Strain Fitness in Escherichia coli ECRC101 around MCAODC_02135

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnanC and nanM are separated by 19 nucleotides MCAODC_02135: nanC - N-acetylneuraminic acid outer membrane channel NanC, at 421,208 to 421,924 nanC MCAODC_02140: nanM - N-acetylneuraminate epimerase, at 421,944 to 423,050 nanM Position (kb) 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 420.261 kb on + strandat 420.274 kb on - strandat 420.284 kb on + strandat 420.285 kb on - strandat 420.316 kb on + strandat 420.334 kb on + strandat 420.335 kb on - strandat 420.348 kb on - strandat 420.354 kb on + strandat 420.403 kb on + strandat 420.438 kb on + strandat 420.439 kb on - strandat 420.439 kb on - strandat 420.439 kb on - strandat 420.474 kb on - strandat 420.496 kb on + strandat 420.780 kb on - strandat 420.827 kb on - strandat 420.955 kb on + strandat 421.116 kb on + strandat 421.145 kb on + strandat 421.307 kb on - strand, within nanCat 421.384 kb on + strand, within nanCat 421.454 kb on - strand, within nanCat 421.532 kb on + strand, within nanCat 421.545 kb on + strand, within nanCat 421.546 kb on - strand, within nanCat 421.546 kb on - strand, within nanCat 421.639 kb on + strand, within nanCat 421.639 kb on + strand, within nanCat 421.640 kb on - strand, within nanCat 421.640 kb on - strand, within nanCat 421.683 kb on - strand, within nanCat 421.688 kb on - strand, within nanCat 421.691 kb on - strand, within nanCat 421.693 kb on + strand, within nanCat 421.727 kb on + strand, within nanCat 421.728 kb on - strand, within nanCat 421.819 kb on + strand, within nanCat 421.830 kb on + strand, within nanCat 421.841 kb on + strand, within nanCat 421.895 kb on + strandat 421.949 kb on + strandat 421.976 kb on - strandat 422.008 kb on + strandat 422.023 kb on + strandat 422.067 kb on + strand, within nanMat 422.067 kb on + strand, within nanMat 422.068 kb on - strand, within nanMat 422.068 kb on - strand, within nanMat 422.068 kb on - strand, within nanMat 422.068 kb on - strand, within nanMat 422.077 kb on + strand, within nanMat 422.100 kb on + strand, within nanMat 422.100 kb on + strand, within nanMat 422.101 kb on - strand, within nanMat 422.144 kb on - strand, within nanMat 422.189 kb on + strand, within nanMat 422.190 kb on - strand, within nanMat 422.190 kb on - strand, within nanMat 422.190 kb on - strand, within nanMat 422.205 kb on + strand, within nanMat 422.206 kb on - strand, within nanMat 422.263 kb on + strand, within nanMat 422.271 kb on + strand, within nanMat 422.272 kb on - strand, within nanMat 422.272 kb on - strand, within nanMat 422.365 kb on - strand, within nanMat 422.365 kb on - strand, within nanMat 422.466 kb on + strand, within nanMat 422.615 kb on + strand, within nanMat 422.826 kb on + strand, within nanMat 422.864 kb on + strand, within nanM

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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420,261 + +0.7
420,274 - +0.7
420,284 + +0.5
420,285 - -0.1
420,316 + +1.2
420,334 + +0.5
420,335 - +1.4
420,348 - -1.4
420,354 + +1.1
420,403 + +0.1
420,438 + -0.3
420,439 - +1.5
420,439 - +0.5
420,439 - -0.4
420,474 - -0.7
420,496 + -0.5
420,780 - +1.0
420,827 - -2.8
420,955 + -3.4
421,116 + +1.0
421,145 + +1.6
421,307 - nanC MCAODC_02135 0.14 +0.5
421,384 + nanC MCAODC_02135 0.25 +0.5
421,454 - nanC MCAODC_02135 0.34 -4.3
421,532 + nanC MCAODC_02135 0.45 -1.8
421,545 + nanC MCAODC_02135 0.47 +0.8
421,546 - nanC MCAODC_02135 0.47 -0.1
421,546 - nanC MCAODC_02135 0.47 -0.6
421,639 + nanC MCAODC_02135 0.60 +0.3
421,639 + nanC MCAODC_02135 0.60 +0.8
421,640 - nanC MCAODC_02135 0.60 -1.7
421,640 - nanC MCAODC_02135 0.60 +2.5
421,683 - nanC MCAODC_02135 0.66 +1.2
421,688 - nanC MCAODC_02135 0.67 -0.7
421,691 - nanC MCAODC_02135 0.67 +0.2
421,693 + nanC MCAODC_02135 0.68 -1.2
421,727 + nanC MCAODC_02135 0.72 -1.0
421,728 - nanC MCAODC_02135 0.73 -1.1
421,819 + nanC MCAODC_02135 0.85 -0.8
421,830 + nanC MCAODC_02135 0.87 +0.7
421,841 + nanC MCAODC_02135 0.88 +1.2
421,895 + -1.0
421,949 + +0.5
421,976 - +0.2
422,008 + -3.1
422,023 + +1.0
422,067 + nanM MCAODC_02140 0.11 -0.4
422,067 + nanM MCAODC_02140 0.11 +3.5
422,068 - nanM MCAODC_02140 0.11 -0.2
422,068 - nanM MCAODC_02140 0.11 -0.4
422,068 - nanM MCAODC_02140 0.11 +1.0
422,068 - nanM MCAODC_02140 0.11 -1.3
422,077 + nanM MCAODC_02140 0.12 +0.4
422,100 + nanM MCAODC_02140 0.14 +0.8
422,100 + nanM MCAODC_02140 0.14 +1.0
422,101 - nanM MCAODC_02140 0.14 -0.4
422,144 - nanM MCAODC_02140 0.18 +3.9
422,189 + nanM MCAODC_02140 0.22 +0.2
422,190 - nanM MCAODC_02140 0.22 +1.6
422,190 - nanM MCAODC_02140 0.22 -1.0
422,190 - nanM MCAODC_02140 0.22 +2.3
422,205 + nanM MCAODC_02140 0.24 -1.3
422,206 - nanM MCAODC_02140 0.24 +0.3
422,263 + nanM MCAODC_02140 0.29 -0.7
422,271 + nanM MCAODC_02140 0.30 +0.5
422,272 - nanM MCAODC_02140 0.30 +0.2
422,272 - nanM MCAODC_02140 0.30 +0.5
422,365 - nanM MCAODC_02140 0.38 -2.2
422,365 - nanM MCAODC_02140 0.38 +0.2
422,466 + nanM MCAODC_02140 0.47 +0.1
422,615 + nanM MCAODC_02140 0.61 -0.5
422,826 + nanM MCAODC_02140 0.80 +0.2
422,864 + nanM MCAODC_02140 0.83 -1.6

Or see this region's nucleotide sequence