Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trmA and yijD are separated by 39 nucleotides yijD and fabR overlap by 1 nucleotides fabR and araJ are separated by 49 nucleotides
MCAODC_04035: trmA - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 813,617 to 814,717
trmA
MCAODC_04040: yijD - YijD family membrane protein, at 814,757 to 815,116
yijD
MCAODC_04045: fabR - HTH-type transcriptional repressor FabR, at 815,116 to 815,820
fabR
MCAODC_04050: araJ - MFS transporter, at 815,870 to 817,186
araJ
Position (kb) 814
815
816 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 813.795 kb on - strand, within trmA at 813.795 kb on - strand, within trmA at 813.904 kb on + strand, within trmA at 813.962 kb on - strand, within trmA at 813.987 kb on - strand, within trmA at 813.991 kb on + strand, within trmA at 813.992 kb on - strand, within trmA at 814.115 kb on + strand, within trmA at 814.115 kb on + strand, within trmA at 814.116 kb on - strand, within trmA at 814.116 kb on - strand, within trmA at 814.157 kb on + strand, within trmA at 814.158 kb on - strand, within trmA at 814.158 kb on - strand, within trmA at 814.158 kb on - strand, within trmA at 814.167 kb on + strand, within trmA at 814.233 kb on + strand, within trmA at 814.234 kb on - strand, within trmA at 814.257 kb on + strand, within trmA at 814.258 kb on - strand, within trmA at 814.268 kb on + strand, within trmA at 814.268 kb on + strand, within trmA at 814.269 kb on - strand, within trmA at 814.269 kb on - strand, within trmA at 814.365 kb on - strand, within trmA at 814.395 kb on + strand, within trmA at 814.395 kb on + strand, within trmA at 814.403 kb on - strand, within trmA at 814.409 kb on - strand, within trmA at 814.457 kb on - strand, within trmA at 814.479 kb on + strand, within trmA at 814.479 kb on + strand, within trmA at 814.479 kb on + strand, within trmA at 814.563 kb on - strand, within trmA at 814.570 kb on + strand, within trmA at 814.570 kb on + strand, within trmA at 814.570 kb on + strand, within trmA at 814.570 kb on + strand, within trmA at 814.570 kb on + strand, within trmA at 814.570 kb on + strand, within trmA at 814.571 kb on - strand, within trmA at 814.571 kb on - strand, within trmA at 814.577 kb on + strand, within trmA at 814.577 kb on + strand, within trmA at 814.577 kb on + strand, within trmA at 814.577 kb on + strand, within trmA at 814.577 kb on + strand, within trmA at 814.577 kb on + strand, within trmA at 814.577 kb on + strand, within trmA at 814.578 kb on - strand, within trmA at 814.578 kb on - strand, within trmA at 814.578 kb on - strand, within trmA at 814.578 kb on - strand, within trmA at 814.578 kb on - strand, within trmA at 814.578 kb on - strand, within trmA at 814.579 kb on + strand, within trmA at 814.580 kb on - strand, within trmA at 814.580 kb on - strand, within trmA at 814.624 kb on - strand at 814.624 kb on - strand at 814.698 kb on + strand at 814.698 kb on + strand at 814.698 kb on + strand at 814.699 kb on - strand at 814.699 kb on - strand at 814.715 kb on + strand at 814.715 kb on + strand at 814.758 kb on + strand at 814.777 kb on + strand at 814.813 kb on + strand, within yijD at 814.813 kb on + strand, within yijD at 814.814 kb on - strand, within yijD at 814.826 kb on + strand, within yijD at 814.843 kb on + strand, within yijD at 814.874 kb on + strand, within yijD at 814.884 kb on + strand, within yijD at 814.885 kb on - strand, within yijD at 814.892 kb on + strand, within yijD at 814.957 kb on - strand, within yijD at 814.957 kb on - strand, within yijD at 814.957 kb on - strand, within yijD at 814.974 kb on + strand, within yijD at 814.974 kb on + strand, within yijD at 814.997 kb on - strand, within yijD at 815.029 kb on + strand, within yijD at 815.047 kb on + strand, within yijD at 815.048 kb on - strand, within yijD at 815.054 kb on - strand, within yijD at 815.060 kb on + strand, within yijD at 815.089 kb on + strand at 815.089 kb on + strand at 815.089 kb on + strand at 815.090 kb on - strand at 815.090 kb on - strand at 815.090 kb on - strand at 815.090 kb on - strand at 815.095 kb on + strand at 815.095 kb on + strand at 815.096 kb on - strand at 815.096 kb on - strand at 815.118 kb on - strand at 815.143 kb on - strand at 815.178 kb on - strand at 815.180 kb on + strand at 815.180 kb on + strand at 815.180 kb on + strand at 815.180 kb on + strand at 815.180 kb on + strand at 815.181 kb on - strand at 815.227 kb on + strand, within fabR at 815.228 kb on - strand, within fabR at 815.351 kb on + strand, within fabR at 815.437 kb on + strand, within fabR at 815.437 kb on + strand, within fabR at 815.438 kb on - strand, within fabR at 815.438 kb on - strand, within fabR at 815.438 kb on - strand, within fabR at 815.464 kb on - strand, within fabR at 815.478 kb on + strand, within fabR at 815.479 kb on - strand, within fabR at 815.479 kb on - strand, within fabR at 815.554 kb on + strand, within fabR at 815.555 kb on - strand, within fabR at 815.561 kb on - strand, within fabR at 815.600 kb on - strand, within fabR at 815.695 kb on + strand, within fabR at 815.696 kb on - strand, within fabR at 815.696 kb on - strand, within fabR at 815.696 kb on - strand, within fabR at 815.696 kb on - strand, within fabR at 815.755 kb on + strand at 815.790 kb on + strand at 815.802 kb on + strand at 815.802 kb on + strand at 815.802 kb on + strand at 815.803 kb on - strand at 815.803 kb on - strand at 815.805 kb on - strand at 815.820 kb on + strand at 815.820 kb on + strand at 815.821 kb on - strand at 815.836 kb on + strand at 815.860 kb on + strand at 815.867 kb on + strand at 815.867 kb on + strand at 815.867 kb on + strand at 815.868 kb on - strand at 815.871 kb on + strand at 815.897 kb on + strand at 815.897 kb on + strand at 815.901 kb on + strand at 815.901 kb on + strand at 815.902 kb on - strand at 815.902 kb on - strand at 815.966 kb on - strand at 816.034 kb on + strand, within araJ at 816.035 kb on - strand, within araJ at 816.035 kb on - strand, within araJ at 816.037 kb on - strand, within araJ at 816.037 kb on - strand, within araJ
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 813,795 - trmA MCAODC_04035 0.16 +1.3 813,795 - trmA MCAODC_04035 0.16 -0.3 813,904 + trmA MCAODC_04035 0.26 +1.0 813,962 - trmA MCAODC_04035 0.31 -1.7 813,987 - trmA MCAODC_04035 0.34 +0.2 813,991 + trmA MCAODC_04035 0.34 -0.7 813,992 - trmA MCAODC_04035 0.34 +2.9 814,115 + trmA MCAODC_04035 0.45 +3.9 814,115 + trmA MCAODC_04035 0.45 +0.4 814,116 - trmA MCAODC_04035 0.45 -0.5 814,116 - trmA MCAODC_04035 0.45 +0.7 814,157 + trmA MCAODC_04035 0.49 +0.4 814,158 - trmA MCAODC_04035 0.49 -1.1 814,158 - trmA MCAODC_04035 0.49 +0.5 814,158 - trmA MCAODC_04035 0.49 -0.1 814,167 + trmA MCAODC_04035 0.50 +1.4 814,233 + trmA MCAODC_04035 0.56 +0.9 814,234 - trmA MCAODC_04035 0.56 -4.1 814,257 + trmA MCAODC_04035 0.58 +1.0 814,258 - trmA MCAODC_04035 0.58 +0.6 814,268 + trmA MCAODC_04035 0.59 -0.7 814,268 + trmA MCAODC_04035 0.59 -0.7 814,269 - trmA MCAODC_04035 0.59 -1.8 814,269 - trmA MCAODC_04035 0.59 +0.9 814,365 - trmA MCAODC_04035 0.68 -0.7 814,395 + trmA MCAODC_04035 0.71 +0.1 814,395 + trmA MCAODC_04035 0.71 -0.5 814,403 - trmA MCAODC_04035 0.71 +2.4 814,409 - trmA MCAODC_04035 0.72 -0.2 814,457 - trmA MCAODC_04035 0.76 +0.5 814,479 + trmA MCAODC_04035 