Strain Fitness in Escherichia coli ECRC101 around MCAODC_04055
Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Glucose |
---|---|---|---|---|---|
remove | |||||
816,244 | + | araJ | MCAODC_04050 | 0.28 | -3.5 |
816,295 | + | araJ | MCAODC_04050 | 0.32 | +1.1 |
816,295 | + | araJ | MCAODC_04050 | 0.32 | +0.9 |
816,295 | + | araJ | MCAODC_04050 | 0.32 | +0.7 |
816,296 | - | araJ | MCAODC_04050 | 0.32 | +0.4 |
816,296 | - | araJ | MCAODC_04050 | 0.32 | -0.1 |
816,296 | - | araJ | MCAODC_04050 | 0.32 | -0.3 |
816,296 | - | araJ | MCAODC_04050 | 0.32 | +0.4 |
816,299 | - | araJ | MCAODC_04050 | 0.33 | +0.1 |
816,299 | - | araJ | MCAODC_04050 | 0.33 | +0.2 |
816,312 | - | araJ | MCAODC_04050 | 0.34 | -0.2 |
816,312 | - | araJ | MCAODC_04050 | 0.34 | -0.2 |
816,331 | - | araJ | MCAODC_04050 | 0.35 | +0.9 |
816,348 | - | araJ | MCAODC_04050 | 0.36 | -0.8 |
816,352 | - | araJ | MCAODC_04050 | 0.37 | +1.1 |
816,367 | + | araJ | MCAODC_04050 | 0.38 | +1.0 |
816,367 | + | araJ | MCAODC_04050 | 0.38 | -0.4 |
816,367 | + | araJ | MCAODC_04050 | 0.38 | -0.7 |
816,368 | - | araJ | MCAODC_04050 | 0.38 | -1.1 |
816,368 | - | araJ | MCAODC_04050 | 0.38 | +0.2 |
816,368 | - | araJ | MCAODC_04050 | 0.38 | +0.6 |
816,375 | + | araJ | MCAODC_04050 | 0.38 | -1.5 |
816,376 | - | araJ | MCAODC_04050 | 0.38 | -1.4 |
816,388 | + | araJ | MCAODC_04050 | 0.39 | +1.1 |
816,388 | + | araJ | MCAODC_04050 | 0.39 | -0.1 |
816,388 | + | araJ | MCAODC_04050 | 0.39 | -0.4 |
816,388 | + | araJ | MCAODC_04050 | 0.39 | +0.4 |
816,388 | + | araJ | MCAODC_04050 | 0.39 | +1.6 |
816,388 | + | araJ | MCAODC_04050 | 0.39 | +1.3 |
816,389 | - | araJ | MCAODC_04050 | 0.39 | +0.0 |
816,389 | - | araJ | MCAODC_04050 | 0.39 | +0.0 |
816,389 | - | araJ | MCAODC_04050 | 0.39 | +0.1 |
816,389 | - | araJ | MCAODC_04050 | 0.39 | +1.3 |
816,390 | + | araJ | MCAODC_04050 | 0.39 | +0.1 |
816,390 | + | araJ | MCAODC_04050 | 0.39 | -0.2 |
816,390 | + | araJ | MCAODC_04050 | 0.39 | -0.8 |
816,390 | + | araJ | MCAODC_04050 | 0.39 | +0.0 |
816,390 | + | araJ | MCAODC_04050 | 0.39 | +0.5 |
816,390 | + | araJ | MCAODC_04050 | 0.39 | +0.3 |
816,391 | - | araJ | MCAODC_04050 | 0.40 | -0.7 |
816,391 | - | araJ | MCAODC_04050 | 0.40 | -0.1 |
816,391 | - | araJ | MCAODC_04050 | 0.40 | -1.9 |
816,391 | - | araJ | MCAODC_04050 | 0.40 | -1.8 |
816,391 | - | araJ | MCAODC_04050 | 0.40 | -3.0 |
816,391 | - | araJ | MCAODC_04050 | 0.40 | +0.3 |
816,403 | + | araJ | MCAODC_04050 | 0.40 | +3.9 |
816,404 | - | araJ | MCAODC_04050 | 0.41 | +0.7 |
816,404 | - | araJ | MCAODC_04050 | 0.41 | -1.8 |
816,406 | + | araJ | MCAODC_04050 | 0.41 | -0.0 |
816,406 | + | araJ | MCAODC_04050 | 0.41 | +0.2 |
