Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argH and MCAODC_04080 are separated by 60 nucleotides MCAODC_04080 and argC are separated by 10 nucleotides
MCAODC_04075: argH - argininosuccinate lyase, at 821,292 to 822,665
argH
MCAODC_04080: MCAODC_04080 - acetylglutamate kinase, at 822,726 to 823,499
_04080
MCAODC_04085: argC - N-acetyl-gamma-glutamyl-phosphate reductase, at 823,510 to 824,514
argC
Position (kb) 822
823
824 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 822.082 kb on - strand, within argH at 822.151 kb on + strand, within argH at 822.151 kb on + strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.283 kb on - strand, within argH at 822.283 kb on - strand, within argH at 822.296 kb on + strand, within argH at 822.297 kb on - strand, within argH at 822.297 kb on - strand, within argH at 822.338 kb on + strand, within argH at 822.339 kb on - strand, within argH at 822.339 kb on - strand, within argH at 822.339 kb on - strand, within argH at 822.410 kb on + strand, within argH at 822.410 kb on + strand, within argH at 822.411 kb on - strand, within argH at 822.417 kb on - strand, within argH at 822.567 kb on - strand at 822.567 kb on - strand at 822.587 kb on - strand at 822.665 kb on + strand at 822.665 kb on + strand at 822.666 kb on - strand at 822.727 kb on + strand at 822.732 kb on + strand at 822.733 kb on - strand at 822.733 kb on - strand at 822.756 kb on - strand at 822.804 kb on - strand, within MCAODC_04080 at 822.807 kb on + strand, within MCAODC_04080 at 822.858 kb on + strand, within MCAODC_04080 at 822.859 kb on - strand, within MCAODC_04080 at 822.872 kb on + strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.875 kb on + strand, within MCAODC_04080 at 822.875 kb on + strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 823.082 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.113 kb on - strand, within MCAODC_04080 at 823.146 kb on + strand, within MCAODC_04080 at 823.146 kb on + strand, within MCAODC_04080 at 823.147 kb on - strand, within MCAODC_04080 at 823.147 kb on - strand, within MCAODC_04080 at 823.203 kb on + strand, within MCAODC_04080 at 823.204 kb on - strand, within MCAODC_04080 at 823.204 kb on - strand, within MCAODC_04080 at 823.247 kb on + strand, within MCAODC_04080 at 823.248 kb on - strand, within MCAODC_04080 at 823.248 kb on - strand, within MCAODC_04080 at 823.414 kb on + strand, within MCAODC_04080 at 823.415 kb on - strand, within MCAODC_04080 at 823.415 kb on - strand, within MCAODC_04080 at 823.468 kb on - strand at 823.484 kb on + strand at 823.485 kb on - strand at 823.488 kb on + strand at 823.489 kb on - strand at 823.489 kb on - strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.515 kb on + strand at 823.515 kb on + strand at 823.516 kb on - strand at 823.561 kb on + strand at 823.561 kb on + strand at 823.588 kb on + strand at 823.588 kb on + strand at 823.698 kb on - strand, within argC at 823.716 kb on + strand, within argC at 823.736 kb on - strand, within argC at 823.785 kb on + strand, within argC at 823.786 kb on - strand, within argC at 823.837 kb on - strand, within argC at 823.884 kb on + strand, within argC at 823.909 kb on - strand, within argC at 823.909 kb on - strand, within argC at 823.941 kb on + strand, within argC at 823.942 kb on - strand, within argC at 823.942 kb on - strand, within argC at 824.086 kb on + strand, within argC at 824.092 kb on - strand, within argC at 824.117 kb on + strand, within argC at 824.155 kb on - strand, within argC at 824.155 kb on - strand, within argC at 824.166 kb on - strand, within argC at 824.174 kb on + strand, within argC at 824.175 kb on - strand, within argC at 824.175 kb on - strand, within argC at 824.175 kb on - strand, within argC at 824.252 kb on - strand, within argC at 824.262 kb on + strand, within argC at 824.359 kb on + strand, within argC at 824.360 kb on - strand, within argC at 824.428 kb on + strand at 824.429 kb on - strand at 824.429 kb on - strand at 824.429 kb on - strand at 824.437 kb on - strand at 824.452 kb on + strand at 824.465 kb on - strand at 824.