Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02235 and MCAODC_02240 are separated by 151 nucleotides MCAODC_02240 and spoIVCA are separated by 198 nucleotides spoIVCA and MCAODC_02250 are separated by 192 nucleotides
MCAODC_02235: MCAODC_02235 - hypothetical protein, at 459,394 to 460,167
_02235
MCAODC_02240: MCAODC_02240 - hypothetical protein, at 460,319 to 461,635
_02240
MCAODC_02245: spoIVCA - resolvase, at 461,834 to 462,403
spoIVCA
MCAODC_02250: MCAODC_02250 - DUF1643 domain-containing protein, at 462,596 to 463,063
_02250
Position (kb) 460
461
462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 459.387 kb on + strand at 459.411 kb on + strand at 459.411 kb on + strand at 459.412 kb on - strand at 459.450 kb on + strand at 459.451 kb on - strand at 459.455 kb on + strand at 459.455 kb on + strand at 459.456 kb on - strand at 459.478 kb on + strand, within MCAODC_02235 at 459.478 kb on + strand, within MCAODC_02235 at 459.479 kb on - strand, within MCAODC_02235 at 459.479 kb on - strand, within MCAODC_02235 at 459.519 kb on + strand, within MCAODC_02235 at 459.591 kb on + strand, within MCAODC_02235 at 459.625 kb on - strand, within MCAODC_02235 at 459.625 kb on - strand, within MCAODC_02235 at 459.631 kb on + strand, within MCAODC_02235 at 459.631 kb on + strand, within MCAODC_02235 at 459.631 kb on + strand, within MCAODC_02235 at 459.632 kb on - strand, within MCAODC_02235 at 459.632 kb on - strand, within MCAODC_02235 at 459.632 kb on - strand, within MCAODC_02235 at 459.632 kb on - strand, within MCAODC_02235 at 459.632 kb on - strand, within MCAODC_02235 at 459.632 kb on - strand, within MCAODC_02235 at 459.646 kb on + strand, within MCAODC_02235 at 459.647 kb on - strand, within MCAODC_02235 at 459.682 kb on - strand, within MCAODC_02235 at 459.682 kb on - strand, within MCAODC_02235 at 459.720 kb on + strand, within MCAODC_02235 at 459.720 kb on + strand, within MCAODC_02235 at 459.720 kb on + strand, within MCAODC_02235 at 459.720 kb on + strand, within MCAODC_02235 at 459.720 kb on + strand, within MCAODC_02235 at 459.721 kb on - strand, within MCAODC_02235 at 459.721 kb on - strand, within MCAODC_02235 at 459.721 kb on - strand, within MCAODC_02235 at 459.721 kb on - strand, within MCAODC_02235 at 459.722 kb on + strand, within MCAODC_02235 at 459.722 kb on + strand, within MCAODC_02235 at 459.723 kb on - strand, within MCAODC_02235 at 459.723 kb on - strand, within MCAODC_02235 at 459.729 kb on - strand, within MCAODC_02235 at 459.729 kb on - strand, within MCAODC_02235 at 459.734 kb on + strand, within MCAODC_02235 at 459.760 kb on + strand, within MCAODC_02235 at 459.760 kb on + strand, within MCAODC_02235 at 459.787 kb on + strand, within MCAODC_02235 at 459.788 kb on - strand, within MCAODC_02235 at 459.861 kb on + strand, within MCAODC_02235 at 459.861 kb on + strand, within MCAODC_02235 