816,407 | - | araJ | MCAODC_04050 | 0.41 | -0.1 |
816,436 | + | araJ | MCAODC_04050 | 0.43 | -0.2 |
816,445 | + | araJ | MCAODC_04050 | 0.44 | +0.0 |
816,445 | + | araJ | MCAODC_04050 | 0.44 | +0.2 |
816,445 | + | araJ | MCAODC_04050 | 0.44 | +0.7 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | +0.4 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | +1.7 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | -1.3 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | +1.6 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | -0.3 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | -0.3 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | +1.2 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | +0.2 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | -0.3 |
816,454 | + | araJ | MCAODC_04050 | 0.44 | -1.0 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -0.1 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -0.4 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | +0.3 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -0.5 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -1.1 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -0.3 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | +0.3 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | +0.9 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -1.4 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | -3.5 |
816,455 | - | araJ | MCAODC_04050 | 0.44 | +0.4 |
816,458 | + | araJ | MCAODC_04050 | 0.45 | -1.9 |
816,458 | + | araJ | MCAODC_04050 | 0.45 | +0.4 |
816,458 | + | araJ | MCAODC_04050 | 0.45 | -2.0 |
816,459 | - | araJ | MCAODC_04050 | 0.45 | -0.2 |
816,459 | - | araJ | MCAODC_04050 | 0.45 | -2.8 |
816,459 | - | araJ | MCAODC_04050 | 0.45 | -0.3 |
816,493 | + | araJ | MCAODC_04050 | 0.47 | +1.1 |
816,493 | + | araJ | MCAODC_04050 | 0.47 | -1.1 |
816,493 | + | araJ | MCAODC_04050 | 0.47 | +0.3 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | +0.0 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | +0.2 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | -3.5 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | +1.4 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | +0.1 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | -1.8 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | +0.6 |
816,494 | - | araJ | MCAODC_04050 | 0.47 | +0.1 |
816,496 | + | araJ | MCAODC_04050 | 0.48 | -1.3 |
816,496 | + | araJ | MCAODC_04050 | 0.48 | +0.9 |
816,496 | + | araJ | MCAODC_04050 | 0.48 | -0.1 |
816,496 | + | araJ | MCAODC_04050 | 0.48 | +1.1 |
816,496 | + | araJ | MCAODC_04050 | 0.48 | -2.4 |
816,497 | - | araJ | MCAODC_04050 | 0.48 | -2.6 |
