Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_03650 and MCAODC_03655 overlap by 4 nucleotides MCAODC_03655 and yjbE are separated by 113 nucleotides yjbE and pgi are separated by 512 nucleotides
MCAODC_03650: MCAODC_03650 - Uncharacterized protein YjbG, at 734,003 to 734,740
_03650
MCAODC_03655: MCAODC_03655 - Lipoprotein yjbF, at 734,737 to 735,375
_03655
MCAODC_03660: yjbE - Uncharacterized protein YjbE, at 735,489 to 735,731
yjbE
MCAODC_03675: pgi - glucose-6-phosphate isomerase, at 736,244 to 737,893
pgi
Position (kb) 735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.612 kb on + strand, within MCAODC_03650 at 734.613 kb on - strand, within MCAODC_03650 at 734.725 kb on + strand at 734.726 kb on - strand at 734.735 kb on - strand at 734.780 kb on + strand at 734.781 kb on - strand at 734.795 kb on + strand at 734.796 kb on - strand at 734.916 kb on + strand, within MCAODC_03655 at 734.968 kb on + strand, within MCAODC_03655 at 735.037 kb on - strand, within MCAODC_03655 at 735.060 kb on + strand, within MCAODC_03655 at 735.060 kb on + strand, within MCAODC_03655 at 735.060 kb on + strand, within MCAODC_03655 at 735.207 kb on + strand, within MCAODC_03655 at 735.218 kb on + strand, within MCAODC_03655 at 735.218 kb on + strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.237 kb on + strand, within MCAODC_03655 at 735.238 kb on - strand, within MCAODC_03655 at 735.238 kb on - strand, within MCAODC_03655 at 735.337 kb on + strand at 735.340 kb on + strand at 735.341 kb on - strand at 735.341 kb on - strand at 735.341 kb on - strand at 735.352 kb on - strand at 735.400 kb on - strand at 735.400 kb on - strand at 735.424 kb on + strand at 735.424 kb on + strand at 735.425 kb on - strand at 735.436 kb on + strand at 735.436 kb on + strand at 735.436 kb on + strand at 735.437 kb on - strand at 735.443 kb on - strand at 735.478 kb on + strand at 735.478 kb on + strand at 735.479 kb on - strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.487 kb on + strand at 735.488 kb on - strand at 735.488 kb on - strand at 735.490 kb on + strand at 735.491 kb on - strand at 735.530 kb on + strand, within yjbE at 735.530 kb on + strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.661 kb on - strand, within yjbE at 735.715 kb on + strand at 735.796 kb on - strand at 736.057 kb on + strand at 736.083 kb on + strand at 736.096 kb on + strand at 736.097 kb on - strand at 736.097 kb on - strand at 736.103 kb on + strand at 736.104 kb on - strand at 736.121 kb on + strand at 736.121 kb on + strand at 736.121 kb on + strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.125 kb on + strand at 736.125 kb on + strand at 736.151 kb on - strand at 736.215 kb on + strand at 736.215 kb on + strand at 736.219 kb on + strand at 736.261 kb on + strand at 736.428 kb on + strand, within pgi at 736.429 kb on - strand, within pgi at 736.481 kb on - strand, within pgi at 736.481 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.591 kb on + strand, within pgi at 736.627 kb on + strand, within pgi at 736.728 kb on + strand, within pgi
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 734,612 + MCAODC_03650 0.83 -0.5 734,613 - MCAODC_03650 0.83 -0.1 734,725 + +1.0 734,726 - -0.2 734,735 - +0.4 734,780 + -0.0 734,781 - -1.0 734,795 + -0.5 734,796 - -0.5 734,916 + MCAODC_03655 0.28 +1.1 734,968 + MCAODC_03655 0.36 -0.4 735,037 - MCAODC_03655 0.47 +1.2 735,060 + MCAODC_03655 0.51 -0.0 735,060 + MCAODC_03655 0.51 +0.4 735,060 + MCAODC_03655 0.51 +0.9 735,207 + MCAODC_03655 0.74 -0.4 735,218 + MCAODC_03655 0.75 +0.6 735,218 + MCAODC_03655 0.75 -0.7 735,219 - MCAODC_03655 0.75 -0.4 735,219 - MCAODC_03655 0.75 +0.1 735,219 - MCAODC_03655 0.75 -0.5 735,219 - MCAODC_03655 0.75 +0.4 735,219 - MCAODC_03655 0.75 +0.5 735,237 + MCAODC_03655 0.78 -1.9 735,238 - MCAODC_03655 0.78 +0.4 735,238 - MCAODC_03655 0.78 -0.4 735,337 + -0.5 735,340 + -2.3 735,341 - +0.5 735,341 - -1.3 735,341 - +1.7 735,352 - +0.8 735,400 - -0.4 735,400 - +0.7 735,424 + +1.1 735,424 + +0.2 735,425 - +0.7 735,436 + +1.7 735,436 + +0.4 735,436 + -1.2 735,437 - -0.2 735,443 - +0.5 735,478 + +0.2 735,478 + -1.9 735,479 - -1.1 735,482 + -0.5 735,482 + -1.0 735,482 + -1.3 735,482 + -0.5 735,483 - -2.3 735,483 - -0.6 735,483 - -0.7 735,483 - +0.3 735,483 - +0.4 735,483 - +0.2 735,483 - -1.0 735,483 - +1.8 735,483 - +0.2 735,483 - +0.6 735,487 + +1.3 735,488 - +0.4 735,488 - +0.3 735,490 + +2.1 735,491 - +0.8 735,530 + yjbE MCAODC_03660 0.17 +1.0 735,530 + yjbE MCAODC_03660 0.17 +0.5 735,531 - yjbE MCAODC_03660 0.17 -0.2 735,531 - yjbE MCAODC_03660 0.17 -1.3 735,531 - yjbE MCAODC_03660 0.17 +1.7 735,661 - yjbE MCAODC_03660 0.71 -0.8 735,715 + -0.8 735,796 - +0.2 736,057 + -3.5 736,083 + -0.2 736,096 + +0.9 736,097 - +0.0 736,097 - +0.2 736,103 + +0.4 736,104 - +0.1 736,121 + -0.3 736,121 + -0.2 736,121 + -0.3 736,122 - -0.0 736,122 - +1.2 736,122 - +0.3 736,122 - -0.4 736,122 - +0.8 736,125 + +0.3 736,125 + +1.4 736,151 - -0.1 736,215 + +0.3 736,215 + -0.4 736,219 + -3.0 736,261 + -2.5 736,428 + pgi MCAODC_03675 0.11 -2.7 736,429 - pgi MCAODC_03675 0.11 -0.8 736,481 - pgi MCAODC_03675 0.14 -2.6 736,481 - pgi MCAODC_03675 0.14 -0.6 736,528 - pgi MCAODC_03675 0.17 -1.6 736,528 - pgi MCAODC_03675 0.17 -1.6 736,528 - pgi MCAODC_03675 0.17 -1.0 736,528 - pgi MCAODC_03675 0.17 -0.9 736,528 - pgi MCAODC_03675 0.17 -1.3 736,591 + pgi MCAODC_03675 0.21 -1.6 736,627 + pgi MCAODC_03675 0.23 -1.1 736,728 + pgi MCAODC_03675 0.29 -2.8
Or see this region's nucleotide sequence