Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argC and argE are separated by 153 nucleotides argE and ppc are separated by 351 nucleotides
MCAODC_04085: argC - N-acetyl-gamma-glutamyl-phosphate reductase, at 823,510 to 824,514
argC
MCAODC_04090: argE - acetylornithine deacetylase, at 824,668 to 825,819
argE
MCAODC_04095: ppc - phosphoenolpyruvate carboxylase, at 826,171 to 828,822
ppc
Position (kb) 824
825
826 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 823.698 kb on - strand, within argC at 823.716 kb on + strand, within argC at 823.736 kb on - strand, within argC at 823.785 kb on + strand, within argC at 823.786 kb on - strand, within argC at 823.837 kb on - strand, within argC at 823.884 kb on + strand, within argC at 823.909 kb on - strand, within argC at 823.909 kb on - strand, within argC at 823.941 kb on + strand, within argC at 823.942 kb on - strand, within argC at 823.942 kb on - strand, within argC at 824.086 kb on + strand, within argC at 824.092 kb on - strand, within argC at 824.117 kb on + strand, within argC at 824.155 kb on - strand, within argC at 824.155 kb on - strand, within argC at 824.166 kb on - strand, within argC at 824.174 kb on + strand, within argC at 824.175 kb on - strand, within argC at 824.175 kb on - strand, within argC at 824.175 kb on - strand, within argC at 824.252 kb on - strand, within argC at 824.262 kb on + strand, within argC at 824.359 kb on + strand, within argC at 824.360 kb on - strand, within argC at 824.428 kb on + strand at 824.429 kb on - strand at 824.429 kb on - strand at 824.429 kb on - strand at 824.437 kb on - strand at 824.452 kb on + strand at 824.465 kb on - strand at 824.481 kb on - strand at 824.505 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.558 kb on - strand at 824.558 kb on - strand at 824.590 kb on + strand at 824.607 kb on + strand at 824.701 kb on + strand at 824.702 kb on - strand at 824.796 kb on + strand, within argE at 824.853 kb on + strand, within argE at 824.854 kb on - strand, within argE at 824.856 kb on + strand, within argE at 824.857 kb on - strand, within argE at 824.857 kb on - strand, within argE at 824.857 kb on - strand, within argE at 824.869 kb on - strand, within argE at 824.955 kb on + strand, within argE at 824.983 kb on + strand, within argE at 824.990 kb on + strand, within argE at 825.024 kb on + strand, within argE at 825.024 kb on + strand, within argE at 825.077 kb on - strand, within argE at 825.077 kb on - strand, within argE at 825.124 kb on + strand, within argE at 825.139 kb on - strand, within argE at 825.139 kb on - strand, within argE at 825.139 kb on - strand, within argE at 825.185 kb on + strand, within argE at 825.185 kb on + strand, within argE at 825.185 kb on + strand, within argE at 825.186 kb on - strand, within argE at 825.186 kb on - strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.205 kb on - strand, within argE at 825.205 kb on - strand, within argE at 825.205 kb on - strand, within argE at 825.205 kb on - strand, within argE at 825.213 kb on + strand, within argE at 825.213 kb on + strand, within argE at 825.214 kb on - strand, within argE at 825.214 kb on - strand, within argE at 825.231 kb on + strand, within argE at 825.232 kb on - strand, within argE at 825.277 kb on - strand, within argE at 825.282 kb on + strand, within argE at 825.283 kb on - strand, within argE at 825.284 kb on + strand, within argE at 825.284 kb on + strand, within argE at 825.284 