Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_01725 and deoD are separated by 160 nucleotides deoD and deoB are separated by 56 nucleotides deoB and deoA are separated by 51 nucleotides
MCAODC_01725: MCAODC_01725 - transcriptional regulator, at 335,773 to 336,036
_01725
MCAODC_01730: deoD - purine-nucleoside phosphorylase, at 336,197 to 336,916
deoD
MCAODC_01735: deoB - phosphopentomutase, at 336,973 to 338,196
deoB
MCAODC_01740: deoA - thymidine phosphorylase, at 338,248 to 339,570
deoA
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 336.031 kb on - strand at 336.031 kb on - strand at 336.054 kb on + strand at 336.054 kb on + strand at 336.055 kb on - strand at 336.128 kb on - strand at 336.131 kb on + strand at 336.131 kb on + strand at 336.134 kb on + strand at 336.135 kb on - strand at 336.165 kb on + strand at 336.166 kb on - strand at 336.198 kb on + strand at 336.199 kb on - strand at 336.358 kb on - strand, within deoD at 336.358 kb on - strand, within deoD at 336.396 kb on + strand, within deoD at 336.397 kb on - strand, within deoD at 336.397 kb on - strand, within deoD at 336.500 kb on + strand, within deoD at 336.500 kb on + strand, within deoD at 336.500 kb on + strand, within deoD at 336.501 kb on - strand, within deoD at 336.501 kb on - strand, within deoD at 336.509 kb on - strand, within deoD at 336.554 kb on - strand, within deoD at 336.620 kb on + strand, within deoD at 336.620 kb on + strand, within deoD at 336.620 kb on + strand, within deoD at 336.699 kb on + strand, within deoD at 336.700 kb on - strand, within deoD at 336.700 kb on - strand, within deoD at 336.759 kb on + strand, within deoD at 336.759 kb on + strand, within deoD at 336.760 kb on - strand, within deoD at 336.760 kb on - strand, within deoD at 336.764 kb on - strand, within deoD at 336.764 kb on - strand, within deoD at 336.832 kb on + strand, within deoD at 336.832 kb on + strand, within deoD at 336.832 kb on + strand, within deoD at 336.833 kb on - strand, within deoD at 336.834 kb on + strand, within deoD at 336.834 kb on + strand, within deoD at 336.835 kb on - strand, within deoD at 336.835 kb on - strand, within deoD at 336.898 kb on + strand at 336.898 kb on + strand at 336.898 kb on + strand at 336.899 kb on - strand at 336.899 kb on - strand at 336.938 kb on + strand at 336.939 kb on - strand at 336.939 kb on - strand at 337.016 kb on + strand at 337.017 kb on - strand at 337.245 kb on - strand, within deoB at 337.245 kb on - strand, within deoB at 337.314 kb on + strand, within deoB at 337.314 kb on + strand, within deoB at 337.315 kb on - strand, within deoB at 337.406 kb on + strand, within deoB at 337.406 kb on + strand, within deoB at 337.406 kb on + strand, within deoB at 337.407 kb on - strand, within deoB at 337.407 kb on - strand, within deoB at 337.407 kb on - strand, within deoB at 337.407 kb on - strand, within deoB at 337.580 kb on + strand, within deoB at 337.626 kb