816,497 | - | araJ | MCAODC_04050 | 0.48 | -0.0 |
816,497 | - | araJ | MCAODC_04050 | 0.48 | +1.9 |
816,497 | - | araJ | MCAODC_04050 | 0.48 | +1.8 |
816,644 | + | araJ | MCAODC_04050 | 0.59 | -0.4 |
816,644 | + | araJ | MCAODC_04050 | 0.59 | -0.4 |
816,645 | - | araJ | MCAODC_04050 | 0.59 | -1.3 |
816,645 | - | araJ | MCAODC_04050 | 0.59 | +0.9 |
816,645 | - | araJ | MCAODC_04050 | 0.59 | +0.0 |
816,651 | - | araJ | MCAODC_04050 | 0.59 | +0.2 |
816,651 | - | araJ | MCAODC_04050 | 0.59 | +0.9 |
816,797 | + | araJ | MCAODC_04050 | 0.70 | -2.4 |
816,797 | + | araJ | MCAODC_04050 | 0.70 | +1.0 |
816,847 | - | araJ | MCAODC_04050 | 0.74 | -3.1 |
816,874 | + | araJ | MCAODC_04050 | 0.76 | -0.3 |
816,874 | + | araJ | MCAODC_04050 | 0.76 | -0.8 |
816,874 | + | araJ | MCAODC_04050 | 0.76 | -0.3 |
816,874 | + | araJ | MCAODC_04050 | 0.76 | +0.1 |
816,875 | - | araJ | MCAODC_04050 | 0.76 | +0.0 |
816,875 | - | araJ | MCAODC_04050 | 0.76 | +0.8 |
816,949 | + | araJ | MCAODC_04050 | 0.82 | -0.4 |
816,949 | + | araJ | MCAODC_04050 | 0.82 | -2.5 |
817,007 | + | araJ | MCAODC_04050 | 0.86 | +0.2 |
817,008 | - | araJ | MCAODC_04050 | 0.86 | -0.1 |
817,057 | - | -0.6 | |||
817,074 | + | +0.4 | |||
817,172 | + | +0.9 | |||
817,173 | - | +0.2 | |||
817,173 | - | -0.7 | |||
817,226 | + | -0.5 | |||
817,226 | + | -0.1 | |||
817,226 | + | -0.2 | |||
817,227 | - | -0.6 | |||
817,227 | - | +1.6 | |||
817,247 | + | +0.1 | |||
817,247 | + | -0.2 | |||
817,247 | + | -1.3 | |||
817,248 | - | -0.7 | |||
817,248 | - | -1.8 | |||
817,263 | + | +0.6 | |||
817,264 | - | -0.0 | |||
817,264 | - | +0.7 | |||
817,313 | - | +1.5 | |||
817,355 | + | abgB | MCAODC_04055 | 0.11 | -0.3 |
817,460 | - | abgB | MCAODC_04055 | 0.20 | -0.4 |
817,502 | + | abgB | MCAODC_04055 | 0.23 | +1.3 |
817,503 | - | abgB | MCAODC_04055 | 0.23 | -0.7 |
817,503 | - | abgB | MCAODC_04055 | 0.23 | -1.2 |
817,505 | + | abgB | MCAODC_04055 | 0.24 | +0.0 |
817,505 | + | abgB | MCAODC_04055 | 0.24 | +0.3 |
817,505 | + | abgB | MCAODC_04055 | 0.24 | -0.3 |
817,506 | - | abgB | MCAODC_04055 | 0.24 | +0.6 |
817,508 | + | abgB | MCAODC_04055 | 0.24 | -0.6 |
817,509 | - | abgB | MCAODC_04055 | 0.24 | +0.2 |
817,509 | - | abgB | MCAODC_04055 | 0.24 | +1.4 |
817,509 | - | abgB | MCAODC_04055 | 0.24 | +0.7 |
817,509 | - | abgB | MCAODC_04055 | 0.24 | +0.7 |
817,516 | + | abgB | MCAODC_04055 | 0.25 | +0.4 |
817,523 | - | abgB | MCAODC_04055 | 0.25 | +1.7 |
817,532 | - | abgB | MCAODC_04055 | 0.26 | +0.4 |
817,700 | - | abgB | MCAODC_04055 | 0.40 | -0.4 |
817,704 | - | abgB | MCAODC_04055 | 0.41 | -0.8 |
817,749 | - | abgB | MCAODC_04055 | 0.45 | -3.4 |
817,762 | + | abgB | MCAODC_04055 | 0.46 | -0.5 |
