, within fadMat 1446.045 kb on - strand, within fadMat 1446.045 kb on - strand, within fadMat 1446.045 kb on - strand, within fadMat 1446.188 kb on - strandat 1446.208 kb on + strandat 1446.291 kb on - strand, within MCAODC_07120at 1446.291 kb on - strand, within MCAODC_07120at 1446.291 kb on - strand, within MCAODC_07120at 1446.347 kb on + strand, within MCAODC_07120at 1446.360 kb on - strand, within MCAODC_07120at 1446.524 kb on + strand, within MCAODC_07120at 1446.524 kb on + strand, within MCAODC_07120at 1446.525 kb on - strand, within MCAODC_07120at 1446.576 kb on + strand, within MCAODC_07120at 1446.576 kb on + strand, within MCAODC_07120at 1446.576 kb on + strand, within MCAODC_07120at 1446.577 kb on - strand, within MCAODC_07120at 1446.577 kb on - strand, within MCAODC_07120at 1446.632 kb on - strand, within MCAODC_07120at 1446.768 kb on + strand, within MCAODC_07120at 1446.768 kb on + strand, within MCAODC_07120at 1446.768 kb on + strand, within MCAODC_07120at 1446.769 kb on - strand, within MCAODC_07120at 1446.769 kb on - strand, within MCAODC_07120at 1446.819 kb on + strand, within MCAODC_07120at 1446.820 kb on - strand, within MCAODC_07120at 1446.832 kb on + strand, within MCAODC_07120at 1446.832 kb on + strand, within MCAODC_07120at 1446.833 kb on - strand, within MCAODC_07120at 1446.833 kb on - strand, within MCAODC_07120at 1446.833 kb on - strand, within MCAODC_07120at 1446.871 kb on - strand, within MCAODC_07120at 1446.943 kb on + strand, within MCAODC_07120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,444,815 - MCAODC_07105 0.87 +0.4
1,444,877 + MCAODC_07105 0.90 -0.5
1,444,878 - MCAODC_07105 0.90 +0.5
1,444,932 - -0.9
1,444,932 - +0.2
1,444,958 + +0.1
1,444,985 + -0.8
1,444,986 - +1.0
1,444,986 - +0.2
1,444,986 - +0.1
1,444,986 - +1.2
1,445,058 + +0.2
1,445,058 + +0.0
1,445,067 + +2.4
1,445,084 + +0.7
1,445,148 + MCAODC_07110 0.11 -4.0
1,445,179 - MCAODC_07110 0.16 -0.4
1,445,184 + MCAODC_07110 0.17 -0.2
1,445,204 + MCAODC_07110 0.20 -0.2
1,445,205 - MCAODC_07110 0.20 +0.4
1,445,371 - MCAODC_07110 0.48 -2.1
1,445,458 + MCAODC_07110 0.62 -0.0
1,445,461 + MCAODC_07110 0.62 +0.4
1,445,461 + MCAODC_07110 0.62 -0.2
1,445,461 + MCAODC_07110 0.62 -3.4
1,445,461 + MCAODC_07110 0.62 -0.4
1,445,461 + MCAODC_07110 0.62 -2.0
1,445,462 - MCAODC_07110 0.63 +0.1
1,445,462 - MCAODC_07110 0.63 +0.7
1,445,462 - MCAODC_07110 0.63 +0.4
1,445,462 - MCAODC_07110 0.63 -0.5
1,445,462 - MCAODC_07110 0.63 -3.2
1,445,462 - MCAODC_07110 0.63 -0.1
1,445,462 - MCAODC_07110 0.63 -1.1
1,445,462 - MCAODC_07110 0.63 -0.3
1,445,559 + MCAODC_07110 0.79 +1.4
1,445,776 + fadM MCAODC_07115 0.22 +0.9
1,445,776 + fadM MCAODC_07115 0.22 +1.1
1,445,935 + fadM MCAODC_07115 0.59 -0.0
1,445,936 - fadM MCAODC_07115 0.59 -0.3
1,445,965 + fadM MCAODC_07115 0.66 -1.5
1,445,965 + fadM MCAODC_07115 0.66 -0.1
1,446,044 + fadM MCAODC_07115 0.85 -3.2
1,446,044 + fadM MCAODC_07115 0.85 -0.2
1,446,045 - fadM MCAODC_07115 0.85 -1.1
1,446,045 - fadM MCAODC_07115 0.85 -1.2
1,446,045 - fadM MCAODC_07115 0.85 +1.2
1,446,188 - +2.2
1,446,208 + -1.1
1,446,291 - MCAODC_07120 0.11 +0.8
1,446,291 - MCAODC_07120 0.11 -0.2
1,446,291 - MCAODC_07120 0.11 -0.1
1,446,347 + MCAODC_07120 0.14 -0.4
1,446,360 - MCAODC_07120 0.15 +0.6
1,446,524 + MCAODC_07120 0.25 +0.6
1,446,524 + MCAODC_07120 0.25 -0.8
1,446,525 - MCAODC_07120 0.25 +0.2
1,446,576 + MCAODC_07120 0.28 +0.6
1,446,576 + MCAODC_07120 0.28 +0.4
1,446,576 + MCAODC_07120 0.28 -0.0
1,446,577 - MCAODC_07120 0.28 +0.1
1,446,577 - MCAODC_07120 0.28 -0.8
1,446,632 - MCAODC_07120 0.31 -0.2
1,446,768 + MCAODC_07120 0.39 -0.9
1,446,768 + MCAODC_07120 0.39 +0.7
1,446,768 + MCAODC_07120 0.39 +0.0
1,446,769 - MCAODC_07120 0.39 -1.9
1,446,769 - MCAODC_07120 0.39 -0.4
1,446,819 + MCAODC_07120 0.42 -0.3
1,446,820 - MCAODC_07120 0.42 +1.1
1,446,832 + MCAODC_07120 0.43 +0.9
1,446,832 + MCAODC_07120 0.43 -1.0
1,446,833 - MCAODC_07120 0.43 +0.6
1,446,833 - MCAODC_07120 0.43 +0.1
1,446,833 - MCAODC_07120 0.43 -1.3
1,446,871 - MCAODC_07120 0.45 +1.6
1,446,943 + MCAODC_07120 0.50 +0.9

Or see this region's nucleotide sequence