kb on + strand, within argE at 825.285 kb on - strand, within argE at 825.285 kb on - strand, within argE at 825.285 kb on - strand, within argE at 825.290 kb on + strand, within argE at 825.290 kb on + strand, within argE at 825.290 kb on + strand, within argE at 825.290 kb on + strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.313 kb on - strand, within argE at 825.352 kb on + strand, within argE at 825.352 kb on + strand, within argE at 825.353 kb on - strand, within argE at 825.379 kb on - strand, within argE at 825.397 kb on - strand, within argE at 825.417 kb on + strand, within argE at 825.417 kb on + strand, within argE at 825.418 kb on - strand, within argE at 825.423 kb on + strand, within argE at 825.423 kb on + strand, within argE at 825.423 kb on + strand, within argE at 825.423 kb on + strand, within argE at 825.424 kb on - strand, within argE at 825.448 kb on - strand, within argE at 825.489 kb on + strand, within argE at 825.490 kb on - strand, within argE at 825.490 kb on - strand, within argE at 825.490 kb on - strand, within argE at 825.581 kb on - strand, within argE at 825.655 kb on + strand, within argE at 825.655 kb on + strand, within argE at 825.656 kb on - strand, within argE at 825.656 kb on - strand, within argE at 825.656 kb on - strand, within argE at 825.686 kb on + strand, within argE at 825.687 kb on - strand, within argE at 825.721 kb on - strand at 825.746 kb on - strand at 825.763 kb on - strand at 825.763 kb on - strand at 825.763 kb on - strand at 825.817 kb on + strand at 825.883 kb on + strand at 825.883 kb on + strand at 825.883 kb on + strand at 825.884 kb on - strand at 825.921 kb on - strand at 825.934 kb on + strand at 825.934 kb on + strand at 825.934 kb on + strand at 825.935 kb on - strand at 825.962 kb on + strand at 825.968 kb on - strand at 825.994 kb on - strand at 825.994 kb on - strand at 825.994 kb on - strand at 826.012 kb on + strand at 826.016 kb on + strand at 826.017 kb on - strand at 826.017 kb on - strand at 826.017 kb on - strand at 826.063 kb on - strand at 826.072 kb on + strand at 826.072 kb on + strand at 826.073 kb on - strand at 826.074 kb on + strand at 826.075 kb on - strand at 826.075 kb on - strand at 826.105 kb on - strand at 826.105 kb on - strand at 826.138 kb on + strand at 826.148 kb on + strand at 826.148 kb on + strand at 826.149 kb on - strand at 826.149 kb on - strand at 826.167 kb on + strand at 826.168 kb on - strand at 826.170 kb on + strand at 826.170 kb on + strand at 826.171 kb on - strand at 826.171 kb on - strand at 826.171 kb on - strand at 826.184 kb on - strand at 826.184 kb on - strand at 826.197 kb on + strand at 826.197 kb on + strand at 826.198 kb on - strand at 826.198 kb on - strand at 826.198 kb on - strand at 826.200 kb on + strand at 826.201 kb on - strand at 826.201 kb on - strand at 826.201 kb on - strand at 826.209 kb on + strand at 826.209 kb on + strand at 826.209 kb on + strand at 826.210 kb on - strand at 826.210 kb on - strand at 826.274 kb on + strand at 826.274 kb on + strand at 826.287 kb on + strand at 826.287 kb on + strand at 826.288 kb on - strand at 826.288 kb on - strand at 826.288 kb on - strand at 826.337 kb on + strand at 826.338 kb on - strand at 826.349 kb on + strand at 826.395 kb on + strand at 826.432 kb on + strand at 826.433 kb on - strand at 826.433 kb on - strand at 826.497 kb on + strand, within ppc at 826.497 kb on + strand, within ppc at 826.498 kb on - strand, within ppc at 826.596 kb on + strand, within ppc at 826.605 kb on + strand, within ppc at 826.606 kb on - strand, within ppc at 826.644 kb on - strand, within ppc at 826.644 kb on - strand, within ppc at 826.644 kb on - strand, within ppc at 826.666 kb on - strand, within ppc at 826.747 kb on - strand, within ppc at 826.767 kb on - strand, within ppc at 826.793 kb on + strand, within ppc at 826.796 kb on + strand, within ppc
