Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaaJ and yaaA are separated by 69 nucleotides yaaA and yaaX are separated by 152 nucleotides yaaX and thrC are separated by 213 nucleotides
MCAODC_01600: yaaJ - Uncharacterized transporter YaaJ, at 309,214 to 310,644
yaaJ
MCAODC_01605: yaaA - peroxide stress protein YaaA, at 310,714 to 311,490
yaaA
MCAODC_01610: yaaX - Uncharacterized protein YaaX, at 311,643 to 311,939
yaaX
MCAODC_01615: thrC - threonine synthase, at 312,153 to 313,439
thrC
Position (kb) 311
312 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 310.652 kb on + strand at 310.652 kb on + strand at 310.653 kb on - strand at 310.653 kb on - strand at 310.681 kb on - strand at 310.725 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.779 kb on + strand at 310.780 kb on - strand at 310.780 kb on - strand at 310.780 kb on - strand at 310.796 kb on + strand, within yaaA at 310.866 kb on + strand, within yaaA at 310.867 kb on - strand, within yaaA at 310.887 kb on + strand, within yaaA at 310.887 kb on + strand, within yaaA at 310.975 kb on + strand, within yaaA at 310.975 kb on + strand, within yaaA at 310.976 kb on - strand, within yaaA at 310.976 kb on - strand, within yaaA at 311.057 kb on - strand, within yaaA at 311.063 kb on + strand, within yaaA at 311.063 kb on + strand, within yaaA at 311.063 kb on + strand, within yaaA at 311.081 kb on + strand, within yaaA at 311.081 kb on + strand, within yaaA at 311.082 kb on - strand, within yaaA at 311.082 kb on - strand, within yaaA at 311.144 kb on - strand, within yaaA at 311.160 kb on + strand, within yaaA at 311.236 kb on + strand, within yaaA at 311.236 kb on + strand, within yaaA at 311.236 kb on + strand, within yaaA at 311.242 kb on - strand, within yaaA at 311.321 kb on + strand, within yaaA at 311.321 kb on + strand, within yaaA at 311.321 kb on + strand, within yaaA at 311.332 kb on + strand, within yaaA at 311.332 kb on + strand, within yaaA at 311.332 kb on + strand, within yaaA at 311.332 kb on + strand, within yaaA at 311.333 kb on - strand, within yaaA at 311.412 kb on + strand, within yaaA at 311.412 kb on + strand, within yaaA at 311.425 kb on + strand at 311.426 kb on - strand at 311.496 kb on + strand at 311.497 kb on - strand at 311.497 kb on - strand at 311.556 kb on + strand at 311.557 kb on - strand at 311.557 kb on - strand at 311.557 kb on - strand at 311.558 kb on + strand at 311.699 kb on + strand, within yaaX at 311.699 kb on + strand, within yaaX at 311.758 kb on + strand, within yaaX at 311.758 kb on + strand, within yaaX at 311.758 kb on + strand, within yaaX at 311.759 kb on - strand, within yaaX at 311.759 kb on - strand, within yaaX at 311.806 kb on + strand, within yaaX at 311.810 kb on - strand, within yaaX at 311.810 kb on - strand, within yaaX at 311.839 kb on - strand, within yaaX at 311.839 kb on - strand, within yaaX at 311.861 kb on + strand, within yaaX at 311.861 kb on + strand, within yaaX at 311.862 kb on - strand, within yaaX at 311.921 kb on + strand at 311.921 kb on + strand at 311.922 kb on - strand at 311.953 kb on + strand at 311.954 kb on - strand at 311.954 kb on - strand at 311.954 kb on - strand at 311.954 kb on - strand at 312.114 kb on + strand at 312.115 kb on - strand at 312.147 kb on + strand at 312.148 kb on - strand at 312.148 kb on - strand at 312.148 kb on - strand at 312.154 kb on + strand at 312.154 kb on + strand at 312.155 kb on - strand at 312.155 kb on - strand at 312.206 kb on + strand at 312.222 kb on + strand at 312.294 kb