Strain Fitness in Escherichia coli ECRC101 around MCAODC_05185

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthdfR and Trp_trna are separated by 95 nucleotidesTrp_trna and Asp_trna are separated by 8 nucleotidesAsp_trna and 5S_rrna are separated by 54 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides MCAODC_05180: hdfR - HTH-type transcriptional regulator HdfR, at 1,044,769 to 1,045,608 hdfR MCAODC_05185: Trp_trna - tRNA-Trp(cca), at 1,045,704 to 1,045,779 _trna MCAODC_05190: Asp_trna - tRNA-Asp(gtc), at 1,045,788 to 1,045,864 _trna MCAODC_05195: 5S_rrna - 5S ribosomal RNA, at 1,045,919 to 1,046,034 _rrna MCAODC_05200: 23S_rrna - 23S ribosomal RNA, at 1,046,129 to 1,049,033 _rrna Position (kb) 1045 1046Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1044.704 kb on - strandat 1044.740 kb on + strandat 1044.741 kb on - strandat 1044.750 kb on + strandat 1044.845 kb on - strandat 1044.845 kb on - strandat 1045.020 kb on + strand, within hdfRat 1045.020 kb on + strand, within hdfRat 1045.021 kb on - strand, within hdfRat 1045.032 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.074 kb on + strand, within hdfRat 1045.075 kb on - strand, within hdfRat 1045.081 kb on - strand, within hdfRat 1045.103 kb on - strand, within hdfRat 1045.130 kb on + strand, within hdfRat 1045.130 kb on + strand, within hdfRat 1045.203 kb on + strand, within hdfRat 1045.203 kb on + strand, within hdfRat 1045.203 kb on + strand, within hdfRat 1045.204 kb on - strand, within hdfRat 1045.204 kb on - strand, within hdfRat 1045.204 kb on - strand, within hdfRat 1045.206 kb on + strand, within hdfRat 1045.236 kb on + strand, within hdfRat 1045.265 kb on + strand, within hdfRat 1045.274 kb on - strand, within hdfRat 1045.274 kb on - strand, within hdfRat 1045.275 kb on + strand, within hdfRat 1045.275 kb on + strand, within hdfRat 1045.276 kb on - strand, within hdfRat 1045.291 kb on - strand, within hdfRat 1045.295 kb on + strand, within hdfRat 1045.295 kb on + strand, within hdfRat 1045.296 kb on - strand, within hdfRat 1045.308 kb on + strand, within hdfRat 1045.308 kb on + strand, within hdfRat 1045.308 kb on + strand, within hdfRat 1045.309 kb on - strand, within hdfRat 1045.309 kb on - strand, within hdfRat 1045.312 kb on + strand, within hdfRat 1045.312 kb on + strand, within hdfRat 1045.312 kb on + strand, within hdfRat 1045.312 kb on + strand, within hdfRat 1045.313 kb on - strand, within hdfRat 1045.313 kb on - strand, within hdfRat 1045.313 kb on - strand, within hdfRat 1045.532 kb on + strandat 1045.546 kb on - strandat 1045.557 kb on + strandat 1045.584 kb on + strandat 1045.584 kb on + strandat 1045.603 kb on + strandat 1045.603 kb on + strandat 1045.604 kb on - strandat 1045.604 kb on - strandat 1045.604 kb on - strandat 1045.606 kb on + strandat 1045.606 kb on + strandat 1045.659 kb on + strandat 1045.659 kb on + strandat 1045.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,044,704 - +0.1
1,044,740 + -2.3
1,044,741 - -1.0
1,044,750 + +0.7
1,044,845 - -1.1
1,044,845 - -3.9
1,045,020 + hdfR MCAODC_05180 0.30 -0.1
1,045,020 + hdfR MCAODC_05180 0.30 -2.5
1,045,021 - hdfR MCAODC_05180 0.30 -0.5
1,045,032 + hdfR MCAODC_05180 0.31 -1.5
1,045,074 + hdfR MCAODC_05180 0.36 +0.3
1,045,074 + hdfR MCAODC_05180 0.36 -1.1
1,045,074 + hdfR MCAODC_05180 0.36 -1.6
1,045,074 + hdfR MCAODC_05180 0.36 +1.7
1,045,074 + hdfR MCAODC_05180 0.36 +1.4
1,045,074 + hdfR MCAODC_05180 0.36 +1.5
1,045,074 + hdfR MCAODC_05180 0.36 -0.6
1,045,074 + hdfR MCAODC_05180 0.36 -0.9
1,045,074 + hdfR MCAODC_05180 0.36 +3.1
1,045,075 - hdfR MCAODC_05180 0.36 -3.1
1,045,081 - hdfR MCAODC_05180 0.37 -2.9
1,045,103 - hdfR MCAODC_05180 0.40 +0.2
1,045,130 + hdfR MCAODC_05180 0.43 -1.1
1,045,130 + hdfR MCAODC_05180 0.43 -2.4
1,045,203 + hdfR MCAODC_05180 0.52 -3.2
1,045,203 + hdfR MCAODC_05180 0.52 +0.1
1,045,203 + hdfR MCAODC_05180 0.52 -0.5
1,045,204 - hdfR MCAODC_05180 0.52 +0.0
1,045,204 - hdfR MCAODC_05180 0.52 -3.1
1,045,204 - hdfR MCAODC_05180 0.52 -0.6
1,045,206 + hdfR MCAODC_05180 0.52 -0.6
1,045,236 + hdfR MCAODC_05180 0.56 +0.2
1,045,265 + hdfR MCAODC_05180 0.59 -3.6
1,045,274 - hdfR MCAODC_05180 0.60 -1.4
1,045,274 - hdfR MCAODC_05180 0.60 -0.9
1,045,275 + hdfR MCAODC_05180 0.60 -1.5
1,045,275 + hdfR MCAODC_05180 0.60 +0.2
1,045,276 - hdfR MCAODC_05180 0.60 -4.5
1,045,291 - hdfR MCAODC_05180 0.62 -0.4
1,045,295 + hdfR MCAODC_05180 0.63 -1.3
1,045,295 + hdfR MCAODC_05180 0.63 -0.5
1,045,296 - hdfR MCAODC_05180 0.63 +0.4
1,045,308 + hdfR MCAODC_05180 0.64 -1.0
1,045,308 + hdfR MCAODC_05180 0.64 -0.5
1,045,308 + hdfR MCAODC_05180 0.64 -0.4
1,045,309 - hdfR MCAODC_05180 0.64 -2.6
1,045,309 - hdfR MCAODC_05180 0.64 -0.3
1,045,312 + hdfR MCAODC_05180 0.65 +0.6
1,045,312 + hdfR MCAODC_05180 0.65 -1.4
1,045,312 + hdfR MCAODC_05180 0.65 -0.6
1,045,312 + hdfR MCAODC_05180 0.65 -0.9
1,045,313 - hdfR MCAODC_05180 0.65 -2.2
1,045,313 - hdfR MCAODC_05180 0.65 -0.4
1,045,313 - hdfR MCAODC_05180 0.65 -3.2
1,045,532 + -0.5
1,045,546 - +2.8
1,045,557 + -0.6
1,045,584 + -0.2
1,045,584 + +0.8
1,045,603 + +1.3
1,045,603 + -0.6
1,045,604 - -0.6
1,045,604 - +0.5
1,045,604 - +1.1
1,045,606 + +2.4
1,045,606 + +0.5
1,045,659 + +0.1
1,045,659 + -2.5
1,045,682 - -0.2

Or see this region's nucleotide sequence