at 459.862 kb on - strand, within MCAODC_02235 at 459.862 kb on - strand, within MCAODC_02235 at 459.901 kb on - strand, within MCAODC_02235 at 459.948 kb on + strand, within MCAODC_02235 at 460.072 kb on + strand, within MCAODC_02235 at 460.072 kb on + strand, within MCAODC_02235 at 460.073 kb on - strand, within MCAODC_02235 at 460.090 kb on + strand at 460.090 kb on + strand at 460.090 kb on + strand at 460.091 kb on - strand at 460.091 kb on - strand at 460.091 kb on - strand at 460.094 kb on + strand at 460.095 kb on - strand at 460.095 kb on - strand at 460.095 kb on - strand at 460.095 kb on - strand at 460.095 kb on - strand at 460.096 kb on + strand at 460.097 kb on - strand at 460.135 kb on + strand at 460.135 kb on + strand at 460.135 kb on + strand at 460.136 kb on - strand at 460.136 kb on - strand at 460.137 kb on + strand at 460.137 kb on + strand at 460.137 kb on + strand at 460.137 kb on + strand at 460.138 kb on - strand at 460.138 kb on - strand at 460.141 kb on + strand at 460.142 kb on - strand at 460.146 kb on + strand at 460.147 kb on - strand at 460.147 kb on - strand at 460.152 kb on + strand at 460.152 kb on + strand at 460.153 kb on - strand at 460.165 kb on + strand at 460.173 kb on + strand at 460.190 kb on + strand at 460.190 kb on + strand at 460.190 kb on + strand at 460.190 kb on + strand at 460.190 kb on + strand at 460.209 kb on + strand at 460.210 kb on - strand at 460.230 kb on - strand at 460.230 kb on - strand at 460.230 kb on - strand at 460.237 kb on + strand at 460.238 kb on - strand at 460.238 kb on - strand at 460.238 kb on - strand at 460.239 kb on + strand at 460.239 kb on + strand at 460.240 kb on - strand at 460.262 kb on - strand at 460.265 kb on + strand at 460.266 kb on - strand at 460.266 kb on - strand at 460.267 kb on + strand at 460.268 kb on - strand at 460.286 kb on + strand at 460.286 kb on + strand at 460.307 kb on + strand at 460.307 kb on + strand at 460.308 kb on - strand at 460.308 kb on - strand at 460.314 kb on + strand at 460.314 kb on + strand at 460.315 kb on - strand at 460.333 kb on + strand at 460.333 kb on + strand at 460.338 kb on + strand at 460.351 kb on + strand at 460.434 kb on - strand at 460.437 kb on + strand at 460.438 kb on - strand at 460.438 kb on - strand at 460.441 kb on + strand at 460.442 kb on - strand at 460.442 kb on - strand at 460.442 kb on - strand at 460.442 kb on - strand at 460.442 kb on - strand at 460.515 kb on - strand, within MCAODC_02240 at 460.546 kb on + strand, within MCAODC_02240 at 460.564 kb on + strand, within MCAODC_02240 at 460.579 kb on + strand, within MCAODC_02240 at 460.584 kb on + strand, within MCAODC_02240 at 460.584 kb on + strand, within MCAODC_02240 at 460.602 kb on + strand, within MCAODC_02240 at 460.634 kb on - strand, within MCAODC_02240 at 460.699 kb on - strand, within MCAODC_02240 at 