on - strand, within deoB at 337.690 kb on - strand, within deoB at 337.692 kb on - strand, within deoB at 337.775 kb on + strand, within deoB at 337.851 kb on - strand, within deoB at 337.851 kb on - strand, within deoB at 337.905 kb on + strand, within deoB at 337.905 kb on + strand, within deoB at 338.055 kb on + strand, within deoB at 338.056 kb on - strand, within deoB at 338.148 kb on + strand at 338.178 kb on + strand at 338.179 kb on - strand at 338.179 kb on - strand at 338.181 kb on + strand at 338.181 kb on + strand at 338.181 kb on + strand at 338.181 kb on + strand at 338.182 kb on - strand at 338.182 kb on - strand at 338.196 kb on + strand at 338.196 kb on + strand at 338.197 kb on - strand at 338.197 kb on - strand at 338.207 kb on + strand at 338.241 kb on + strand at 338.241 kb on + strand at 338.242 kb on - strand at 338.244 kb on - strand at 338.308 kb on - strand at 338.308 kb on - strand at 338.308 kb on - strand at 338.308 kb on - strand at 338.392 kb on + strand, within deoA at 338.436 kb on - strand, within deoA at 338.540 kb on + strand, within deoA at 338.540 kb on + strand, within deoA at 338.541 kb on - strand, within deoA at 338.573 kb on + strand, within deoA at 338.573 kb on + strand, within deoA at 338.574 kb on - strand, within deoA at 338.574 kb on - strand, within deoA at 338.582 kb on + strand, within deoA at 338.582 kb on + strand, within deoA at 338.626 kb on - strand, within deoA at 338.626 kb on - strand, within deoA at 338.626 kb on - strand, within deoA at 338.650 kb on - strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.931 kb on - strand, within deoA at 338.940 kb on + strand, within deoA at 339.054 kb on + strand, within deoA at 339.055 kb on - strand, within deoA at 339.132 kb on + strand, within deoA at 339.136 kb on - strand, within deoA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 336,031 - -1.3 336,031 - +0.2 336,054 + +1.5 336,054 + -1.5 336,055 - +0.4 336,128 - +0.1 336,131 + +0.0 336,131 + +0.7 336,134 + +0.0 336,135 - +1.3 336,165 + +0.1 336,166 - -1.1 336,198 + -0.4 336,199 - -0.2 336,358 - deoD MCAODC_01730 0.22 +0.1 336,358 - deoD MCAODC_01730 0.22 -2.4 336,396 + deoD MCAODC_01730 0.28 +1.8 336,397 - deoD MCAODC_01730 0.28 -0.7 336,397 - deoD MCAODC_01730 0.28 +1.5 336,500 + deoD MCAODC_01730 0.42 -2.9 336,500 + deoD MCAODC_01730 0.42 +1.1 336,500 + deoD MCAODC_01730 0.42 -1.7 336,501 - deoD MCAODC_01730 0.42 -0.2 336,501 - deoD MCAODC_01730 0.42 +1.1 336,509 - deoD MCAODC_01730 0.43 -0.8 336,554 - deoD MCAODC_01730 0.50 -0.9 336,620 + deoD MCAODC_01730 0.59 -2.7 336,620 + deoD MCAODC_01730 0.59 +1.8 336,620 + deoD MCAODC_01730 0.59 -0.3 336,699 + deoD MCAODC_01730 0.70 -0.4 336,700 - deoD MCAODC_01730 0.70 -0.8 336,700 - deoD MCAODC_01730 0.70 +0.1 336,759 + deoD MCAODC_01730 0.78 -0.8 336,759 + deoD MCAODC_01730 0.78 -0.0 336,760 - deoD MCAODC_01730 0.78 +4.3 336,760 - deoD MCAODC_01730 0.78 -1.0 336,764 - deoD MCAODC_01730 