on - strand, within thrC at 312.397 kb on + strand, within thrC at 312.457 kb on + strand, within thrC at 312.632 kb on + strand, within thrC at 312.632 kb on + strand, within thrC at 312.632 kb on + strand, within thrC at 312.798 kb on - strand, within thrC at 312.806 kb on + strand, within thrC at 312.807 kb on - strand, within thrC at 312.926 kb on + strand, within thrC at 312.927 kb on - strand, within thrC at 312.927 kb on - strand, within thrC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 310,652 + -0.1 310,652 + +0.1 310,653 - +0.8 310,653 - +0.9 310,681 - +1.1 310,725 + -1.6 310,779 + -1.4 310,779 + -1.7 310,779 + -0.5 310,779 + +0.1 310,779 + -0.5 310,779 + -1.1 310,779 + +0.4 310,779 + +0.7 310,780 - +0.3 310,780 - +2.6 310,780 - -3.8 310,796 + yaaA MCAODC_01605 0.11 +0.1 310,866 + yaaA MCAODC_01605 0.20 +1.2 310,867 - yaaA MCAODC_01605 0.20 +0.6 310,887 + yaaA MCAODC_01605 0.22 +0.6 310,887 + yaaA MCAODC_01605 0.22 +1.0 310,975 + yaaA MCAODC_01605 0.34 -0.0 310,975 + yaaA MCAODC_01605 0.34 -0.9 310,976 - yaaA MCAODC_01605 0.34 +0.2 310,976 - yaaA MCAODC_01605 0.34 -0.9 311,057 - yaaA MCAODC_01605 0.44 -0.8 311,063 + yaaA MCAODC_01605 0.45 -0.1 311,063 + yaaA MCAODC_01605 0.45 -1.9 311,063 + yaaA MCAODC_01605 0.45 +0.7 311,081 + yaaA MCAODC_01605 0.47 -2.5 311,081 + yaaA MCAODC_01605 0.47 +2.3 311,082 - yaaA MCAODC_01605 0.47 -0.2 311,082 - yaaA MCAODC_01605 0.47 -1.8 311,144 - yaaA MCAODC_01605 0.55 -0.7 311,160 + yaaA MCAODC_01605 0.57 +0.2 311,236 + yaaA MCAODC_01605 0.67 -1.2 311,236 + yaaA MCAODC_01605 0.67 -1.3 311,236 + yaaA MCAODC_01605 0.67 +1.5 311,242 - yaaA MCAODC_01605 0.68 +0.8 311,321 + yaaA MCAODC_01605 0.78 -0.1 311,321 + yaaA MCAODC_01605 0.78 +0.2 311,321 + yaaA MCAODC_01605 0.78 -0.9 311,332 + yaaA MCAODC_01605 0.80 +0.5 311,332 + yaaA MCAODC_01605 0.80 -1.5 311,332 + yaaA MCAODC_01605 0.80 -1.5 311,332 + yaaA MCAODC_01605 0.80 +0.4 311,333 - yaaA MCAODC_01605 0.80 +0.4 311,412 + yaaA MCAODC_01605 0.90 -2.4 311,412 + yaaA MCAODC_01605 0.90 -2.5 311,425 + -0.2 311,426 - +1.2 311,496 + -0.3 311,497 - -0.3 311,497 - +1.1 311,556 + +0.5 311,557 - +1.8 311,557 - +1.0 311,557 - -0.1 311,558 + +0.7 311,699 + yaaX MCAODC_01610 0.19 +0.7 311,699 + yaaX MCAODC_01610 0.19 +1.2 311,758 + yaaX MCAODC_01610 0.39 +0.0 311,758 + yaaX MCAODC_01610 0.39 +0.1 311,758 + yaaX MCAODC_01610 0.39 -0.6 311,759 - yaaX MCAODC_01610 0.39 -1.6 311,759 - yaaX MCAODC_01610 0.39 -0.1 311,806 + yaaX MCAODC_01610 0.55 -0.1 311,810 - yaaX MCAODC_01610 0.56 +0.3 311,810 - yaaX MCAODC_01610 0.56 -0.7 311,839 - yaaX MCAODC_01610 0.66 +1.5 311,839 - yaaX MCAODC_01610 0.66 +0.3 311,861 + yaaX MCAODC_01610 0.73 +0.7 311,861 + yaaX MCAODC_01610 0.73 -0.9 311,862 - yaaX MCAODC_01610 0.74 +0.0 311,921 + +2.1 311,921 + -0.2 311,922 - -0.3 311,953 + +0.1 311,954 - -0.1 311,954 - -2.3 311,954 - -1.1 311,954 - +0.0 312,114 + -0.6 312,115 - +1.4 312,147 + -0.3 312,148 - -0.7 312,148 - -0.0 312,148 - +0.1 312,154 + +1.3 312,154 + +2.6 312,155 - +0.2 312,155 - +0.6 312,206 + -6.1 312,222 + -2.6 312,294 - thrC MCAODC_01615 0.11 -3.5 312,397 + thrC MCAODC_01615 0.19 -2.8 312,457 + thrC MCAODC_01615 0.24 -3.8 312,632 + thrC MCAODC_01615 0.37 -5.5 312,632 + thrC MCAODC_01615 0.37 -1.9 312,632 + thrC MCAODC_01615 0.37 -3.9 312,798 - thrC MCAODC_01615 0.50 -3.4 312,806 + thrC MCAODC_01615 0.51 -2.3 312,807 - thrC MCAODC_01615 0.51 -2.9 312,926 + thrC MCAODC_01615 0.60 -3.2 312,927 - thrC MCAODC_01615 0.60 -3.0 312,927 - thrC MCAODC_01615 0.60 -4.2
Or see this region's nucleotide sequence