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 823,698 - argC MCAODC_04085 0.19 -0.8 823,716 + argC MCAODC_04085 0.20 -1.7 823,736 - argC MCAODC_04085 0.22 -4.0 823,785 + argC MCAODC_04085 0.27 -1.8 823,786 - argC MCAODC_04085 0.27 -0.0 823,837 - argC MCAODC_04085 0.33 -2.1 823,884 + argC MCAODC_04085 0.37 -1.9 823,909 - argC MCAODC_04085 0.40 -1.3 823,909 - argC MCAODC_04085 0.40 -1.5 823,941 + argC MCAODC_04085 0.43 -1.1 823,942 - argC MCAODC_04085 0.43 -3.2 823,942 - argC MCAODC_04085 0.43 -4.7 824,086 + argC MCAODC_04085 0.57 -2.7 824,092 - argC MCAODC_04085 0.58 -4.0 824,117 + argC MCAODC_04085 0.60 -2.0 824,155 - argC MCAODC_04085 0.64 -1.9 824,155 - argC MCAODC_04085 0.64 -2.7 824,166 - argC MCAODC_04085 0.65 -1.5 824,174 + argC MCAODC_04085 0.66 -0.2 824,175 - argC MCAODC_04085 0.66 -3.5 824,175 - argC MCAODC_04085 0.66 -0.4 824,175 - argC MCAODC_04085 0.66 -1.1 824,252 - argC MCAODC_04085 0.74 -1.2 824,262 + argC MCAODC_04085 0.75 -3.8 824,359 + argC MCAODC_04085 0.84 -3.5 824,360 - argC MCAODC_04085 0.85 -1.7 824,428 + -5.1 824,429 - -1.0 824,429 - -3.5 824,429 - -1.5 824,437 - -0.6 824,452 + -3.2 824,465 - -0.0 824,481 - -1.4 824,505 + -1.4 824,533 + -4.9 824,533 + -0.1 824,533 + -1.6 824,533 + -1.2 824,533 + -1.5 824,533 + -1.6 824,533 + -0.9 824,533 + -3.6 824,533 + +0.3 824,533 + -1.2 824,534 - -0.5 824,534 - -0.4 824,534 - -2.2 824,534 - -0.1 824,534 - -2.0 824,534 - -2.0 824,534 - +0.0 824,534 - -4.9 824,534 - -0.8 824,558 - +0.7 824,558 - -1.0 824,590 + -0.1 824,607 + -3.3 824,701 + -0.6 824,702 - -4.7 824,796 + argE MCAODC_04090 0.11 -2.1 824,853 + argE MCAODC_04090 0.16 -1.7 824,854 - argE MCAODC_04090 0.16 -4.5 824,856 + argE MCAODC_04090 0.16 -2.6 824,857 - argE MCAODC_04090 0.16 -2.2 824,857 - argE MCAODC_04090 0.16 -4.4 824,857 - argE MCAODC_04090 0.16 -3.5 824,869 - argE MCAODC_04090 0.17 -1.7 824,955 + argE MCAODC_04090 0.25 -0.2 824,983 + argE MCAODC_04090 0.27 -3.8 824,990 + argE MCAODC_04090 0.28 -1.5 825,024 + argE MCAODC_04090 0.31 -3.4 825,024 + argE MCAODC_04090 0.31 -4.3 825,077 - argE MCAODC_04090 0.36 -4.0 825,077 - argE MCAODC_04090 0.36 -1.3 825,124 + argE MCAODC_04090 0.40 -4.4 825,139 - argE MCAODC_04090 0.41 -2.9 825,139 - argE MCAODC_04090 0.41 -3.1 825,139 - argE MCAODC_04090 0.41 -2.2 825,185 + argE MCAODC_04090 0.45 -0.3 825,185 + argE MCAODC_04090 0.45 -1.0 825,185 + argE MCAODC_04090 0.45 -2.5 825,186 - argE MCAODC_04090 0.45 -3.9 825,186 - argE MCAODC_04090 0.45 -4.2 825,204 + argE MCAODC_04090 0.47 -0.2 825,204 + argE MCAODC_04090 0.47 -4.3 825,204 + argE MCAODC_04090 0.47 -3.3 825,204 + argE MCAODC_04090 0.47 -2.7 825,204 + argE MCAODC_04090 0.47 -2.7 825,205 - argE MCAODC_04090 0.47 -3.2 825,205 - argE MCAODC_04090 0.47 -0.4 825,205 - argE MCAODC_04090 0.47 -3.1 825,205 - argE MCAODC_04090 0.47 -1.0 825,213 + argE MCAODC_04090 0.47 -2.1 825,213 + argE MCAODC_04090 0.47 -2.7 825,214 - argE MCAODC_04090 0.47 -0.3 825,214 - argE MCAODC_04090 0.47 -0.6 825,231 + argE MCAODC_04090 0.49 -2.9 825,232 - argE MCAODC_04090 0.49 -4.6 825,277 - argE