Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purA and yjeT are separated by 103 nucleotides yjeT and hflC are separated by 81 nucleotides hflC and hflK are separated by 2 nucleotides
MCAODC_02745: purA - adenylosuccinate synthase, at 554,354 to 555,652
purA
MCAODC_02750: yjeT - Uncharacterized protein YjeT, at 555,756 to 555,953
yjeT
MCAODC_02755: hflC - protease modulator HflC, at 556,035 to 557,039
hflC
MCAODC_02760: hflK - FtsH protease activity modulator HflK, at 557,042 to 558,301
hflK
Position (kb) 556
557
558 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 555.083 kb on - strand, within purA at 555.102 kb on + strand, within purA at 555.527 kb on - strand at 555.688 kb on - strand at 555.707 kb on + strand at 555.707 kb on + strand at 555.707 kb on + strand at 555.708 kb on - strand at 555.781 kb on + strand, within yjeT at 555.781 kb on + strand, within yjeT at 555.781 kb on + strand, within yjeT at 555.781 kb on + strand, within yjeT at 555.782 kb on - strand, within yjeT at 555.784 kb on + strand, within yjeT at 555.833 kb on + strand, within yjeT at 555.959 kb on - strand at 555.964 kb on + strand at 555.966 kb on + strand at 555.967 kb on - strand at 555.967 kb on - strand at 556.009 kb on + strand at 556.010 kb on - strand at 556.031 kb on + strand at 556.031 kb on + strand at 556.033 kb on + strand at 556.034 kb on - strand at 556.034 kb on - strand at 556.034 kb on - strand at 556.066 kb on + strand at 556.067 kb on - strand at 556.370 kb on - strand, within hflC at 556.556 kb on + strand, within hflC at 556.677 kb on - strand, within hflC at 556.730 kb on - strand, within hflC at 556.766 kb on - strand, within hflC at 556.766 kb on - strand, within hflC at 556.766 kb on - strand, within hflC at 556.873 kb on - strand, within hflC at 556.930 kb on - strand, within hflC at 556.950 kb on - strand at 556.991 kb on - strand at 556.991 kb on - strand at 557.016 kb on - strand at 557.098 kb on + strand at 557.490 kb on + strand, within hflK at 557.491 kb on - strand, within hflK at 557.512 kb on - strand, within hflK at 557.663 kb on - strand, within hflK at 557.711 kb on - strand, within hflK at 557.779 kb on - strand, within hflK at 557.779 kb on - strand, within hflK at 557.966 kb on - strand, within hflK at 558.008 kb on - strand, within hflK at 558.010 kb on - strand, within hflK at 558.032 kb on - strand, within hflK
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 555,083 - purA MCAODC_02745 0.56 -2.1 555,102 + purA MCAODC_02745 0.58 -2.1 555,527 - -0.7 555,688 - -1.4 555,707 + -2.9 555,707 + -3.4 555,707 + -0.6 555,708 - -2.4 555,781 + yjeT MCAODC_02750 0.13 -4.6 555,781 + yjeT MCAODC_02750 0.13 -2.3 555,781 + yjeT MCAODC_02750 0.13 -1.0 555,781 + yjeT MCAODC_02750 0.13 +0.1 555,782 - yjeT MCAODC_02750 0.13 -2.8 555,784 + yjeT MCAODC_02750 0.14 +0.4 555,833 + yjeT MCAODC_02750 0.39 +0.2 555,959 - -0.3 555,964 + +0.8 555,966 + -0.1 555,967 - -1.1 555,967 - -1.8 556,009 + +0.8 556,010 - -0.9 556,031 + -0.5 556,031 + -0.2 556,033 + -0.3 556,034 - -2.5 556,034 - +0.9 556,034 - +1.7 556,066 + +0.6 556,067 - +0.3 556,370 - hflC MCAODC_02755 0.33 +0.3 556,556 + hflC MCAODC_02755 0.52 -0.9 556,677 - hflC MCAODC_02755 0.64 +0.9 556,730 - hflC MCAODC_02755 0.69 -0.0 556,766 - hflC MCAODC_02755 0.73 +2.1 556,766 - hflC MCAODC_02755 0.73 +1.7 556,766 - hflC MCAODC_02755 0.73 +1.1 556,873 - hflC MCAODC_02755 0.83 -1.0 556,930 - hflC MCAODC_02755 0.89 -1.8 556,950 - -2.7 556,991 - +1.4 556,991 - +2.5 557,016 - +0.9 557,098 + +1.1 557,490 + hflK MCAODC_02760 0.36 -0.6 557,491 - hflK MCAODC_02760 0.36 -0.3 557,512 - hflK MCAODC_02760 0.37 +0.8 557,663 - hflK MCAODC_02760 0.49 -0.9 557,711 - hflK MCAODC_02760 0.53 -0.1 557,779 - hflK MCAODC_02760 0.58 +1.4 557,779 - hflK MCAODC_02760 0.58 +1.9 557,966 - hflK MCAODC_02760 0.73 +2.4 558,008 - hflK MCAODC_02760 0.77 -2.9 558,010 - hflK MCAODC_02760 0.77 +1.3 558,032 - hflK MCAODC_02760 0.79 +0.0
Or see this region's nucleotide sequence