Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfK and yjfJ are separated by 50 nucleotides yjfJ and yjfI are separated by 18 nucleotides yjfI and rlmB are separated by 126 nucleotides
MCAODC_02715: yjfK - Uncharacterized protein YjfK, at 548,377 to 549,036
yjfK
MCAODC_02720: yjfJ - Uncharacterized protein YjfJ, at 549,087 to 549,785
yjfJ
MCAODC_02725: yjfI - Uncharacterized protein YjfI, at 549,804 to 550,205
yjfI
MCAODC_02730: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 550,332 to 551,063
rlmB
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.819 kb on + strand, within yjfK at 548.819 kb on + strand, within yjfK at 548.819 kb on + strand, within yjfK at 548.820 kb on - strand, within yjfK at 548.820 kb on - strand, within yjfK at 548.877 kb on + strand, within yjfK at 548.989 kb on - strand at 548.997 kb on + strand at 548.997 kb on + strand at 548.998 kb on - strand at 548.998 kb on - strand at 548.998 kb on - strand at 549.000 kb on + strand at 549.001 kb on - strand at 549.036 kb on + strand at 549.036 kb on + strand at 549.036 kb on + strand at 549.037 kb on - strand at 549.037 kb on - strand at 549.041 kb on + strand at 549.042 kb on - strand at 549.047 kb on + strand at 549.048 kb on - strand at 549.052 kb on + strand at 549.053 kb on - strand at 549.053 kb on - strand at 549.117 kb on + strand at 549.117 kb on + strand at 549.117 kb on + strand at 549.117 kb on + strand at 549.117 kb on + strand at 549.118 kb on - strand at 549.118 kb on - strand at 549.118 kb on - strand at 549.118 kb on - strand at 549.118 kb on - strand at 549.120 kb on + strand at 549.120 kb on + strand at 549.120 kb on + strand at 549.121 kb on - strand at 549.121 kb on - strand at 549.121 kb on - strand at 549.121 kb on - strand at 549.140 kb on + strand at 549.140 kb on + strand at 549.141 kb on - strand at 549.207 kb on + strand, within yjfJ at 549.589 kb on - strand, within yjfJ at 549.612 kb on + strand, within yjfJ at 549.786 kb on - strand at 549.789 kb on + strand at 549.864 kb on + strand, within yjfI at 549.923 kb on - strand, within yjfI at 549.991 kb on - strand, within yjfI at 550.148 kb on + strand, within yjfI at 550.206 kb on - strand at 550.207 kb on + strand at 550.208 kb on - strand at 550.210 kb on + strand at 550.220 kb on - strand at 550.224 kb on + strand at 550.278 kb on + strand at 550.278 kb on + strand at 550.280 kb on + strand at 550.461 kb on - strand, within rlmB at 550.516 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.524 kb on - strand, within rlmB at 550.560 kb on - strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.642 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.980 kb on + strand, within rlmB at 550.981 kb on - strand, within rlmB at 550.981 kb on - strand, within rlmB at 551.065 kb on - strand at 551.069 kb on + strand at 551.069 kb on + strand at 551.070 kb on - strand at 551.115 kb on - strand at 551.130 kb on + strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.150 kb on - strand at 551.150 kb on - strand at 551.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 548,819 + yjfK MCAODC_02715 0.67 -1.6 548,819 + yjfK MCAODC_02715 0.67 +1.0 548,819 + yjfK MCAODC_02715 0.67 -0.5 548,820 - yjfK MCAODC_02715 0.67 -1.7 548,820 - yjfK MCAODC_02715 0.67 +0.3 548,877 + yjfK MCAODC_02715 0.76 -0.0 548,989 - +0.7 548,997 + -0.8 548,997 + +0.8 548,998 - -3.3 548,998 - +0.6 548,998 - -0.2 549,000 + +0.4 549,001 - +0.8 549,036 + -3.0 549,036 + +0.4 549,036 + -1.2 549,037 - -0.7 549,037 - -0.5 549,041 + -3.0 549,042 - +0.5 549,047 + +1.6 549,048 - +0.8 549,052 + +0.1 549,053 - -1.3 549,053 - +0.6 549,117 + +0.7 549,117 + -0.3 549,117 + -0.6 549,117 + -1.8 549,117 + +0.5 549,118 - +0.8 549,118 - -0.1 549,118 - -1.5 549,118 - +0.7 549,118 - +0.2 549,120 + -0.4 549,120 + -0.7 549,120 + +1.2 549,121 - -1.3 549,121 - +0.6 549,121 - +0.6 549,121 - -0.7 549,140 + -0.0 549,140 + +1.2 549,141 - +0.1 549,207 + yjfJ MCAODC_02720 0.17 +0.3 549,589 - yjfJ MCAODC_02720 0.72 -0.2 549,612 + yjfJ MCAODC_02720 0.75 -0.1 549,786 - +1.2 549,789 + +1.1 549,864 + yjfI MCAODC_02725 0.15 +0.7 549,923 - yjfI MCAODC_02725 0.30 -0.6 549,991 - yjfI MCAODC_02725 0.47 -1.0 550,148 + yjfI MCAODC_02725 0.86 -1.1 550,206 - -1.1 550,207 + +0.7 550,208 - +0.3 550,210 + -3.0 550,220 - -1.2 550,224 + -0.6 550,278 + -0.6 550,278 + -1.3 550,280 + -0.6 550,461 - rlmB MCAODC_02730 0.18 +0.2 550,516 + rlmB MCAODC_02730 0.25 +1.0 550,523 + rlmB MCAODC_02730 0.26 -0.6 550,523 + rlmB MCAODC_02730 0.26 +0.9 550,523 + rlmB MCAODC_02730 0.26 +1.0 550,523 + rlmB MCAODC_02730 0.26 +0.8 550,524 - rlmB MCAODC_02730 0.26 +1.0 550,560 - rlmB MCAODC_02730 0.31 -2.1 550,577 + rlmB MCAODC_02730 0.33 -0.8 550,577 + rlmB MCAODC_02730 0.33 -0.1 550,577 + rlmB MCAODC_02730 0.33 +0.5 550,577 + rlmB MCAODC_02730 0.33 +1.3 550,577 + rlmB MCAODC_02730 0.33 +0.5 550,578 - rlmB MCAODC_02730 0.34 -1.6 550,578 - rlmB MCAODC_02730 0.34 -0.9 550,578 - rlmB MCAODC_02730 0.34 +0.8 550,578 - rlmB MCAODC_02730 0.34 +0.7 550,578 - rlmB MCAODC_02730 0.34 -0.8 550,578 - rlmB MCAODC_02730 0.34 +0.4 550,578 - rlmB MCAODC_02730 0.34 +1.7 550,642 - rlmB MCAODC_02730 0.42 +0.6 550,895 - rlmB MCAODC_02730 0.77 -1.5 550,895 - rlmB MCAODC_02730 0.77 +1.3 550,895 - rlmB MCAODC_02730 0.77 -0.0 550,980 + rlmB MCAODC_02730 0.89 +0.9 550,981 - rlmB MCAODC_02730 0.89 -2.4 550,981 - rlmB MCAODC_02730 0.89 -0.2 551,065 - +0.5 551,069 + -0.2 551,069 + -1.3 551,070 - -0.0 551,115 - -0.7 551,130 + +1.2 551,131 - +0.3 551,131 - -0.2 551,131 - -0.8 551,131 - -0.1 551,150 - +1.0 551,150 - +0.7 551,150 - -0.1
Or see this region's nucleotide sequence