Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argH and MCAODC_04080 are separated by 60 nucleotides MCAODC_04080 and argC are separated by 10 nucleotides argC and argE are separated by 153 nucleotides
MCAODC_04075: argH - argininosuccinate lyase, at 821,292 to 822,665
argH
MCAODC_04080: MCAODC_04080 - acetylglutamate kinase, at 822,726 to 823,499
_04080
MCAODC_04085: argC - N-acetyl-gamma-glutamyl-phosphate reductase, at 823,510 to 824,514
argC
MCAODC_04090: argE - acetylornithine deacetylase, at 824,668 to 825,819
argE
Position (kb) 823
824
825 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 822.567 kb on - strand at 822.567 kb on - strand at 822.587 kb on - strand at 822.665 kb on + strand at 822.665 kb on + strand at 822.666 kb on - strand at 822.727 kb on + strand at 822.732 kb on + strand at 822.733 kb on - strand at 822.733 kb on - strand at 822.756 kb on - strand at 822.804 kb on - strand, within MCAODC_04080 at 822.807 kb on + strand, within MCAODC_04080 at 822.858 kb on + strand, within MCAODC_04080 at 822.859 kb on - strand, within MCAODC_04080 at 822.872 kb on + strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.875 kb on + strand, within MCAODC_04080 at 822.875 kb on + strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 823.082 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.113 kb on - strand, within MCAODC_04080 at 823.146 kb on + strand, within MCAODC_04080 at 823.146 kb on + strand, within MCAODC_04080 at 823.147 kb on - strand, within MCAODC_04080 at 823.147 kb on - strand, within MCAODC_04080 at 823.203 kb on + strand, within MCAODC_04080 at 823.204 kb on - strand, within MCAODC_04080 at 823.204 kb on - strand, within MCAODC_04080 at 823.247 kb on + strand, within MCAODC_04080 at 823.248 kb on - strand, within MCAODC_04080 at 823.248 kb on - strand, within MCAODC_04080 at 823.414 kb on + strand, within MCAODC_04080 at 823.415 kb on - strand, within MCAODC_04080 at 823.415 kb on - strand, within MCAODC_04080 at 823.468 kb on - strand at 823.484 kb on + strand at 823.485 kb on - strand at 823.488 kb on + strand at 823.489 kb on - strand at 823.489 kb on - strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.515 kb on + strand at 823.515 kb on + strand at 823.516 kb on - strand at 823.561 kb on + strand at 823.561 kb on + strand at 823.588 kb on + strand at 823.588 kb on + strand at 823.698 kb on - strand, within argC at 823.716 kb on + strand, within argC at 823.736 kb on - strand, within argC at 823.785 kb on + strand, within argC at 823.786 kb on - strand, within argC at 823.837 kb on - strand, within argC at 823.884 kb on + strand, within argC at 823.909 kb on - strand, within argC at 823.909 kb on - strand, within argC at 823.941 kb on + strand, within argC at 823.942 kb on - strand, within argC at 823.942 kb on - strand, within argC at 824.086 kb on + strand, within argC at 824.092 kb on - strand, within argC at 824.117 kb on + strand, within argC at 824.155 kb on - strand, within argC at 824.155 kb on - strand, within argC at 824.166 kb on - strand, within argC at 824.174 kb on + strand, within argC at 824.175 kb on - strand, within argC at 824.175 kb on - strand, within argC at 824.175 kb on - strand, within argC at 824.252 kb on - strand, within argC at 824.262 kb on + strand, within argC at 824.359 kb on + strand, within argC at 824.360 kb on - strand, within argC at 824.428 kb on + strand at 824.429 kb on - strand at 824.429 kb on - strand at 824.429 kb on - strand at 824.437 kb on - strand at 824.452 kb on + strand at 824.465 kb on - strand at 824.481 kb on - strand at 824.505 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.533 kb on + strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.534 kb on - strand at 824.558 kb on - strand at 824.558 kb on - strand at 824.590 kb on + strand at 824.607 kb on + strand at 824.701 kb on + strand at 824.702 kb on - strand at 824.796 kb on + strand, within argE at 824.853 kb on + strand, within argE at 824.854 kb on - strand, within argE at 824.856 kb on + strand, within argE at 824.857 kb on - strand, within argE at 824.857 kb on - strand, within argE at 824.857 kb on - strand, within argE at 824.869 kb on - strand, within argE at 824.955 kb on + strand, within argE at 824.983 kb on + strand, within argE at 824.990 kb on + strand, within argE at 825.024 kb on + strand, within argE at 825.024 kb on + strand, within argE at 825.077 kb on - strand, within argE at 825.077 kb on - strand, within argE at 825.124 kb on + strand, within argE at 825.139 kb on - strand, within argE at 825.139 kb on - strand, within argE at 825.139 kb on - strand, within argE at 825.185 kb on + strand, within argE at 825.185 kb on + strand, within argE at 825.185 kb on + strand, within argE at 825.186 kb on - strand, within argE at 825.186 kb on - strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.204 kb on + strand, within argE at 825.205 kb on - strand, within argE at 825.205 kb on - strand, within argE at 825.205 kb on - strand, within argE at 825.205 kb on - strand, within argE at 825.213 kb on + strand, within argE at 825.213 kb on + strand, within argE at 825.214 kb on - strand, within argE at 825.214 kb on - strand, within argE at 825.231 kb on + strand, within argE at 825.232 kb on - strand, within argE at 825.277 kb on - strand, within argE at 825.282 kb on + strand, within argE at 825.283 kb on - strand, within argE at 825.284 kb on + strand, within argE at 825.284 kb on + strand, within argE at 825.284 kb on + strand, within argE at 825.285 kb on - strand, within argE at 825.285 kb on - strand, within argE at 825.285 kb on - strand, within argE at 825.290 kb on + strand, within argE at 825.290 kb on + strand, within argE at 825.290 kb on + strand, within argE at 825.290 kb on + strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.291 kb on - strand, within argE at 825.313 kb on - strand, within argE at 825.352 kb on + strand, within argE at 825.352 kb on + strand, within argE at 825.353 kb on - strand, within argE at 825.379 kb on - strand, within argE at 825.397 kb on - strand, within argE at 825.417 kb on + strand, within argE at 825.417 kb on + strand, within argE at 825.418 kb on - strand, within argE at 825.423 kb on + strand, within argE at 825.423 kb on + strand, within argE at 825.423 kb on + strand, within argE