817,762 | + | abgB | MCAODC_04055 | 0.46 | -0.4 |
817,762 | + | abgB | MCAODC_04055 | 0.46 | -0.3 |
817,763 | - | abgB | MCAODC_04055 | 0.46 | +1.8 |
817,763 | - | abgB | MCAODC_04055 | 0.46 | +1.2 |
817,763 | - | abgB | MCAODC_04055 | 0.46 | +0.4 |
817,775 | + | abgB | MCAODC_04055 | 0.47 | +0.0 |
817,775 | + | abgB | MCAODC_04055 | 0.47 | +0.1 |
817,775 | + | abgB | MCAODC_04055 | 0.47 | -2.2 |
817,834 | + | abgB | MCAODC_04055 | 0.52 | +0.5 |
817,835 | - | abgB | MCAODC_04055 | 0.52 | -2.7 |
817,835 | - | abgB | MCAODC_04055 | 0.52 | +0.3 |
817,835 | - | abgB | MCAODC_04055 | 0.52 | +0.4 |
817,837 | + | abgB | MCAODC_04055 | 0.52 | -0.1 |
817,838 | - | abgB | MCAODC_04055 | 0.52 | +1.7 |
817,838 | - | abgB | MCAODC_04055 | 0.52 | +0.7 |
817,882 | - | abgB | MCAODC_04055 | 0.56 | +0.8 |
817,912 | + | abgB | MCAODC_04055 | 0.59 | -0.2 |
817,912 | + | abgB | MCAODC_04055 | 0.59 | +1.0 |
817,912 | + | abgB | MCAODC_04055 | 0.59 | -0.5 |
817,913 | - | abgB | MCAODC_04055 | 0.59 | +1.2 |
817,913 | - | abgB | MCAODC_04055 | 0.59 | -0.8 |
817,963 | + | abgB | MCAODC_04055 | 0.63 | -0.3 |
817,984 | + | abgB | MCAODC_04055 | 0.65 | +0.6 |
818,011 | + | abgB | MCAODC_04055 | 0.67 | +1.1 |
818,011 | + | abgB | MCAODC_04055 | 0.67 | +0.7 |
818,012 | - | abgB | MCAODC_04055 | 0.67 | +1.7 |
818,018 | + | abgB | MCAODC_04055 | 0.68 | +0.7 |
818,018 | + | abgB | MCAODC_04055 | 0.68 | -1.9 |
818,019 | - | abgB | MCAODC_04055 | 0.68 | +0.8 |
818,019 | - | abgB | MCAODC_04055 | 0.68 | +1.1 |
818,019 | - | abgB | MCAODC_04055 | 0.68 | -0.7 |
818,019 | - | abgB | MCAODC_04055 | 0.68 | -1.4 |
818,029 | + | abgB | MCAODC_04055 | 0.69 | -2.4 |
818,053 | - | abgB | MCAODC_04055 | 0.71 | -3.4 |
818,073 | - | abgB | MCAODC_04055 | 0.72 | +1.6 |
818,080 | + | abgB | MCAODC_04055 | 0.73 | -0.4 |
818,081 | - | abgB | MCAODC_04055 | 0.73 | +0.1 |
818,108 | + | abgB | MCAODC_04055 | 0.75 | +1.0 |
818,123 | - | abgB | MCAODC_04055 | 0.77 | +0.1 |
818,143 | + | abgB | MCAODC_04055 | 0.78 | +1.0 |
818,144 | - | abgB | MCAODC_04055 | 0.78 | -1.6 |
818,151 | + | abgB | MCAODC_04055 | 0.79 | -1.0 |
818,188 | + | abgB | MCAODC_04055 | 0.82 | +1.2 |
818,189 | - | abgB | MCAODC_04055 | 0.82 | +0.1 |
818,189 | - | abgB | MCAODC_04055 | 0.82 | +0.6 |
818,213 | + | abgB | MCAODC_04055 | 0.84 | -0.2 |
818,214 | - | abgB | MCAODC_04055 | 0.84 | -2.0 |
818,252 | + | abgB | MCAODC_04055 | 0.88 | -2.8 |
818,253 | - | abgB | MCAODC_04055 | 0.88 | +0.7 |
818,253 | - | abgB | MCAODC_04055 | 0.88 | +0.0 |
818,260 | - | abgB | MCAODC_04055 | 0.88 | +0.8 |
818,302 | + | -0.3 | |||
818,313 | - | +0.6 | |||
818,313 | - | -0.2 | |||
818,313 | - | +0.2 | |||
818,313 | - | -0.5 | |||
818,313 | - | -1.9 | |||
