Strain Fitness in Escherichia coli ECRC101 around MCAODC_01115

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecA and secM are separated by 61 nucleotidessecM and lpxC are separated by 155 nucleotideslpxC and ftsZ are separated by 100 nucleotides MCAODC_01105: secA - preprotein translocase subunit SecA, at 201,621 to 204,326 secA MCAODC_01110: secM - secA translation cis-regulator SecM, at 204,388 to 204,975 secM MCAODC_01115: lpxC - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 205,131 to 206,048 lpxC MCAODC_01120: ftsZ - cell division protein FtsZ, at 206,149 to 207,300 ftsZ Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.360 kb on - strandat 204.381 kb on - strandat 204.839 kb on - strand, within secMat 204.839 kb on - strand, within secMat 204.890 kb on - strand, within secMat 204.955 kb on - strandat 204.985 kb on + strandat 204.985 kb on + strandat 204.985 kb on + strandat 204.985 kb on + strandat 204.986 kb on - strandat 204.986 kb on - strandat 204.986 kb on - strandat 205.033 kb on + strandat 205.036 kb on - strandat 205.112 kb on + strandat 205.112 kb on + strandat 205.113 kb on - strandat 205.121 kb on - strandat 205.122 kb on + strandat 205.122 kb on + strandat 205.123 kb on - strandat 205.123 kb on - strandat 205.123 kb on - strandat 205.123 kb on - strandat 205.133 kb on - strandat 206.052 kb on - strandat 206.055 kb on - strandat 206.055 kb on - strandat 206.068 kb on - strandat 206.068 kb on - strandat 206.087 kb on - strandat 206.087 kb on - strandat 206.087 kb on - strandat 206.090 kb on - strandat 206.092 kb on - strandat 206.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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204,360 - +1.1
204,381 - -0.6
204,839 - secM MCAODC_01110 0.77 -0.8
204,839 - secM MCAODC_01110 0.77 -1.5
204,890 - secM MCAODC_01110 0.85 +1.8
204,955 - +0.1
204,985 + -1.9
204,985 + -0.0
204,985 + -0.9
204,985 + +0.3
204,986 - -1.7
204,986 - +0.8
204,986 - +0.7
205,033 + +2.7
205,036 - -0.6
205,112 + +0.3
205,112 + +1.1
205,113 - +0.5
205,121 - -1.2
205,122 + -1.8
205,122 + +0.6
205,123 - -0.3
205,123 - +2.1
205,123 - +0.6
205,123 - +0.5
205,133 - +0.3
206,052 - -2.9
206,055 - +1.0
206,055 - +0.9
206,068 - -0.8
206,068 - +0.6
206,087 - +0.7
206,087 - +0.9
206,087 - +0.9
206,090 - +0.7
206,092 - -1.2
206,092 - -1.7

Or see this region's nucleotide sequence