at 825.423 kb on + strand, within argE at 825.424 kb on - strand, within argE at 825.448 kb on - strand, within argE at 825.489 kb on + strand, within argE at 825.490 kb on - strand, within argE at 825.490 kb on - strand, within argE at 825.490 kb on - strand, within argE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 822,567 - -3.7 822,567 - -5.3 822,587 - -4.2 822,665 + -4.3 822,665 + -3.6 822,666 - -1.9 822,727 + -2.6 822,732 + -1.5 822,733 - -0.6 822,733 - -0.5 822,756 - -0.6 822,804 - MCAODC_04080 0.10 -3.3 822,807 + MCAODC_04080 0.10 -4.0 822,858 + MCAODC_04080 0.17 -2.6 822,859 - MCAODC_04080 0.17 -2.9 822,872 + MCAODC_04080 0.19 -3.4 822,873 - MCAODC_04080 0.19 -4.1 822,873 - MCAODC_04080 0.19 -2.6 822,873 - MCAODC_04080 0.19 -1.5 822,873 - MCAODC_04080 0.19 -1.7 822,875 + MCAODC_04080 0.19 -3.3 822,875 + MCAODC_04080 0.19 -0.4 822,876 - MCAODC_04080 0.19 -2.1 822,876 - MCAODC_04080 0.19 -3.7 822,876 - MCAODC_04080 0.19 -3.6 823,082 - MCAODC_04080 0.46 -5.7 823,107 - MCAODC_04080 0.49 -1.4 823,107 - MCAODC_04080 0.49 -4.3 823,107 - MCAODC_04080 0.49 -1.6 823,107 - MCAODC_04080 0.49 -3.7 823,113 - MCAODC_04080 0.50 -4.8 823,146 + MCAODC_04080 0.54 -3.9 823,146 + MCAODC_04080 0.54 -3.8 823,147 - MCAODC_04080 0.54 -4.5 823,147 - MCAODC_04080 0.54 -2.9 823,203 + MCAODC_04080 0.62 -4.2 823,204 - MCAODC_04080 0.62 -3.5 823,204 - MCAODC_04080 0.62 -1.5 823,247 + MCAODC_04080 0.67 -3.3 823,248 - MCAODC_04080 0.67 -0.3 823,248 - MCAODC_04080 0.67 -3.2 823,414 + MCAODC_04080 0.89 -2.9 823,415 - MCAODC_04080 0.89 -3.3 823,415 - MCAODC_04080 0.89 -2.2 823,468 - -1.3 823,484 + -0.4 823,485 - -0.2 823,488 + -3.7 823,489 - -0.2 823,489 - -3.5 823,511 + -4.1 823,511 + -4.3 823,511 + -4.0 823,511 + -4.8 823,515 + -3.4 823,515 + -4.1 823,516 - -1.1 823,561 + -2.2 823,561 + -1.2 823,588 + -2.7 823,588 + +0.4 823,698 - argC MCAODC_04085 0.19 -0.8 823,716 + argC MCAODC_04085 0.20 -1.7 823,736 - argC MCAODC_04085 0.22 -4.0 823,785 + argC MCAODC_04085 0.27 -1.8 823,786 - argC MCAODC_04085 0.27 -0.0 823,837 - argC MCAODC_04085 0.33 -2.1 823,884 + argC MCAODC_04085 0.37 -1.9 823,909 - argC MCAODC_04085 0.40 -1.3 823,909 - argC MCAODC_04085 0.40 -1.5 823,941 + argC MCAODC_04085 0.43 -1.1 823,942 - argC MCAODC_04085 0.43 -3.2 823,942 - argC MCAODC_04085 0.43 -4.7 824,086 + argC MCAODC_04085 0.57 -2.7 824,092 - argC MCAODC_04085 0.58 -4.0 824,117 + argC MCAODC_04085 0.60 -2.0 824,155 - argC MCAODC_04085 0.64 -1.9 824,155 - argC MCAODC_04085 0.64 -2.7 824,166 - argC MCAODC_04085 0.65 -1.5 824,174 + argC MCAODC_04085 0.66 -0.2 824,175 - argC MCAODC_04085 0.66 -3.5 824,175 - argC MCAODC_04085 0.66 -0.4 824,175 - argC MCAODC_04085 0.66 -1.1 824,252 - argC MCAODC_04085 0.74 -1.2 824,262 + argC MCAODC_04085 0.75 -3.8 824,359 + argC MCAODC_04085 0.84 -3.5 824,360 - argC MCAODC_04085 0.85 -1.7 824,428 + -5.1 824,429 - -1.0 824,429 - -3.5 824,429 - -1.5 824,437 - -0.6 824,452 + -3.2 824,465 - -0.0 824,481 - -1.4 824,505 + -1.4 824,533 + -4.9 824,533 + -0.1 824,533 + -1.6 824,533 + -1.2 824,533 + -1.5 824,533 + -1.6 824,533 + -0.9 824,533 + -3.6 824,533 + +0.3 824,533 + -1.2 824,534 - -0.5 824,534 - -0.4 824,534 - -2.2 824,534 - -0.1 