0.78 +0.2 814,479 + trmA MCAODC_04035 0.78 -0.9 814,479 + trmA MCAODC_04035 0.78 +0.5 814,563 - trmA MCAODC_04035 0.86 -0.6 814,570 + trmA MCAODC_04035 0.87 +0.8 814,570 + trmA MCAODC_04035 0.87 +0.4 814,570 + trmA MCAODC_04035 0.87 -0.3 814,570 + trmA MCAODC_04035 0.87 +0.8 814,570 + trmA MCAODC_04035 0.87 -0.4 814,570 + trmA MCAODC_04035 0.87 -0.1 814,571 - trmA MCAODC_04035 0.87 +1.3 814,571 - trmA MCAODC_04035 0.87 -0.2 814,577 + trmA MCAODC_04035 0.87 -1.0 814,577 + trmA MCAODC_04035 0.87 +0.2 814,577 + trmA MCAODC_04035 0.87 +0.3 814,577 + trmA MCAODC_04035 0.87 +2.7 814,577 + trmA MCAODC_04035 0.87 +0.7 814,577 + trmA MCAODC_04035 0.87 -3.3 814,577 + trmA MCAODC_04035 0.87 -0.3 814,578 - trmA MCAODC_04035 0.87 -0.5 814,578 - trmA MCAODC_04035 0.87 +0.2 814,578 - trmA MCAODC_04035 0.87 -0.0 814,578 - trmA MCAODC_04035 0.87 -2.7 814,578 - trmA MCAODC_04035 0.87 -0.1 814,578 - trmA MCAODC_04035 0.87 -0.7 814,579 + trmA MCAODC_04035 0.87 +0.1 814,580 - trmA MCAODC_04035 0.87 +0.5 814,580 - trmA MCAODC_04035 0.87 -0.1 814,624 - +0.6 814,624 - +0.4 814,698 + +2.1 814,698 + -1.5 814,698 + +0.2 814,699 - +2.6 814,699 - -1.3 814,715 + +1.1 814,715 + +0.1 814,758 + -1.5 814,777 + +0.0 814,813 + yijD MCAODC_04040 0.16 +0.7 814,813 + yijD MCAODC_04040 0.16 -1.3 814,814 - yijD MCAODC_04040 0.16 +0.2 814,826 + yijD MCAODC_04040 0.19 +0.4 814,843 + yijD MCAODC_04040 0.24 +0.1 814,874 + yijD MCAODC_04040 0.33 -0.9 814,884 + yijD MCAODC_04040 0.35 +0.6 814,885 - yijD MCAODC_04040 0.36 +1.5 814,892 + yijD MCAODC_04040 0.38 -0.6 814,957 - yijD MCAODC_04040 0.56 +1.1 814,957 - yijD MCAODC_04040 0.56 +0.5 814,957 - yijD MCAODC_04040 0.56 +0.3 814,974 + yijD MCAODC_04040 0.60 -0.1 814,974 + yijD MCAODC_04040 0.60 -0.3 814,997 - yijD MCAODC_04040 0.67 +1.1 815,029 + yijD MCAODC_04040 0.76 -0.4 815,047 + yijD MCAODC_04040 0.81 -1.1 815,048 - yijD MCAODC_04040 0.81 -0.2 815,054 - yijD MCAODC_04040 0.82 -0.1 815,060 + yijD MCAODC_04040 0.84 +1.3 815,089 + -0.0 815,089 + +0.8 815,089 + -0.4 815,090 - -3.0 815,090 - -1.8 815,090 - -1.1 815,090 - -0.2 815,095 + -0.7 815,095 + -1.7 815,096 - -2.4 815,096 - +1.6 815,118 - +0.8 815,143 - -1.1 815,178 - -1.5 815,180 + -0.3 815,180 + +0.3 815,180 + +0.4 815,180 + -0.2 815,180 + +0.4 815,181 - +0.1 815,227 + fabR MCAODC_04045 0.16 +0.2 815,228 - fabR MCAODC_04045 0.16 -0.0 815,351 + fabR MCAODC_04045 0.33 -0.3 815,437 + fabR MCAODC_04045 0.46 +0.5 815,437 + fabR MCAODC_04045 0.46 +0.4 815,438 - fabR MCAODC_04045 0.46 +0.8 815,438 - fabR MCAODC_04045 0.46 +0.2 815,438 - fabR MCAODC_04045 0.46 -0.2 815,464 - fabR MCAODC_04045 0.49 +0.0 815,478 + fabR MCAODC_04045 0.51 -0.2 815,479 - fabR MCAODC_04045 0.51 -2.3 815,479 - fabR MCAODC_04045 0.51 +1.1 815,554 + fabR MCAODC_04045 0.62 +1.4 815,555 - fabR MCAODC_04045 0.62 -2.2 815,561 - fabR MCAODC_04045 0.63 -0.4 815,600 - fabR MCAODC_04045 0.69 -1.0 815,695 + fabR MCAODC_04045 0.82 -1.2 815,696 - fabR MCAODC_04045 0.82 +1.6 815,696 - fabR MCAODC_04045 0.82 +0.2 815,696 - fabR MCAODC_04045 0.82 +0.5 815,696 - fabR MCAODC_04045 0.82 +0.3 815,755 + +0.1 815,790 + -0.6 815,802 + +0.5 815,802 + -1.0 815,802 + +0.3 815,803 - -0.0 815,803 - -0.1 815,805 - +0.1 815,820 + -3.7 815,820 + -0.6 815,821 - -0.3 815,836 + -2.2 815,860 + +0.9 815,867 + -1.7 815,867 + -0.7 815,867 + -0.3 815,868 - -1.0 815,871 + -0.5 815,897 + +0.1 815,897 + +0.1 815,901 + -0.2 815,901 + +0.0 815,902 - +1.4 815,902 - -0.3 815,966 - +0.6 816,034 + araJ MCAODC_04050 0.12 -0.7 816,035 - araJ MCAODC_04050 0.13 -0.2 816,035 - araJ MCAODC_04050 0.13 +0.1 816,037 - araJ MCAODC_04050 0.13 -0.5 816,037 - araJ MCAODC_04050 0.13 -0.4
Or see this region's nucleotide sequence