Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hdfR and Trp_trna are separated by 95 nucleotides Trp_trna and Asp_trna are separated by 8 nucleotides Asp_trna and 5S_rrna are separated by 54 nucleotides 5S_rrna and 23S_rrna are separated by 94 nucleotides
MCAODC_05180: hdfR - HTH-type transcriptional regulator HdfR, at 1,044,769 to 1,045,608
hdfR
MCAODC_05185: Trp_trna - tRNA-Trp(cca), at 1,045,704 to 1,045,779
_trna
MCAODC_05190: Asp_trna - tRNA-Asp(gtc), at 1,045,788 to 1,045,864
_trna
MCAODC_05195: 5S_rrna - 5S ribosomal RNA, at 1,045,919 to 1,046,034
_rrna
MCAODC_05200: 23S_rrna - 23S ribosomal RNA, at 1,046,129 to 1,049,033
_rrna
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1045.020 kb on + strand, within hdfR at 1045.020 kb on + strand, within hdfR at 1045.021 kb on - strand, within hdfR at 1045.032 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.074 kb on + strand, within hdfR at 1045.075 kb on - strand, within hdfR at 1045.081 kb on - strand, within hdfR at 1045.103 kb on - strand, within hdfR at 1045.130 kb on + strand, within hdfR at 1045.130 kb on + strand, within hdfR at 1045.203 kb on + strand, within hdfR at 1045.203 kb on + strand, within hdfR at 1045.203 kb on + strand, within hdfR at 1045.204 kb on - strand, within hdfR at 1045.204 kb on - strand, within hdfR at 1045.204 kb on - strand, within hdfR at 1045.206 kb on + strand, within hdfR at 1045.236 kb on + strand, within hdfR at 1045.265 kb on + strand, within hdfR at 1045.274 kb on - strand, within hdfR at 1045.274 kb on - strand, within hdfR at 1045.275 kb on + strand, within hdfR at 1045.275 kb on + strand, within hdfR at 1045.276 kb on - strand, within hdfR at 1045.291 kb on - strand, within hdfR at 1045.295 kb on + strand, within hdfR at 1045.295 kb on + strand, within hdfR at 1045.296 kb on - strand, within hdfR at 1045.308 kb on + strand, within hdfR at 1045.308 kb on + strand, within hdfR at 1045.308 kb on + strand, within hdfR at 1045.309 kb on - strand, within hdfR at 1045.309 kb on - strand, within hdfR at 1045.312 kb on + strand, within hdfR at 1045.312 kb on + strand, within hdfR at 1045.312 kb on + strand, within hdfR at 1045.312 kb on + strand, within hdfR at 1045.313 kb on - strand, within hdfR at 1045.313 kb on - strand, within hdfR at 1045.313 kb on - strand, within hdfR at 1045.532 kb on + strand at 1045.546 kb on - strand at 1045.557 kb on + strand at 1045.584 kb on + strand at 1045.584 kb on + strand at 1045.603 kb on + strand at 1045.603 kb on + strand at 1045.604 kb on - strand at 1045.604 kb on - strand at 1045.604 kb on - strand at 1045.606 kb on + strand at 1045.606 kb on + strand at 1045.659 kb on + strand at 1045.659 kb on + strand at 1045.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,045,020 + hdfR MCAODC_05180 0.30 -0.1 1,045,020 + hdfR MCAODC_05180 0.30 -2.5 1,045,021 - hdfR MCAODC_05180 0.30 -0.5 1,045,032 + hdfR MCAODC_05180 0.31 -1.5 1,045,074 + hdfR MCAODC_05180 0.36 +0.3 1,045,074 + hdfR MCAODC_05180 0.36 -1.1 1,045,074 + hdfR MCAODC_05180 0.36 -1.6 1,045,074 + hdfR MCAODC_05180 0.36 +1.7 1,045,074 + hdfR MCAODC_05180 0.36 +1.4 1,045,074 + hdfR MCAODC_05180 0.36 +1.5 1,045,074 + hdfR MCAODC_05180 0.36 -0.6 1,045,074 + hdfR MCAODC_05180 0.36 -0.9 1,045,074 + hdfR MCAODC_05180 0.36 +3.1 1,045,075 - hdfR MCAODC_05180 0.36 -3.1 1,045,081 - hdfR MCAODC_05180 0.37 -2.9 1,045,103 - hdfR MCAODC_05180 0.40 +0.2 1,045,130 + hdfR MCAODC_05180 0.43 -1.1 1,045,130 + hdfR MCAODC_05180 0.43 -2.4 1,045,203 + hdfR MCAODC_05180 0.52 -3.2 1,045,203 + hdfR MCAODC_05180 0.52 +0.1 1,045,203 + hdfR MCAODC_05180 0.52 -0.5 1,045,204 - hdfR MCAODC_05180 0.52 +0.0 1,045,204 - hdfR MCAODC_05180 0.52 -3.1 1,045,204 - hdfR MCAODC_05180 0.52 -0.6 1,045,206 + hdfR MCAODC_05180 0.52 -0.6 1,045,236 + hdfR MCAODC_05180 0.56 +0.2 1,045,265 + hdfR MCAODC_05180 0.59 -3.6 1,045,274 - hdfR MCAODC_05180 0.60 -1.4 1,045,274 - hdfR MCAODC_05180 0.60 -0.9 1,045,275 + hdfR MCAODC_05180 0.60 -1.5 1,045,275 + hdfR MCAODC_05180 0.60 +0.2 1,045,276 - hdfR MCAODC_05180 0.60 -4.5 1,045,291 - hdfR MCAODC_05180 0.62 -0.4 1,045,295 + hdfR MCAODC_05180 0.63 -1.3 1,045,295 + hdfR MCAODC_05180 0.63 -0.5 1,045,296 - hdfR MCAODC_05180 0.63 +0.4 1,045,308 + hdfR MCAODC_05180 0.64 -1.0 1,045,308 + hdfR MCAODC_05180 0.64 -0.5 1,045,308 + hdfR MCAODC_05180 0.64 -0.4 1,045,309 - hdfR MCAODC_05180 0.64 -2.6 1,045,309 - hdfR MCAODC_05180 0.64 -0.3 1,045,312 + hdfR MCAODC_05180 0.65 +0.6 1,045,312 + hdfR MCAODC_05180 0.65 -1.4 1,045,312 + hdfR MCAODC_05180 0.65 -0.6 1,045,312 + hdfR MCAODC_05180 0.65 -0.9 1,045,313 - hdfR MCAODC_05180 0.65 -2.2 1,045,313 - hdfR MCAODC_05180 0.65 -0.4 1,045,313 - hdfR MCAODC_05180 0.65 -3.2 1,045,532 + -0.5 1,045,546 - +2.8 1,045,557 + -0.6 1,045,584 + -0.2 1,045,584 + +0.8 1,045,603 + +1.3 1,045,603 + -0.6 1,045,604 - -0.6 1,045,604 - +0.5 1,045,604 - +1.1 1,045,606 + +2.4 1,045,606 + +0.5 1,045,659 + +0.1 1,045,659 + -2.5 1,045,682 - -0.2
Or see this region's nucleotide sequence