Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serB and lplA are separated by 105 nucleotides lplA and MCAODC_01725 are separated by 31 nucleotides MCAODC_01725 and deoD are separated by 160 nucleotides
MCAODC_01715: serB - phosphoserine phosphatase, at 332,979 to 333,947
serB
MCAODC_01720: lplA - YtjB family periplasmic protein, at 334,053 to 335,741
lplA
MCAODC_01725: MCAODC_01725 - transcriptional regulator, at 335,773 to 336,036
_01725
MCAODC_01730: deoD - purine-nucleoside phosphorylase, at 336,197 to 336,916
deoD
Position (kb) 334
335
336 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 333.083 kb on - strand, within serB at 333.083 kb on - strand, within serB at 333.205 kb on + strand, within serB at 333.206 kb on - strand, within serB at 333.216 kb on + strand, within serB at 333.217 kb on - strand, within serB at 333.276 kb on + strand, within serB at 333.311 kb on - strand, within serB at 333.391 kb on - strand, within serB at 333.434 kb on + strand, within serB at 333.434 kb on + strand, within serB at 333.435 kb on - strand, within serB at 333.569 kb on + strand, within serB at 333.570 kb on - strand, within serB at 333.570 kb on - strand, within serB at 333.570 kb on - strand, within serB at 333.803 kb on + strand, within serB at 333.803 kb on + strand, within serB at 333.820 kb on + strand, within serB at 333.820 kb on + strand, within serB at 333.821 kb on - strand, within serB at 333.821 kb on - strand, within serB at 333.879 kb on + strand at 333.935 kb on + strand at 333.936 kb on - strand at 333.936 kb on - strand at 333.948 kb on + strand at 333.948 kb on + strand at 333.948 kb on + strand at 333.948 kb on + strand at 333.949 kb on - strand at 333.960 kb on - strand at 334.003 kb on + strand at 334.004 kb on - strand at 334.004 kb on - strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.121 kb on - strand at 334.175 kb on + strand at 334.176 kb on - strand at 334.176 kb on - strand at 334.176 kb on - strand at 334.329 kb on + strand, within lplA at 334.329 kb on + strand, within lplA at 334.329 kb on + strand, within lplA at 334.330 kb on - strand, within lplA at 334.350 kb on - strand, within lplA at 334.424 kb on + strand, within lplA at 334.424 kb on + strand, within lplA at 334.425 kb on - strand, within lplA at 334.425 kb on - strand, within lplA at 334.499 kb on + strand, within lplA at 334.546 kb on + strand, within lplA at 334.582 kb on + strand, within lplA at 334.703 kb on + strand, within lplA at 334.703 kb on + strand, within lplA at 334.704 kb on - strand, within lplA at 334.704 kb on - strand, within lplA at 334.706 kb on + strand, within lplA at 334.706 kb on + strand, within lplA at 334.707 kb on - strand, within lplA at 334.758 kb on + strand, within lplA at 334.793 kb on + strand, within lplA at 334.794 kb on - strand, within lplA at 334.858 kb on + strand, within lplA at 334.858 kb on + strand, within lplA at 334.858 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.916 kb on + strand, within lplA at 334.916 kb on + strand, within lplA at 334.976 kb on + strand, within lplA at 334.977 kb on - strand, within lplA at 335.011 kb on - strand, within lplA at 335.087 kb on + strand, within lplA at 335.202 kb on - strand, within lplA at 335.217 kb on + strand, within lplA at 335.258 kb on + strand, within lplA at 335.258 