460.702 kb on - strand, within MCAODC_02240 at 460.702 kb on - strand, within MCAODC_02240 at 460.724 kb on + strand, within MCAODC_02240 at 460.856 kb on + strand, within MCAODC_02240 at 460.857 kb on - strand, within MCAODC_02240 at 460.935 kb on + strand, within MCAODC_02240 at 460.985 kb on + strand, within MCAODC_02240 at 461.092 kb on + strand, within MCAODC_02240 at 461.092 kb on + strand, within MCAODC_02240 at 461.093 kb on - strand, within MCAODC_02240 at 461.113 kb on - strand, within MCAODC_02240 at 461.115 kb on + strand, within MCAODC_02240 at 461.115 kb on + strand, within MCAODC_02240 at 461.116 kb on - strand, within MCAODC_02240 at 461.141 kb on - strand, within MCAODC_02240 at 461.260 kb on + strand, within MCAODC_02240 at 461.261 kb on - strand, within MCAODC_02240 at 461.320 kb on - strand, within MCAODC_02240 at 461.323 kb on + strand, within MCAODC_02240 at 461.340 kb on - strand, within MCAODC_02240 at 461.362 kb on - strand, within MCAODC_02240 at 461.373 kb on + strand, within MCAODC_02240 at 461.378 kb on - strand, within MCAODC_02240 at 461.417 kb on + strand, within MCAODC_02240 at 461.430 kb on + strand, within MCAODC_02240 at 461.490 kb on + strand, within MCAODC_02240 at 461.490 kb on + strand, within MCAODC_02240 at 461.491 kb on - strand, within MCAODC_02240 at 461.491 kb on - strand, within MCAODC_02240 at 461.491 kb on - strand, within MCAODC_02240 at 461.514 kb on + strand at 461.515 kb on - strand at 461.539 kb on + strand at 461.558 kb on + strand at 461.558 kb on + strand at 461.559 kb on - strand at 461.559 kb on - strand at 461.598 kb on + strand at 461.599 kb on - strand at 461.671 kb on + strand at 461.672 kb on - strand at 461.674 kb on - strand at 461.732 kb on + strand at 461.732 kb on + strand at 461.733 kb on - strand at 461.791 kb on + strand at 461.792 kb on - strand at 461.792 kb on - strand at 461.792 kb on - strand at 461.814 kb on + strand at 461.826 kb on + strand at 461.826 kb on + strand at 461.827 kb on - strand at 461.827 kb on - strand at 461.830 kb on + strand at 461.831 kb on - strand at 461.832 kb on + strand at 461.883 kb on + strand at 461.884 kb on - strand at 462.016 kb on + strand, within spoIVCA at 462.016 kb on + strand, within spoIVCA at 462.062 kb on + strand, within spoIVCA at 462.127 kb on + strand, within spoIVCA at 462.212 kb on + strand, within spoIVCA at 462.293 kb on + strand, within spoIVCA at 462.293 kb on + strand, within spoIVCA at 462.294 kb on - strand, within spoIVCA at 462.294 kb on - strand, within spoIVCA at 462.294 kb on - strand, within spoIVCA at 462.397 kb on + strand at 462.398 kb on - strand at 462.403 kb on + strand at 462.403 kb on + strand at 462.403 kb on + strand at 462.404 kb on - strand at 462.404 kb on - strand at 462.448 kb on + strand at 462.448 kb on + strand at 462.449 kb on - strand at 462.476 kb on + strand at 462.477 kb on - strand at 462.542 kb on - strand at 462.561 kb on + strand at 462.583 kb on - strand at 462.602 kb on - strand at 462.602 kb on - strand at 462.628 kb on + strand at 462.629 kb on - strand at 462.