Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt melA and melR are separated by 282 nucleotides melR and adiA are separated by 198 nucleotides
MCAODC_03050: melA - alpha-galactosidase, at 616,350 to 617,705
melA
MCAODC_03055: melR - transcriptional regulator MelR, at 617,988 to 618,896
melR
MCAODC_03060: adiA - arginine decarboxylase, at 619,095 to 621,362
adiA
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 617.017 kb on + strand, within melA at 617.018 kb on - strand, within melA at 617.018 kb on - strand, within melA at 617.050 kb on + strand, within melA at 617.050 kb on + strand, within melA at 617.097 kb on - strand, within melA at 617.105 kb on + strand, within melA at 617.208 kb on - strand, within melA at 617.224 kb on + strand, within melA at 617.224 kb on + strand, within melA at 617.224 kb on + strand, within melA at 617.224 kb on + strand, within melA at 617.224 kb on + strand, within melA at 617.225 kb on - strand, within melA at 617.225 kb on - strand, within melA at 617.225 kb on - strand, within melA at 617.225 kb on - strand, within melA at 617.237 kb on + strand, within melA at 617.238 kb on - strand, within melA at 617.260 kb on + strand, within melA at 617.260 kb on + strand, within melA at 617.260 kb on + strand, within melA at 617.260 kb on + strand, within melA at 617.261 kb on - strand, within melA at 617.261 kb on - strand, within melA at 617.261 kb on - strand, within melA at 617.261 kb on - strand, within melA at 617.261 kb on - strand, within melA at 617.261 kb on - strand, within melA at 617.261 kb on - strand, within melA at 617.330 kb on + strand, within melA at 617.330 kb on + strand, within melA at 617.331 kb on - strand, within melA at 617.334 kb on + strand, within melA at 617.335 kb on - strand, within melA at 617.345 kb on + strand, within melA at 617.345 kb on + strand, within melA at 617.345 kb on + strand, within melA at 617.345 kb on + strand, within melA at 617.346 kb on - strand, within melA at 617.346 kb on - strand, within melA at 617.346 kb on - strand, within melA at 617.349 kb on - strand, within melA at 617.349 kb on - strand, within melA at 617.366 kb on + strand, within melA at 617.366 kb on + strand, within melA at 617.399 kb on + strand, within melA at 617.478 kb on + strand, within melA at 617.543 kb on + strand, within melA at 617.543 kb on + strand, within melA at 617.543 kb on + strand, within melA at 617.555 kb on + strand, within melA at 617.555 kb on + strand, within melA at 617.556 kb on - strand, within melA at 617.685 kb on - strand at 617.685 kb on - strand at 617.730 kb on - strand at 617.957 kb on - strand at 617.957 kb on - strand at 617.957 kb on - strand at 617.993 kb on + strand at 617.993 kb on + strand at 617.993 kb on + strand at 617.993 kb on + strand at 617.994 kb on - strand at 617.994 kb on - strand at 617.994 kb on - strand at 617.994 kb on - strand at 617.999 kb on + strand at 617.999 kb on + strand at 617.999 kb on + strand at 617.999 kb on + strand at 618.000 kb on - strand at 618.000 kb on - strand at 618.000 kb on - strand at 618.000 kb on - strand at 618.000 kb on - strand at 618.005 kb on + strand at 618.005 kb on + strand at 618.005 kb on + strand at 618.005 kb on + strand at 618.005 kb on + strand at 618.006 kb on - strand at 618.006 kb on - strand at 618.006 kb on - strand at 618.006 kb on - strand at 618.006 kb on - strand at 618.095 kb on + strand, within melR at 618.096 kb on - strand, within melR at 618.224 kb on + strand, within melR at 618.225 kb on - strand, within melR at 618.365 kb on + strand, within melR at 618.365 kb on + strand, within melR at 618.412 kb on + strand, within melR at 618.413 kb on - strand, within melR at 618.479 kb on + strand, within melR at 618.561 kb on + strand, within melR at 618.562 kb on - strand, within melR at 618.562 kb on - strand, within melR at 618.562 kb on - strand, within melR at 618.597 kb on + strand, within melR at 618.644 kb on + strand, within melR at 618.702 kb on + strand, within melR at 618.702 kb on + strand, within melR at 618.702 kb on + strand, within melR at 618.703 kb on - strand, within melR at 618.703 kb on - strand, within melR at 618.761 kb on + strand, within melR at 618.828 kb on + strand at 618.828 kb on + strand at 618.828 kb on + strand at 618.828 kb on + strand at 618.828 kb on + strand at 618.829 kb on - strand at 618.829 kb on - strand at 618.829 kb on - strand at 618.895 kb on - strand at 618.909 kb on + strand at 618.942 kb on + strand at 618.943 kb on - strand at 619.051 kb on + strand at 619.051 kb on + strand at 619.103 kb on - strand at 619.103 kb on - strand at 619.448 kb on + strand, within adiA at 619.449 kb on - strand, within adiA at 619.539 kb on + strand, within adiA at 619.557 kb on + strand, within adiA at 619.557 kb on + strand, within adiA at 619.557 kb on + strand, within adiA at 619.558 kb on - strand, within adiA at 619.558 kb on - strand, within adiA at 619.558 kb on - strand, within adiA at 619.623 kb on + strand, within adiA at 619.624 kb on - strand, within adiA at 619.632 kb on + strand, within adiA at 619.633 kb on - strand, within adiA at 619.633 kb on - strand, within adiA at 619.635 kb on + strand, within adiA at 619.636 kb on - strand, within adiA at 619.636 kb on - strand, within adiA at 619.636 kb on - strand, within adiA at 619.744 kb on + strand, within adiA at 619.782 kb on - strand, within adiA at 619.850 kb on + strand, within adiA at 619.850 kb on + strand, within adiA at 619.850 kb on + strand, within adiA at 619.851 kb on - strand, within adiA at 619.851 kb on - strand, within adiA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 617,017 + melA MCAODC_03050 0.49 -0.3 617,018 - melA MCAODC_03050 0.49 +0.3 617,018 - melA MCAODC_03050 0.49 +0.1 617,050 + melA MCAODC_03050 0.52 +1.2 617,050 + melA MCAODC_03050 0.52 +0.1 617,097 - melA MCAODC_03050 0.55 +1.5 617,105 + melA MCAODC_03050 0.56 +0.6 617,208 - melA MCAODC_03050 0.63 +1.0 617,224 + melA MCAODC_03050 0.64 +1.0 617,224 + melA MCAODC_03050 0.64 -1.2 617,224 + melA MCAODC_03050 0.64 +0.6 617,224 + melA MCAODC_03050 0.64 -1.7 617,224 + melA MCAODC_03050 0.64 -1.5 617,225 - melA MCAODC_03050 0.65 -0.2 617,225 - melA MCAODC_03050 0.65 -1.4 617,225 - melA MCAODC_03050 0.65 +0.4 617,225 - melA MCAODC_03050 0.65 +0.1 617,237 + melA MCAODC_03050 0.65 -0.6 617,238 - melA MCAODC_03050 0.65 +0.1 617,260 + melA MCAODC_03050 0.67 -0.8 617,260 + melA MCAODC_03050 0.67 +1.5 617,260 + melA MCAODC_03050 0.67 +0.1 617,260 + melA MCAODC_03050 0.67 +0.8 617,261 - melA MCAODC_03050 0.67 +0.2 617,261 - melA MCAODC_03050 0.67 -0.2 617,261 - melA MCAODC_03050 0.67 +1.4 617,261 - melA MCAODC_03050 0.67 +1.0 617,261 - melA MCAODC_03050 0.67 +1.4 617,261 - melA MCAODC_03050 0.67 -0.3 617,261 - melA MCAODC_03050 0.67 -2.1 617,330 + melA MCAODC_03050 