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 822,082 - argH MCAODC_04075 0.57 -3.0 822,151 + argH MCAODC_04075 0.63 -1.3 822,151 + argH MCAODC_04075 0.63 +1.5 822,152 - argH MCAODC_04075 0.63 -2.2 822,152 - argH MCAODC_04075 0.63 -2.8 822,152 - argH MCAODC_04075 0.63 -1.2 822,152 - argH MCAODC_04075 0.63 -3.9 822,152 - argH MCAODC_04075 0.63 -0.4 822,206 - argH MCAODC_04075 0.67 -3.9 822,206 - argH MCAODC_04075 0.67 -3.8 822,206 - argH MCAODC_04075 0.67 -0.8 822,206 - argH MCAODC_04075 0.67 -0.7 822,283 - argH MCAODC_04075 0.72 -4.8 822,283 - argH MCAODC_04075 0.72 -3.4 822,296 + argH MCAODC_04075 0.73 -1.4 822,297 - argH MCAODC_04075 0.73 -5.6 822,297 - argH MCAODC_04075 0.73 -5.2 822,338 + argH MCAODC_04075 0.76 -5.6 822,339 - argH MCAODC_04075 0.76 -6.2 822,339 - argH MCAODC_04075 0.76 -3.4 822,339 - argH MCAODC_04075 0.76 -3.7 822,410 + argH MCAODC_04075 0.81 -2.1 822,410 + argH MCAODC_04075 0.81 -1.8 822,411 - argH MCAODC_04075 0.81 -2.3 822,417 - argH MCAODC_04075 0.82 -5.0 822,567 - -3.7 822,567 - -5.3 822,587 - -4.2 822,665 + -4.3 822,665 + -3.6 822,666 - -1.9 822,727 + -2.6 822,732 + -1.5 822,733 - -0.6 822,733 - -0.5 822,756 - -0.6 822,804 - MCAODC_04080 0.10 -3.3 822,807 + MCAODC_04080 0.10 -4.0 822,858 + MCAODC_04080 0.17 -2.6 822,859 - MCAODC_04080 0.17 -2.9 822,872 + MCAODC_04080 0.19 -3.4 822,873 - MCAODC_04080 0.19 -4.1 822,873 - MCAODC_04080 0.19 -2.6 822,873 - MCAODC_04080 0.19 -1.5 822,873 - MCAODC_04080 0.19 -1.7 822,875 + MCAODC_04080 0.19 -3.3 822,875 + MCAODC_04080 0.19 -0.4 822,876 - MCAODC_04080 0.19 -2.1 822,876 - MCAODC_04080 0.19 -3.7 822,876 - MCAODC_04080 0.19 -3.6 823,082 - MCAODC_04080 0.46 -5.7 823,107 - MCAODC_04080 0.49 -1.4 823,107 - MCAODC_04080 0.49 -4.3 823,107 - MCAODC_04080 0.49 -1.6 823,107 - MCAODC_04080 0.49 -3.7 823,113 - MCAODC_04080 0.50 -4.8 823,146 + MCAODC_04080 0.54 -3.9 823,146 + MCAODC_04080 0.54 -3.8 823,147 - MCAODC_04080 0.54 -4.5 823,147 - MCAODC_04080 0.54 -2.9 823,203 + MCAODC_04080 0.62 -4.2 823,204 - MCAODC_04080 0.62 -3.5 823,204 - MCAODC_04080 0.62 -1.5 823,247 + MCAODC_04080 0.67 -3.3 823,248 - MCAODC_04080 0.67 -0.3 823,248 - MCAODC_04080 0.67 -3.2 823,414 + MCAODC_04080 0.89 -2.9 823,415 - MCAODC_04080 0.89 -3.3 823,415 - MCAODC_04080 0.89 -2.2 823,468 - -1.3 823,484 + -0.4 823,485 - -0.2 823,488 + -3.7 823,489 - -0.2 823,489 - -3.5 823,511 + -4.1 823,511 + -4.3 823,511 + -4.0 823,511 + -4.8 823,515 + -3.4 823,515 + -4.1 823,516 - -1.1 823,561 + -2.2 823,561 + -1.2 823,588 + -2.7 823,588 + +0.4 823,698 - argC MCAODC_04085 0.19 -0.8 823,716 + argC MCAODC_04085 0.20 -1.7 823,736 - argC MCAODC_04085 0.22 -4.0 823,785 + argC MCAODC_04085 0.27 -1.8 823,786 - argC MCAODC_04085 0.27 -0.0 823,837 - argC MCAODC_04085 0.33 -2.1 823,884 + argC MCAODC_04085 0.37 -1.9 823,909 - argC MCAODC_04085 0.40 -1.3 823,909 - argC MCAODC_04085 0.40 -1.5 823,941 + argC MCAODC_04085 0.43 -1.1 823,942 - argC MCAODC_04085 0.43 -3.2 823,942 - argC MCAODC_04085 0.43 -4.7 824,086 + argC MCAODC_04085 0.57 -2.7 824,092 - argC MCAODC_04085 0.58 -4.0 824,117 + argC MCAODC_04085 0.60 -2.0 824,155 - argC MCAODC_04085 0.64 -1.9 824,155 - argC MCAODC_04085 0.64 -2.7 824,166 - argC MCAODC_04085 0.65 -1.5 824,174 + argC MCAODC_04085 0.66 -0.2 824,175 - argC MCAODC_04085 0.66 -3.5 824,175 - argC MCAODC_04085 0.66 -0.4 824,175 - argC MCAODC_04085 0.66 -1.1 824,252 - argC MCAODC_04085 0.74 -1.2 824,262 + argC MCAODC_04085 0.75 -3.8 824,359 + argC MCAODC_04085 0.84 -3.5 824,360 - argC MCAODC_04085 0.85 -1.7 824,428 + -5.1 824,429 - -1.0 824,429 - -3.5 824,429 - -1.5 824,437 - -0.6 824,452 + -3.2 824,465 - -0.0 824,481 - -1.4
Or see this region's nucleotide sequence