Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_07105 and MCAODC_07110 overlap by 32 nucleotides MCAODC_07110 and fadM overlap by 4 nucleotides fadM and MCAODC_07120 are separated by 3 nucleotides
MCAODC_07105: MCAODC_07105 - Conserved integral membrane protein, at 1,442,796 to 1,445,114
_07105
MCAODC_07110: MCAODC_07110 - Outer membrane lipoprotein carrier protein LolA, at 1,445,083 to 1,445,688
_07110
MCAODC_07115: fadM - 4-hydroxybenzoyl-CoA thioesterase, at 1,445,685 to 1,446,107
fadM
MCAODC_07120: MCAODC_07120 - acyltransferase, at 1,446,111 to 1,447,787
_07120
Position (kb)
1445
1446
1447 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1444.815 kb on - strand, within MCAODC_07105 at 1444.877 kb on + strand, within MCAODC_07105 at 1444.878 kb on - strand, within MCAODC_07105 at 1444.932 kb on - strand at 1444.932 kb on - strand at 1444.958 kb on + strand at 1444.985 kb on + strand at 1444.986 kb on - strand at 1444.986 kb on - strand at 1444.986 kb on - strand at 1444.986 kb on - strand at 1445.058 kb on + strand at 1445.058 kb on + strand at 1445.067 kb on + strand at 1445.084 kb on + strand at 1445.148 kb on + strand, within MCAODC_07110 at 1445.179 kb on - strand, within MCAODC_07110 at 1445.184 kb on + strand, within MCAODC_07110 at 1445.204 kb on + strand, within MCAODC_07110 at 1445.205 kb on - strand, within MCAODC_07110 at 1445.371 kb on - strand, within MCAODC_07110 at 1445.458 kb on + strand, within MCAODC_07110 at 1445.461 kb on + strand, within MCAODC_07110 at 1445.461 kb on + strand, within MCAODC_07110 at 1445.461 kb on + strand, within MCAODC_07110 at 1445.461 kb on + strand, within MCAODC_07110 at 1445.461 kb on + strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.462 kb on - strand, within MCAODC_07110 at 1445.559 kb on + strand, within MCAODC_07110 at 1445.776 kb on + strand, within fadM at 1445.776 kb on + strand, within fadM at 1445.935 kb on + strand, within fadM at 1445.936 kb on - strand, within fadM at 1445.965 kb on + strand, within fadM at 1445.965 kb on + strand, within fadM at 1446.044 kb on + strand, within fadM at 1446.044 kb on + strand, within fadM at 1446.045 kb on - strand, within fadM at 1446.045 kb on - strand, within fadM at 1446.045 kb on - strand, within fadM at 1446.188 kb on - strand at 1446.208 kb on + strand at 1446.291 kb on - strand, within MCAODC_07120 at 1446.291 kb on - strand, within MCAODC_07120 at 1446.291 kb on - strand, within MCAODC_07120 at 1446.347 kb on + strand, within MCAODC_07120 at 1446.360 kb on - strand, within MCAODC_07120 at 1446.524 kb on + strand, within MCAODC_07120 at 1446.524 kb on + strand, within MCAODC_07120 at 1446.525 kb on - strand, within MCAODC_07120 at 1446.576 kb on + strand, within MCAODC_07120 at 1446.576 kb on + strand, within MCAODC_07120 at 1446.576 kb on + strand, within MCAODC_07120 at 1446.577 kb on - strand, within MCAODC_07120 at 1446.577 kb on - strand, within MCAODC_07120 at 1446.632 kb on - strand, within MCAODC_07120 at 1446.768 kb on + strand, within MCAODC_07120 at 1446.768 kb on + strand, within MCAODC_07120 at 1446.768 kb on + strand, within MCAODC_07120 