Strain Fitness in Escherichia coli ECRC101 around MCAODC_01135

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsA and ftsQ overlap by 4 nucleotidesftsQ and ddlB are separated by 1 nucleotidesddlB and murC overlap by 8 nucleotides MCAODC_01130: ftsA - cell division protein FtsA, at 207,361 to 208,623 ftsA MCAODC_01135: ftsQ - cell division protein FtsQ, at 208,620 to 209,450 ftsQ MCAODC_01140: ddlB - D-alanine--D-alanine ligase, at 209,452 to 210,372 ddlB MCAODC_01145: murC - UDP-N-acetylmuramate--L-alanine ligase, at 210,365 to 211,840 murC Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 208.659 kb on - strandat 209.500 kb on - strandat 209.557 kb on - strand, within ddlBat 209.574 kb on - strand, within ddlBat 209.608 kb on - strand, within ddlBat 209.608 kb on - strand, within ddlBat 209.608 kb on - strand, within ddlBat 209.608 kb on - strand, within ddlBat 209.630 kb on - strand, within ddlBat 209.727 kb on - strand, within ddlBat 209.727 kb on - strand, within ddlBat 209.739 kb on - strand, within ddlBat 209.745 kb on - strand, within ddlBat 209.745 kb on - strand, within ddlBat 209.767 kb on - strand, within ddlBat 209.771 kb on - strand, within ddlBat 209.771 kb on - strand, within ddlBat 209.771 kb on - strand, within ddlBat 209.771 kb on - strand, within ddlBat 209.771 kb on - strand, within ddlBat 209.771 kb on - strand, within ddlBat 209.825 kb on - strand, within ddlBat 209.885 kb on - strand, within ddlBat 209.903 kb on - strand, within ddlBat 210.080 kb on - strand, within ddlBat 210.080 kb on - strand, within ddlBat 210.126 kb on - strand, within ddlBat 210.126 kb on - strand, within ddlBat 210.188 kb on - strand, within ddlBat 210.261 kb on - strand, within ddlBat 210.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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208,659 - -0.6
209,500 - +1.5
209,557 - ddlB MCAODC_01140 0.11 +1.1
209,574 - ddlB MCAODC_01140 0.13 +0.8
209,608 - ddlB MCAODC_01140 0.17 -0.5
209,608 - ddlB MCAODC_01140 0.17 +0.7
209,608 - ddlB MCAODC_01140 0.17 -0.6
209,608 - ddlB MCAODC_01140 0.17 +0.4
209,630 - ddlB MCAODC_01140 0.19 -0.8
209,727 - ddlB MCAODC_01140 0.30 +0.8
209,727 - ddlB MCAODC_01140 0.30 +0.6
209,739 - ddlB MCAODC_01140 0.31 -0.4
209,745 - ddlB MCAODC_01140 0.32 +0.3
209,745 - ddlB MCAODC_01140 0.32 +0.7
209,767 - ddlB MCAODC_01140 0.34 +1.1
209,771 - ddlB MCAODC_01140 0.35 -1.3
209,771 - ddlB MCAODC_01140 0.35 -0.0
209,771 - ddlB MCAODC_01140 0.35 -1.3
209,771 - ddlB MCAODC_01140 0.35 -0.7
209,771 - ddlB MCAODC_01140 0.35 +0.4
209,771 - ddlB MCAODC_01140 0.35 +0.1
209,825 - ddlB MCAODC_01140 0.40 +0.5
209,885 - ddlB MCAODC_01140 0.47 +1.8
209,903 - ddlB MCAODC_01140 0.49 +0.2
210,080 - ddlB MCAODC_01140 0.68 -0.2
210,080 - ddlB MCAODC_01140 0.68 +1.8
210,126 - ddlB MCAODC_01140 0.73 +0.3
210,126 - ddlB MCAODC_01140 0.73 +2.4
210,188 - ddlB MCAODC_01140 0.80 +0.1
210,261 - ddlB MCAODC_01140 0.88 -2.6
210,364 - +1.4

Or see this region's nucleotide sequence