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 459,387 + -0.7 459,411 + -0.0 459,411 + +0.9 459,412 - -0.7 459,450 + +1.9 459,451 - +0.1 459,455 + +1.5 459,455 + -0.1 459,456 - -0.1 459,478 + MCAODC_02235 0.11 +0.8 459,478 + MCAODC_02235 0.11 +0.7 459,479 - MCAODC_02235 0.11 +1.2 459,479 - MCAODC_02235 0.11 +0.2 459,519 + MCAODC_02235 0.16 +1.0 459,591 + MCAODC_02235 0.25 +0.0 459,625 - MCAODC_02235 0.30 -0.1 459,625 - MCAODC_02235 0.30 +1.1 459,631 + MCAODC_02235 0.31 -0.9 459,631 + MCAODC_02235 0.31 +1.2 459,631 + MCAODC_02235 0.31 +0.6 459,632 - MCAODC_02235 0.31 +0.8 459,632 - MCAODC_02235 0.31 +0.2 459,632 - MCAODC_02235 0.31 -0.4 459,632 - MCAODC_02235 0.31 +0.9 459,632 - MCAODC_02235 0.31 -2.5 459,632 - MCAODC_02235 0.31 +0.7 459,646 + MCAODC_02235 0.33 -0.0 459,647 - MCAODC_02235 0.33 +0.5 459,682 - MCAODC_02235 0.37 +0.4 459,682 - MCAODC_02235 0.37 -1.8 459,720 + MCAODC_02235 0.42 +0.1 459,720 + MCAODC_02235 0.42 +0.5 459,720 + MCAODC_02235 0.42 +1.3 459,720 + MCAODC_02235 0.42 -0.9 459,720 + MCAODC_02235 0.42 -0.5 459,721 - MCAODC_02235 0.42 -1.1 459,721 - MCAODC_02235 0.42 -0.4 459,721 - MCAODC_02235 0.42 +0.6 459,721 - MCAODC_02235 0.42 +0.0 459,722 + MCAODC_02235 0.42 +0.4 459,722 + MCAODC_02235 0.42 +0.0 459,723 - MCAODC_02235 0.43 -2.1 459,723 - MCAODC_02235 0.43 -0.2 459,729 - MCAODC_02235 0.43 -1.3 459,729 - MCAODC_02235 0.43 +1.3 459,734 + MCAODC_02235 0.44 -1.5 459,760 + MCAODC_02235 0.47 +0.4 459,760 + MCAODC_02235 0.47 +1.0 459,787 + MCAODC_02235 0.51 -0.3 459,788 - MCAODC_02235 0.51 +0.3 459,861 + MCAODC_02235 0.60 -1.7 459,861 + MCAODC_02235 0.60 -1.9 459,862 - MCAODC_02235 0.60 +0.9 459,862 - MCAODC_02235 0.60 -0.9 459,901 - MCAODC_02235 0.66 +1.8 459,948 + MCAODC_02235 0.72 +1.6 460,072 + MCAODC_02235 0.88 +1.9 460,072 + MCAODC_02235 0.88 +0.6 460,073 - MCAODC_02235 0.88 +0.4 460,090 + +0.8 460,090 + +0.7 460,090 + -0.4 460,091 - +0.9 460,091 - -0.1 460,091 - -0.0 460,094 + +0.6 460,095 - +1.0 460,095 - +0.1 460,095 - +2.0 460,095 - +0.4 460,095 - -0.9 460,096 + +0.8 460,097 - -0.9 460,135 + -0.4 460,135 + +0.0 460,135 + -0.9 460,136 - +1.4 460,136 - +0.6 460,137 + +0.9 460,137 + +1.1 460,137 + +0.0 460,137 + -0.0 460,138 - -0.0 460,138 - +0.1 460,141 + -0.6 460,142 - +1.0 460,146 + -0.8 460,147 - +0.7 460,147 - +0.2 460,152 + -0.6 460,152 + -1.2 460,153 - -3.3 460,165 + -1.3 460,173 + +1.4 460,190 + +0.0 460,190 + +1.3 460,190 + -0.4 460,190 + -0.3 460,190 + +2.3 460,209 + -0.1 460,210 - -0.3 460,230 - +1.5 460,230 - +0.4 460,230 - -0.0 460,237 + +0.7 460,238 - +0.6 460,238 - +0.6 460,238 - -0.8 460,239 + +0.7 460,239 + +0.8 460,240 - +0.4 460,262 - +0.1 460,265 + +1.3 460,266 - -0.5 460,266 - -2.7 460,267 + -0.3 460,268 - -0.3 460,286 + +0.5 460,286 + -0.6 460,307 + -0.9 460,307 + -0.0 460,308 - -0.3 460,308 - -0.4 460,314 + -0.5 460,314 + -0.3 460,315 - +1.2 460,333 + -0.5 460,333 + -0.7 460,338 + +0.6 460,351 + -1.1 460,434 - +1.7 460,437 + -1.7 460,438 - +0.1 460,438 - +0.5 460,441 + -2.9 460,442 - -2.5 460,442 - +0.5 460,442 - -2.0 460,442 - +0.5 460,442 - -0.7 460,515 - MCAODC_02240 0.15 +0.1 460,546 + MCAODC_02240 0.17 +0.5 460,564 + MCAODC_02240 0.19 +0.4 460,579 + MCAODC_02240 0.20 +0.3 460,584 + MCAODC_02240 0.20 -4.5 460,584 + MCAODC_02240 0.20 -2.4 460,602 + MCAODC_02240 0.21 +0.5 460,634 - MCAODC_02240 0.24 +0.7 460,699 - MCAODC_02240 0.29 +0.2 460,702 - MCAODC_02240 0.29 -0.0 460,702 - MCAODC_02240 0.29 -0.8 460,724 + MCAODC_02240 0.31 -0.9 460,856 + MCAODC_02240 0.41 +0.1 460,857 - MCAODC_02240 0.41 +0.1 460,935 + MCAODC_02240 0.47 +1.0 460,985 + MCAODC_02240 0.51 +1.2 461,092 + MCAODC_02240 0.59 +0.6 461,092 + MCAODC_02240 0.59 -1.7 461,093 - MCAODC_02240 0.59 +0.8 461,113 - MCAODC_02240 0.60 +1.1 461,115 + MCAODC_02240 0.60 +0.0 461,115 + MCAODC_02240 0.60 -2.1 461,116 - MCAODC_02240 0.61 -0.0 461,141 - MCAODC_02240 0.62 -0.0 461,260 + MCAODC_02240 0.71 -0.7 461,261 - MCAODC_02240 0.72 -3.9 461,320 - MCAODC_02240 0.76 +0.2 461,323 + MCAODC_02240 0.76 -1.5 461,340 - MCAODC_02240 0.78 +1.2 461,362 - MCAODC_02240 0.79 -1.1 461,373 + MCAODC_02240 0.80 -1.2 461,378 - MCAODC_02240 0.80 -4.0 461,417 + MCAODC_02240 0.83 -0.6 461,430 + MCAODC_02240 0.84 -1.1 461,490 + MCAODC_02240 0.89 -0.2 461,490 + MCAODC_02240 0.89 -0.4 461,491 - MCAODC_02240 0.89 +1.4 461,491 - MCAODC_02240 0.89 +0.1 461,491 - MCAODC_02240 0.89 -0.7 461,514 + -0.2 461,515 - +0.4 461,539 + +1.0 461,558 + -3.1 461,558 + +0.4 461,559 - +0.3 461,559 - -0.9 461,598 + +0.9 461,599 - -0.0 461,671 + +0.3 461,672 - +1.3 461,674 - -1.1 461,732 + -3.2 461,732 + +0.5 461,733 - +0.4 461,791 + +0.9 461,792 - -1.2 461,792 - +0.4 461,792 - -1.1 461,814 + +0.8 461,826 + -4.4 461,826 + +0.3 461,827 - -0.3 461,827 - -1.3 461,830 + +2.2 461,831 - -2.4 461,832 + -1.9 461,883 + +0.4 461,884 - -1.5 462,016 + spoIVCA MCAODC_02245 0.32 +0.6 462,016 + spoIVCA MCAODC_02245 0.32 -0.5 462,062 + spoIVCA MCAODC_02245 0.40 -2.3 462,127 + spoIVCA MCAODC_02245 0.51 +1.3 462,212 + spoIVCA MCAODC_02245 0.66 +0.6 462,293 + spoIVCA MCAODC_02245 0.81 +0.2 462,293 + spoIVCA MCAODC_02245 0.81 -0.6 462,294 - spoIVCA MCAODC_02245 0.81 -1.3 462,294 - spoIVCA MCAODC_02245 0.81 -1.2 462,294 - spoIVCA MCAODC_02245 0.81 +0.0 462,397 + -1.3 462,398 - -0.0 462,403 + -0.4 462,403 + -2.9 462,403 + +0.6 462,404 - +0.3 462,404 - +0.4 462,448 + +0.7 462,448 + -0.1 462,449 - -2.6 462,476 + +0.7 462,477 - -0.4 462,542 - -3.2 462,561 + +1.0 462,583 - +0.8 462,602 - -0.8 462,602 - +0.9 462,628 + -0.3 462,629 - +0.8 462,633 - +0.1
Or see this region's nucleotide sequence