MCAODC_04090 0.53 -1.9 825,282 + argE MCAODC_04090 0.53 -1.8 825,283 - argE MCAODC_04090 0.53 -4.0 825,284 + argE MCAODC_04090 0.53 -2.8 825,284 + argE MCAODC_04090 0.53 -3.2 825,284 + argE MCAODC_04090 0.53 -5.4 825,285 - argE MCAODC_04090 0.54 -1.6 825,285 - argE MCAODC_04090 0.54 -2.6 825,285 - argE MCAODC_04090 0.54 -2.6 825,290 + argE MCAODC_04090 0.54 -1.5 825,290 + argE MCAODC_04090 0.54 -1.0 825,290 + argE MCAODC_04090 0.54 -1.1 825,290 + argE MCAODC_04090 0.54 -4.3 825,291 - argE MCAODC_04090 0.54 -3.0 825,291 - argE MCAODC_04090 0.54 -2.6 825,291 - argE MCAODC_04090 0.54 -3.6 825,291 - argE MCAODC_04090 0.54 +0.4 825,291 - argE MCAODC_04090 0.54 -1.3 825,291 - argE MCAODC_04090 0.54 -3.4 825,291 - argE MCAODC_04090 0.54 -1.4 825,313 - argE MCAODC_04090 0.56 -2.6 825,352 + argE MCAODC_04090 0.59 -2.7 825,352 + argE MCAODC_04090 0.59 -1.0 825,353 - argE MCAODC_04090 0.59 -4.6 825,379 - argE MCAODC_04090 0.62 -2.8 825,397 - argE MCAODC_04090 0.63 -3.4 825,417 + argE MCAODC_04090 0.65 -4.0 825,417 + argE MCAODC_04090 0.65 -1.5 825,418 - argE MCAODC_04090 0.65 -1.5 825,423 + argE MCAODC_04090 0.66 -3.6 825,423 + argE MCAODC_04090 0.66 -1.7 825,423 + argE MCAODC_04090 0.66 -2.6 825,423 + argE MCAODC_04090 0.66 -5.2 825,424 - argE MCAODC_04090 0.66 -0.0 825,448 - argE MCAODC_04090 0.68 -4.0 825,489 + argE MCAODC_04090 0.71 -0.9 825,490 - argE MCAODC_04090 0.71 -5.3 825,490 - argE MCAODC_04090 0.71 -2.6 825,490 - argE MCAODC_04090 0.71 -2.1 825,581 - argE MCAODC_04090 0.79 -4.3 825,655 + argE MCAODC_04090 0.86 -1.7 825,655 + argE MCAODC_04090 0.86 -1.7 825,656 - argE MCAODC_04090 0.86 -3.3 825,656 - argE MCAODC_04090 0.86 -3.7 825,656 - argE MCAODC_04090 0.86 -1.1 825,686 + argE MCAODC_04090 0.88 -3.8 825,687 - argE MCAODC_04090 0.88 -2.2 825,721 - -3.1 825,746 - -5.0 825,763 - -0.2 825,763 - -3.2 825,763 - -1.0 825,817 + -0.1 825,883 + +0.6 825,883 + -0.2 825,883 + +0.5 825,884 - -0.8 825,921 - +0.4 825,934 + +0.7 825,934 + -1.9 825,934 + +0.4 825,935 - +1.5 825,962 + -0.1 825,968 - +0.6 825,994 - -1.2 825,994 - +0.0 825,994 - +0.9 826,012 + -0.8 826,016 + -3.2 826,017 - -0.0 826,017 - +0.0 826,017 - +0.5 826,063 - -2.9 826,072 + -0.4 826,072 + +0.5 826,073 - -5.0 826,074 + -1.6 826,075 - -3.7 826,075 - -0.5 826,105 - -4.1 826,105 - -2.5 826,138 + -2.7 826,148 + -1.1 826,148 + -0.3 826,149 - -3.5 826,149 - -1.3 826,167 + -2.6 826,168 - -2.3 826,170 + -3.9 826,170 + -4.6 826,171 - -4.5 826,171 - -2.4 826,171 - -1.1 826,184 - -3.6 826,184 - -2.5 826,197 + -4.2 826,197 + -1.3 826,198 - -1.7 826,198 - -2.3 826,198 - -2.1 826,200 + -5.0 826,201 - -1.0 826,201 - -3.0 826,201 - -2.6 826,209 + -2.7 826,209 + -1.6 826,209 + -0.8 826,210 - -2.4 826,210 - -3.0 826,274 + -2.8 826,274 + -3.4 826,287 + -2.6 826,287 + -3.5 826,288 - -5.0 826,288 - -1.6 826,288 - -4.0 826,337 + -3.5 826,338 - -4.0 826,349 + -2.0 826,395 + -0.8 826,432 + -3.6 826,433 - -3.7 826,433 - -1.5 826,497 + ppc MCAODC_04095 0.12 -6.0 826,497 + ppc MCAODC_04095 0.12 -1.6 826,498 - ppc MCAODC_04095 0.12 -3.3 826,596 + ppc MCAODC_04095 0.16 -3.2 826,605 + ppc MCAODC_04095 0.16 -4.3 826,606 - ppc MCAODC_04095 0.16 -2.8 826,644 - ppc MCAODC_04095 0.18 -1.9 826,644 - ppc MCAODC_04095 0.18 -3.5 826,644 - ppc MCAODC_04095 0.18 -0.9 826,666 - ppc MCAODC_04095 0.19 -3.0 826,747 - ppc MCAODC_04095 0.22 -4.8 826,767 - ppc MCAODC_04095 0.22 -3.2 826,793 + ppc MCAODC_04095 0.23 -2.6 826,796 + ppc MCAODC_04095 0.24 -4.4
Or see this region's nucleotide sequence