0.72 -0.2 617,330 + melA MCAODC_03050 0.72 -1.1 617,331 - melA MCAODC_03050 0.72 +1.3 617,334 + melA MCAODC_03050 0.73 +0.2 617,335 - melA MCAODC_03050 0.73 +0.5 617,345 + melA MCAODC_03050 0.73 -0.8 617,345 + melA MCAODC_03050 0.73 -0.7 617,345 + melA MCAODC_03050 0.73 -0.1 617,345 + melA MCAODC_03050 0.73 +0.0 617,346 - melA MCAODC_03050 0.73 +1.1 617,346 - melA MCAODC_03050 0.73 +0.0 617,346 - melA MCAODC_03050 0.73 +0.4 617,349 - melA MCAODC_03050 0.74 -0.3 617,349 - melA MCAODC_03050 0.74 +0.1 617,366 + melA MCAODC_03050 0.75 -1.9 617,366 + melA MCAODC_03050 0.75 -0.5 617,399 + melA MCAODC_03050 0.77 -2.0 617,478 + melA MCAODC_03050 0.83 +0.8 617,543 + melA MCAODC_03050 0.88 -0.3 617,543 + melA MCAODC_03050 0.88 -1.5 617,543 + melA MCAODC_03050 0.88 +0.9 617,555 + melA MCAODC_03050 0.89 -1.0 617,555 + melA MCAODC_03050 0.89 +0.1 617,556 - melA MCAODC_03050 0.89 +0.5 617,685 - +1.5 617,685 - -1.1 617,730 - +0.4 617,957 - -2.4 617,957 - +1.5 617,957 - +1.2 617,993 + -0.1 617,993 + +0.1 617,993 + -3.3 617,993 + +0.7 617,994 - +0.1 617,994 - +0.4 617,994 - +1.1 617,994 - -0.5 617,999 + +1.0 617,999 + +1.3 617,999 + +0.9 617,999 + -2.5 618,000 - +0.6 618,000 - +0.1 618,000 - -0.2 618,000 - +1.3 618,000 - -0.1 618,005 + +1.1 618,005 + +1.2 618,005 + -2.6 618,005 + +0.0 618,005 + +0.9 618,006 - +0.5 618,006 - -0.1 618,006 - +0.1 618,006 - +0.4 618,006 - -0.2 618,095 + melR MCAODC_03055 0.12 +3.0 618,096 - melR MCAODC_03055 0.12 +1.6 618,224 + melR MCAODC_03055 0.26 +0.4 618,225 - melR MCAODC_03055 0.26 -1.2 618,365 + melR MCAODC_03055 0.41 -0.3 618,365 + melR MCAODC_03055 0.41 +0.2 618,412 + melR MCAODC_03055 0.47 +1.3 618,413 - melR MCAODC_03055 0.47 +0.4 618,479 + melR MCAODC_03055 0.54 +0.7 618,561 + melR MCAODC_03055 0.63 -0.7 618,562 - melR MCAODC_03055 0.63 -2.4 618,562 - melR MCAODC_03055 0.63 +2.3 618,562 - melR MCAODC_03055 0.63 +0.4 618,597 + melR MCAODC_03055 0.67 +1.0 618,644 + melR MCAODC_03055 0.72 -0.2 618,702 + melR MCAODC_03055 0.79 +0.6 618,702 + melR MCAODC_03055 0.79 -0.9 618,702 + melR MCAODC_03055 0.79 -1.2 618,703 - melR MCAODC_03055 0.79 +0.2 618,703 - melR MCAODC_03055 0.79 -1.6 618,761 + melR MCAODC_03055 0.85 +1.7 618,828 + -1.8 618,828 + -0.7 618,828 + -2.0 618,828 + +0.2 618,828 + +0.7 618,829 - -1.1 618,829 - +0.6 618,829 - -3.3 618,895 - +0.7 618,909 + +1.4 618,942 + -1.0 618,943 - +1.7 619,051 + +0.2 619,051 + -0.8 619,103 - -2.5 619,103 - -1.5 619,448 + adiA MCAODC_03060 0.16 +0.7 619,449 - adiA MCAODC_03060 0.16 -0.4 619,539 + adiA MCAODC_03060 0.20 -0.4 619,557 + adiA MCAODC_03060 0.20 +0.8 619,557 + adiA MCAODC_03060 0.20 -1.4 619,557 + adiA MCAODC_03060 0.20 +0.2 619,558 - adiA MCAODC_03060 0.20 -0.5 619,558 - adiA MCAODC_03060 0.20 -3.4 619,558 - adiA MCAODC_03060 0.20 +0.4 619,623 + adiA MCAODC_03060 0.23 -0.2 619,624 - adiA MCAODC_03060 0.23 -0.3 619,632 + adiA MCAODC_03060 0.24 +0.4 619,633 - adiA MCAODC_03060 0.24 +0.5 619,633 - adiA MCAODC_03060 0.24 +0.0 619,635 + adiA MCAODC_03060 0.24 -3.6 619,636 - adiA MCAODC_03060 0.24 +0.0 619,636 - adiA MCAODC_03060 0.24 +1.5 619,636 - adiA MCAODC_03060 0.24 +0.3 619,744 + adiA MCAODC_03060 0.29 +1.5 619,782 - adiA MCAODC_03060 0.30 +0.1 619,850 + adiA MCAODC_03060 0.33 +0.1 619,850 + adiA MCAODC_03060 0.33 +0.6 619,850 + adiA MCAODC_03060 0.33 +1.2 619,851 - adiA MCAODC_03060 0.33 -0.7 619,851 - adiA MCAODC_03060 0.33 +0.4
Or see this region's nucleotide sequence