at 1446.769 kb on - strand, within MCAODC_07120 at 1446.769 kb on - strand, within MCAODC_07120 at 1446.819 kb on + strand, within MCAODC_07120 at 1446.820 kb on - strand, within MCAODC_07120 at 1446.832 kb on + strand, within MCAODC_07120 at 1446.832 kb on + strand, within MCAODC_07120 at 1446.833 kb on - strand, within MCAODC_07120 at 1446.833 kb on - strand, within MCAODC_07120 at 1446.833 kb on - strand, within MCAODC_07120 at 1446.871 kb on - strand, within MCAODC_07120 at 1446.943 kb on + strand, within MCAODC_07120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,444,815 - MCAODC_07105 0.87 +0.4 1,444,877 + MCAODC_07105 0.90 -0.5 1,444,878 - MCAODC_07105 0.90 +0.5 1,444,932 - -0.9 1,444,932 - +0.2 1,444,958 + +0.1 1,444,985 + -0.8 1,444,986 - +1.0 1,444,986 - +0.2 1,444,986 - +0.1 1,444,986 - +1.2 1,445,058 + +0.2 1,445,058 + +0.0 1,445,067 + +2.4 1,445,084 + +0.7 1,445,148 + MCAODC_07110 0.11 -4.0 1,445,179 - MCAODC_07110 0.16 -0.4 1,445,184 + MCAODC_07110 0.17 -0.2 1,445,204 + MCAODC_07110 0.20 -0.2 1,445,205 - MCAODC_07110 0.20 +0.4 1,445,371 - MCAODC_07110 0.48 -2.1 1,445,458 + MCAODC_07110 0.62 -0.0 1,445,461 + MCAODC_07110 0.62 +0.4 1,445,461 + MCAODC_07110 0.62 -0.2 1,445,461 + MCAODC_07110 0.62 -3.4 1,445,461 + MCAODC_07110 0.62 -0.4 1,445,461 + MCAODC_07110 0.62 -2.0 1,445,462 - MCAODC_07110 0.63 +0.1 1,445,462 - MCAODC_07110 0.63 +0.7 1,445,462 - MCAODC_07110 0.63 +0.4 1,445,462 - MCAODC_07110 0.63 -0.5 1,445,462 - MCAODC_07110 0.63 -3.2 1,445,462 - MCAODC_07110 0.63 -0.1 1,445,462 - MCAODC_07110 0.63 -1.1 1,445,462 - MCAODC_07110 0.63 -0.3 1,445,559 + MCAODC_07110 0.79 +1.4 1,445,776 + fadM MCAODC_07115 0.22 +0.9 1,445,776 + fadM MCAODC_07115 0.22 +1.1 1,445,935 + fadM MCAODC_07115 0.59 -0.0 1,445,936 - fadM MCAODC_07115 0.59 -0.3 1,445,965 + fadM MCAODC_07115 0.66 -1.5 1,445,965 + fadM MCAODC_07115 0.66 -0.1 1,446,044 + fadM MCAODC_07115 0.85 -3.2 1,446,044 + fadM MCAODC_07115 0.85 -0.2 1,446,045 - fadM MCAODC_07115 0.85 -1.1 1,446,045 - fadM MCAODC_07115 0.85 -1.2 1,446,045 - fadM MCAODC_07115 0.85 +1.2 1,446,188 - +2.2 1,446,208 + -1.1 1,446,291 - MCAODC_07120 0.11 +0.8 1,446,291 - MCAODC_07120 0.11 -0.2 1,446,291 - MCAODC_07120 0.11 -0.1 1,446,347 + MCAODC_07120 0.14 -0.4 1,446,360 - MCAODC_07120 0.15 +0.6 1,446,524 + MCAODC_07120 0.25 +0.6 1,446,524 + MCAODC_07120 0.25 -0.8 1,446,525 - MCAODC_07120 0.25 +0.2 1,446,576 + MCAODC_07120 0.28 +0.6 1,446,576 + MCAODC_07120 0.28 +0.4 1,446,576 + MCAODC_07120 0.28 -0.0 1,446,577 - MCAODC_07120 0.28 +0.1 1,446,577 - MCAODC_07120 0.28 -0.8 1,446,632 - MCAODC_07120 0.31 -0.2 1,446,768 + MCAODC_07120 0.39 -0.9 1,446,768 + MCAODC_07120 0.39 +0.7 1,446,768 + MCAODC_07120 0.39 +0.0 1,446,769 - MCAODC_07120 0.39 -1.9 1,446,769 - MCAODC_07120 0.39 -0.4 1,446,819 + MCAODC_07120 0.42 -0.3 1,446,820 - MCAODC_07120 0.42 +1.1 1,446,832 + MCAODC_07120 0.43 +0.9 1,446,832 + MCAODC_07120 0.43 -1.0 1,446,833 - MCAODC_07120 0.43 +0.6 1,446,833 - MCAODC_07120 0.43 +0.1 1,446,833 - MCAODC_07120 0.43 -1.3 1,446,871 - MCAODC_07120 0.45 +1.6 1,446,943 + MCAODC_07120 0.50 +0.9
Or see this region's nucleotide sequence