0.79 -2.2 336,764 - deoD MCAODC_01730 0.79 +0.3 336,832 + deoD MCAODC_01730 0.88 -0.0 336,832 + deoD MCAODC_01730 0.88 -2.2 336,832 + deoD MCAODC_01730 0.88 -1.6 336,833 - deoD MCAODC_01730 0.88 +0.6 336,834 + deoD MCAODC_01730 0.88 -2.9 336,834 + deoD MCAODC_01730 0.88 -0.4 336,835 - deoD MCAODC_01730 0.89 +1.2 336,835 - deoD MCAODC_01730 0.89 -1.4 336,898 + -0.0 336,898 + -0.9 336,898 + +0.2 336,899 - -0.9 336,899 - -0.8 336,938 + -2.8 336,939 - -0.4 336,939 - +0.4 337,016 + +0.2 337,017 - -0.2 337,245 - deoB MCAODC_01735 0.22 +0.4 337,245 - deoB MCAODC_01735 0.22 -1.3 337,314 + deoB MCAODC_01735 0.28 -0.3 337,314 + deoB MCAODC_01735 0.28 +1.1 337,315 - deoB MCAODC_01735 0.28 +0.1 337,406 + deoB MCAODC_01735 0.35 -0.2 337,406 + deoB MCAODC_01735 0.35 +1.0 337,406 + deoB MCAODC_01735 0.35 +0.7 337,407 - deoB MCAODC_01735 0.35 -1.1 337,407 - deoB MCAODC_01735 0.35 +0.6 337,407 - deoB MCAODC_01735 0.35 -1.8 337,407 - deoB MCAODC_01735 0.35 -0.7 337,580 + deoB MCAODC_01735 0.50 -0.2 337,626 - deoB MCAODC_01735 0.53 +0.4 337,690 - deoB MCAODC_01735 0.59 +0.9 337,692 - deoB MCAODC_01735 0.59 -0.6 337,775 + deoB MCAODC_01735 0.66 +0.5 337,851 - deoB MCAODC_01735 0.72 +0.3 337,851 - deoB MCAODC_01735 0.72 +0.2 337,905 + deoB MCAODC_01735 0.76 -0.4 337,905 + deoB MCAODC_01735 0.76 -2.0 338,055 + deoB MCAODC_01735 0.88 -1.4 338,056 - deoB MCAODC_01735 0.88 +0.8 338,148 + -0.5 338,178 + -0.8 338,179 - +3.2 338,179 - +0.3 338,181 + +0.7 338,181 + +0.7 338,181 + +1.0 338,181 + -0.7 338,182 - -0.3 338,182 - +1.5 338,196 + +1.5 338,196 + +1.5 338,197 - -0.1 338,197 - +0.7 338,207 + -0.7 338,241 + -2.0 338,241 + +1.3 338,242 - -2.7 338,244 - -1.1 338,308 - -0.1 338,308 - +0.3 338,308 - -1.2 338,308 - -2.5 338,392 + deoA MCAODC_01740 0.11 +0.7 338,436 - deoA MCAODC_01740 0.14 -0.1 338,540 + deoA MCAODC_01740 0.22 -0.7 338,540 + deoA MCAODC_01740 0.22 +1.8 338,541 - deoA MCAODC_01740 0.22 +0.2 338,573 + deoA MCAODC_01740 0.25 +0.9 338,573 + deoA MCAODC_01740 0.25 -2.8 338,574 - deoA MCAODC_01740 0.25 -0.6 338,574 - deoA MCAODC_01740 0.25 +0.4 338,582 + deoA MCAODC_01740 0.25 +0.4 338,582 + deoA MCAODC_01740 0.25 +0.5 338,626 - deoA MCAODC_01740 0.29 +0.9 338,626 - deoA MCAODC_01740 0.29 -0.1 338,626 - deoA MCAODC_01740 0.29 +0.9 338,650 - deoA MCAODC_01740 0.30 +1.1 338,718 + deoA MCAODC_01740 0.36 +0.7 338,718 + deoA MCAODC_01740 0.36 -0.4 338,718 + deoA MCAODC_01740 0.36 +0.6 338,718 + deoA MCAODC_01740 0.36 +2.1 338,718 + deoA MCAODC_01740 0.36 +2.8 338,718 + deoA MCAODC_01740 0.36 -2.0 338,719 - deoA MCAODC_01740 0.36 +0.1 338,719 - deoA MCAODC_01740 0.36 +0.1 338,719 - deoA MCAODC_01740 0.36 -2.9 338,719 - deoA MCAODC_01740 0.36 +0.7 338,931 - deoA MCAODC_01740 0.52 -0.4 338,940 + deoA MCAODC_01740 0.52 +1.1 339,054 + deoA MCAODC_01740 0.61 +1.9 339,055 - deoA MCAODC_01740 0.61 +1.4 339,132 + deoA MCAODC_01740 0.67 +0.5 339,136 - deoA MCAODC_01740 0.67 +0.8
Or see this region's nucleotide sequence