kb on + strand, within lplA at 335.258 kb on + strand, within lplA at 335.259 kb on - strand, within lplA at 335.259 kb on - strand, within lplA at 335.643 kb on - strand at 335.701 kb on + strand at 335.701 kb on + strand at 335.739 kb on + strand at 335.739 kb on + strand at 335.740 kb on - strand at 335.756 kb on + strand at 335.772 kb on + strand at 335.772 kb on + strand at 335.813 kb on + strand, within MCAODC_01725 at 335.829 kb on + strand, within MCAODC_01725 at 335.830 kb on - strand, within MCAODC_01725 at 335.863 kb on - strand, within MCAODC_01725 at 335.868 kb on - strand, within MCAODC_01725 at 335.882 kb on + strand, within MCAODC_01725 at 335.882 kb on + strand, within MCAODC_01725 at 335.883 kb on - strand, within MCAODC_01725 at 335.887 kb on - strand, within MCAODC_01725 at 335.887 kb on - strand, within MCAODC_01725 at 335.887 kb on - strand, within MCAODC_01725 at 335.894 kb on + strand, within MCAODC_01725 at 335.894 kb on + strand, within MCAODC_01725 at 335.943 kb on + strand, within MCAODC_01725 at 335.944 kb on - strand, within MCAODC_01725 at 336.031 kb on - strand at 336.031 kb on - strand at 336.054 kb on + strand at 336.054 kb on + strand at 336.055 kb on - strand at 336.128 kb on - strand at 336.131 kb on + strand at 336.131 kb on + strand at 336.134 kb on + strand at 336.135 kb on - strand at 336.165 kb on + strand at 336.166 kb on - strand at 336.198 kb on + strand at 336.199 kb on - strand at 336.358 kb on - strand, within deoD at 336.358 kb on - strand, within deoD at 336.396 kb on + strand, within deoD at 336.397 kb on - strand, within deoD at 336.397 kb on - strand, within deoD at 336.500 kb on + strand, within deoD at 336.500 kb on + strand, within deoD at 336.500 kb on + strand, within deoD at 336.501 kb on - strand, within deoD at 336.501 kb on - strand, within deoD at 336.509 kb on - strand, within deoD at 336.554 kb on - strand, within deoD at 336.620 kb on + strand, within deoD at 336.620 kb on + strand, within deoD at 336.620 kb on + strand, within deoD at 336.699 kb on + strand, within deoD at 336.700 kb on - strand, within deoD at 336.700 kb on - strand, within deoD
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 333,083 - serB MCAODC_01715 0.11 -3.3 333,083 - serB MCAODC_01715 0.11 +0.7 333,205 + serB MCAODC_01715 0.23 -3.1 333,206 - serB MCAODC_01715 0.23 -4.0 333,216 + serB MCAODC_01715 0.24 -4.7 333,217 - serB MCAODC_01715 0.25 -2.2 333,276 + serB MCAODC_01715 0.31 +1.7 333,311 - serB MCAODC_01715 0.34 -4.8 333,391 - serB MCAODC_01715 0.43 -2.7 333,434 + serB MCAODC_01715 0.47 -4.8 333,434 + serB MCAODC_01715 0.47 -3.9 333,435 - serB MCAODC_01715 0.47 -5.0 333,569 + serB MCAODC_01715 0.61 -4.5 333,570 - serB MCAODC_01715 0.61 -2.7 333,570 - serB MCAODC_01715 0.61 -5.7 333,570 - serB MCAODC_01715 0.61 -3.3 333,803 + serB MCAODC_01715 0.85 -1.9 333,803 + serB MCAODC_01715 0.85 +1.3 333,820 + serB MCAODC_01715 0.87 -3.4 333,820 + serB MCAODC_01715 0.87 -1.7 333,821 - serB MCAODC_01715 0.87 -2.5 333,821 - serB MCAODC_01715 0.87 -4.5 333,879 + -0.0 333,935 + -3.8 333,936 - -3.2 333,936 - -4.6 333,948 + -3.2 333,948 + -4.8 333,948 + -3.6 333,948 + -2.3 333,949 - -3.7 333,960 - -0.5 334,003 + -2.1 334,004 - -1.9 334,004 - +1.0 334,025 + -0.3 334,025 + +0.6 334,025 + +0.7 334,025 + +0.4 334,025 + -0.8 334,025 + -0.9 334,026 - -0.5 334,026 - +1.4 334,026 - -0.1 334,026 - +0.5 334,026 - +0.8 334,026 - -1.8 334,026 - +0.4 334,121 - +2.5 334,175 + -0.4 334,176 - +0.4 334,176 - +1.3 334,176 - +1.0 334,329 + lplA MCAODC_01720 0.16 -0.2 334,329 + lplA MCAODC_01720 0.16 -0.7 334,329 + lplA MCAODC_01720 0.16 +1.0 334,330 - lplA MCAODC_01720 0.16 +0.5 334,350 - lplA MCAODC_01720 0.18 -0.5 334,424 + lplA MCAODC_01720 0.22 +1.2 334,424 + lplA MCAODC_01720 0.22 +0.9 334,425 - lplA MCAODC_01720 0.22 +0.5 334,425 - lplA MCAODC_01720 0.22 -1.1 334,499 + lplA MCAODC_01720 0.26 +1.0 334,546 + lplA MCAODC_01720 0.29 -0.3 334,582 + lplA MCAODC_01720 0.31 -0.9 334,703 + lplA MCAODC_01720 0.38 -0.1 334,703 + lplA MCAODC_01720 0.38 +1.2 334,704 - lplA MCAODC_01720 0.39 -0.1 334,704 - lplA MCAODC_01720 0.39 -0.5 334,706 + lplA MCAODC_01720 0.39 -1.5 334,706 + lplA MCAODC_01720 0.39 +1.0 334,707 - lplA MCAODC_01720 0.39 +0.9 334,758 + lplA MCAODC_01720 0.42 -2.1 334,793 + lplA MCAODC_01720 0.44 -2.4 334,794 - lplA MCAODC_01720 0.44 +0.6 334,858 + lplA MCAODC_01720 0.48 +0.3 334,858 + lplA MCAODC_01720 0.48 -0.2 334,858 + lplA MCAODC_01720 0.48 -3.3 334,892 + lplA MCAODC_01720 0.50 +0.4 334,892 + lplA MCAODC_01720 0.50 -0.0 334,892 + lplA MCAODC_01720 0.50 -0.3 334,892 + lplA MCAODC_01720 0.50 +0.4 334,916 + lplA MCAODC_01720 0.51 +2.6 334,916 + lplA MCAODC_01720 0.51 +0.9 334,976 + lplA MCAODC_01720 0.55 +1.3 334,977 - lplA MCAODC_01720 0.55 +0.2 335,011 - lplA MCAODC_01720 0.57 -0.5 335,087 + lplA MCAODC_01720 0.61 +1.1 335,202 - lplA MCAODC_01720 0.68 +0.3 335,217 + lplA MCAODC_01720 0.69 -0.5 335,258 + lplA MCAODC_01720 0.71 +2.5 335,258 + lplA MCAODC_01720 0.71 -0.3 335,258 + lplA MCAODC_01720 0.71 -1.0 335,259 - lplA MCAODC_01720 0.71 -0.2 335,259 - lplA MCAODC_01720 0.71 +0.5 335,643 - +0.6 335,701 + -0.4 335,701 + -0.4 335,739 + +0.4 335,739 + -2.9 335,740 - +0.4 335,756 + +0.1 335,772 + -0.2 335,772 + +0.2 335,813 + MCAODC_01725 0.15 -2.8 335,829 + MCAODC_01725 0.21 -0.6 335,830 - MCAODC_01725 0.22 +0.4 335,863 - MCAODC_01725 0.34 -0.2 335,868 - MCAODC_01725 0.36 -0.6 335,882 + MCAODC_01725 0.41 +1.2 335,882 + MCAODC_01725 0.41 +0.6 335,883 - MCAODC_01725 0.42 +1.4 335,887 - MCAODC_01725 0.43 +0.1 335,887 - MCAODC_01725 0.43 +3.2 335,887 - MCAODC_01725 0.43 -0.3 335,894 + MCAODC_01725 0.46 -0.4 335,894 + MCAODC_01725 0.46 -3.1 335,943 + MCAODC_01725 0.64 -1.3 335,944 - MCAODC_01725 0.65 +0.1 336,031 - -1.3 336,031 - +0.2 336,054 + +1.5 336,054 + -1.5 336,055 - +0.4 336,128 - +0.1 336,131 + +0.0 336,131 + +0.7 336,134 + +0.0 336,135 - +1.3 336,165 + +0.1 336,166 - -1.1 336,198 + -0.4 336,199 - -0.2 336,358 - deoD MCAODC_01730 0.22 +0.1 336,358 - deoD MCAODC_01730 0.22 -2.4 336,396 + deoD MCAODC_01730 0.28 +1.8 336,397 - deoD MCAODC_01730 0.28 -0.7 336,397 - deoD MCAODC_01730 0.28 +1.5 336,500 + deoD MCAODC_01730 0.42 -2.9 336,500 + deoD MCAODC_01730 0.42 +1.1 336,500 + deoD MCAODC_01730 0.42 -1.7 336,501 - deoD MCAODC_01730 0.42 -0.2 336,501 - deoD MCAODC_01730 0.42 +1.1 336,509 - deoD MCAODC_01730 0.43 -0.8 336,554 - deoD MCAODC_01730 0.50 -0.9 336,620 + deoD MCAODC_01730 0.59 -2.7 336,620 + deoD MCAODC_01730 0.59 +1.8 336,620 + deoD MCAODC_01730 0.59 -0.3 336,699 + deoD MCAODC_01730 0.70 -0.4 336,700 - deoD MCAODC_01730 0.70 -0.8 336,700 - deoD MCAODC_01730 0.70 +0.1
Or see this region's nucleotide sequence