818,381 | - | -0.9 | |||
818,381 | - | +0.0 | |||
818,383 | - | +0.9 | |||
818,416 | + | +0.5 | |||
818,418 | + | -1.4 | |||
818,427 | + | -0.3 | |||
818,442 | - | +0.2 | |||
818,586 | + | -1.9 | |||
818,587 | - | -0.6 | |||
818,633 | + | +1.9 | |||
818,704 | + | -1.6 | |||
818,715 | - | +1.8 | |||
818,753 | + | +3.4 | |||
818,753 | + | +0.4 | |||
818,756 | + | -1.0 | |||
818,759 | + | +0.6 | |||
818,759 | + | +0.8 | |||
818,760 | - | -0.4 | |||
818,914 | - | sthA | MCAODC_04060 | 0.13 | -2.0 |
818,915 | + | sthA | MCAODC_04060 | 0.14 | -3.0 |
818,915 | + | sthA | MCAODC_04060 | 0.14 | -0.6 |
818,915 | + | sthA | MCAODC_04060 | 0.14 | +1.6 |
818,916 | - | sthA | MCAODC_04060 | 0.14 | -0.8 |
818,916 | - | sthA | MCAODC_04060 | 0.14 | -1.5 |
818,916 | - | sthA | MCAODC_04060 | 0.14 | +2.0 |
818,936 | + | sthA | MCAODC_04060 | 0.15 | -0.8 |
818,936 | + | sthA | MCAODC_04060 | 0.15 | -0.1 |
818,936 | + | sthA | MCAODC_04060 | 0.15 | -1.6 |
818,937 | - | sthA | MCAODC_04060 | 0.15 | +1.5 |
818,938 | + | sthA | MCAODC_04060 | 0.15 | +0.1 |
818,938 | + | sthA | MCAODC_04060 | 0.15 | -1.7 |
818,938 | + | sthA | MCAODC_04060 | 0.15 | -1.8 |
818,938 | + | sthA | MCAODC_04060 | 0.15 | -1.0 |
818,939 | - | sthA | MCAODC_04060 | 0.15 | +0.9 |
818,939 | - | sthA | MCAODC_04060 | 0.15 | -0.7 |
818,939 | - | sthA | MCAODC_04060 | 0.15 | -0.4 |
819,037 | + | sthA | MCAODC_04060 | 0.22 | -1.2 |
819,038 | - | sthA | MCAODC_04060 | 0.22 | -0.6 |
819,046 | - | sthA | MCAODC_04060 | 0.23 | +0.0 |
819,093 | + | sthA | MCAODC_04060 | 0.26 | -0.4 |
819,094 | - | sthA | MCAODC_04060 | 0.26 | -0.4 |
819,176 | - | sthA | MCAODC_04060 | 0.32 | +2.0 |
819,260 | + | sthA | MCAODC_04060 | 0.38 | -0.2 |
819,260 | + | sthA | MCAODC_04060 | 0.38 | -2.0 |
819,260 | + | sthA | MCAODC_04060 | 0.38 | +2.8 |
819,260 | + | sthA | MCAODC_04060 | 0.38 | -0.4 |
819,260 | + | sthA | MCAODC_04060 | 0.38 | +0.0 |
819,261 | - | sthA | MCAODC_04060 | 0.38 | -3.0 |
819,264 | + | sthA | MCAODC_04060 | 0.38 | -1.1 |
819,264 | + | sthA | MCAODC_04060 | 0.38 | -0.4 |
819,264 | + | sthA | MCAODC_04060 | 0.38 | -1.1 |
819,264 | + | sthA | MCAODC_04060 | 0.38 | -0.6 |
819,265 | - | sthA | MCAODC_04060 | 0.39 | +0.0 |
819,265 | - | sthA | MCAODC_04060 | 0.39 | -2.3 |
819,265 | - | sthA | MCAODC_04060 | 0.39 | +1.4 |
819,268 | + | sthA | MCAODC_04060 | 0.39 | +1.5 |
819,268 | + | sthA | MCAODC_04060 | 0.39 | -1.0 |
819,268 | + | sthA | MCAODC_04060 | 0.39 | +1.9 |
819,269 | - | sthA | MCAODC_04060 | 0.39 | -1.4 |
819,269 | - | sthA | MCAODC_04060 | 0.39 | +1.0 |
819,295 | + | sthA | MCAODC_04060 | 0.41 | -2.3 |
819,324 | - | sthA | MCAODC_04060 | 0.43 | -1.9 |
Or see this region's nucleotide sequence