824,534 - -2.0 824,534 - -2.0 824,534 - +0.0 824,534 - -4.9 824,534 - -0.8 824,558 - +0.7 824,558 - -1.0 824,590 + -0.1 824,607 + -3.3 824,701 + -0.6 824,702 - -4.7 824,796 + argE MCAODC_04090 0.11 -2.1 824,853 + argE MCAODC_04090 0.16 -1.7 824,854 - argE MCAODC_04090 0.16 -4.5 824,856 + argE MCAODC_04090 0.16 -2.6 824,857 - argE MCAODC_04090 0.16 -2.2 824,857 - argE MCAODC_04090 0.16 -4.4 824,857 - argE MCAODC_04090 0.16 -3.5 824,869 - argE MCAODC_04090 0.17 -1.7 824,955 + argE MCAODC_04090 0.25 -0.2 824,983 + argE MCAODC_04090 0.27 -3.8 824,990 + argE MCAODC_04090 0.28 -1.5 825,024 + argE MCAODC_04090 0.31 -3.4 825,024 + argE MCAODC_04090 0.31 -4.3 825,077 - argE MCAODC_04090 0.36 -4.0 825,077 - argE MCAODC_04090 0.36 -1.3 825,124 + argE MCAODC_04090 0.40 -4.4 825,139 - argE MCAODC_04090 0.41 -2.9 825,139 - argE MCAODC_04090 0.41 -3.1 825,139 - argE MCAODC_04090 0.41 -2.2 825,185 + argE MCAODC_04090 0.45 -0.3 825,185 + argE MCAODC_04090 0.45 -1.0 825,185 + argE MCAODC_04090 0.45 -2.5 825,186 - argE MCAODC_04090 0.45 -3.9 825,186 - argE MCAODC_04090 0.45 -4.2 825,204 + argE MCAODC_04090 0.47 -0.2 825,204 + argE MCAODC_04090 0.47 -4.3 825,204 + argE MCAODC_04090 0.47 -3.3 825,204 + argE MCAODC_04090 0.47 -2.7 825,204 + argE MCAODC_04090 0.47 -2.7 825,205 - argE MCAODC_04090 0.47 -3.2 825,205 - argE MCAODC_04090 0.47 -0.4 825,205 - argE MCAODC_04090 0.47 -3.1 825,205 - argE MCAODC_04090 0.47 -1.0 825,213 + argE MCAODC_04090 0.47 -2.1 825,213 + argE MCAODC_04090 0.47 -2.7 825,214 - argE MCAODC_04090 0.47 -0.3 825,214 - argE MCAODC_04090 0.47 -0.6 825,231 + argE MCAODC_04090 0.49 -2.9 825,232 - argE MCAODC_04090 0.49 -4.6 825,277 - argE MCAODC_04090 0.53 -1.9 825,282 + argE MCAODC_04090 0.53 -1.8 825,283 - argE MCAODC_04090 0.53 -4.0 825,284 + argE MCAODC_04090 0.53 -2.8 825,284 + argE MCAODC_04090 0.53 -3.2 825,284 + argE MCAODC_04090 0.53 -5.4 825,285 - argE MCAODC_04090 0.54 -1.6 825,285 - argE MCAODC_04090 0.54 -2.6 825,285 - argE MCAODC_04090 0.54 -2.6 825,290 + argE MCAODC_04090 0.54 -1.5 825,290 + argE MCAODC_04090 0.54 -1.0 825,290 + argE MCAODC_04090 0.54 -1.1 825,290 + argE MCAODC_04090 0.54 -4.3 825,291 - argE MCAODC_04090 0.54 -3.0 825,291 - argE MCAODC_04090 0.54 -2.6 825,291 - argE MCAODC_04090 0.54 -3.6 825,291 - argE MCAODC_04090 0.54 +0.4 825,291 - argE MCAODC_04090 0.54 -1.3 825,291 - argE MCAODC_04090 0.54 -3.4 825,291 - argE MCAODC_04090 0.54 -1.4 825,313 - argE MCAODC_04090 0.56 -2.6 825,352 + argE MCAODC_04090 0.59 -2.7 825,352 + argE MCAODC_04090 0.59 -1.0 825,353 - argE MCAODC_04090 0.59 -4.6 825,379 - argE MCAODC_04090 0.62 -2.8 825,397 - argE MCAODC_04090 0.63 -3.4 825,417 + argE MCAODC_04090 0.65 -4.0 825,417 + argE MCAODC_04090 0.65 -1.5 825,418 - argE MCAODC_04090 0.65 -1.5 825,423 + argE MCAODC_04090 0.66 -3.6 825,423 + argE MCAODC_04090 0.66 -1.7 825,423 + argE MCAODC_04090 0.66 -2.6 825,423 + argE MCAODC_04090 0.66 -5.2 825,424 - argE MCAODC_04090 0.66 -0.0 825,448 - argE MCAODC_04090 0.68 -4.0 825,489 + argE MCAODC_04090 0.71 -0.9 825,490 - argE MCAODC_04090 0.71 -5.3 825,490 - argE MCAODC_04090 0.71 -2.6 825,490 - argE MCAODC_04090 0.71 -2.1
Or see this region's nucleotide sequence