Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt secA and secM are separated by 61 nucleotides secM and lpxC are separated by 155 nucleotides lpxC and ftsZ are separated by 100 nucleotides
MCAODC_01105: secA - preprotein translocase subunit SecA, at 201,621 to 204,326
secA
MCAODC_01110: secM - secA translation cis-regulator SecM, at 204,388 to 204,975
secM
MCAODC_01115: lpxC - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 205,131 to 206,048
lpxC
MCAODC_01120: ftsZ - cell division protein FtsZ, at 206,149 to 207,300
ftsZ
Position (kb)
205
206
207 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 204.360 kb on - strand at 204.381 kb on - strand at 204.839 kb on - strand, within secM at 204.839 kb on - strand, within secM at 204.890 kb on - strand, within secM at 204.955 kb on - strand at 204.985 kb on + strand at 204.985 kb on + strand at 204.985 kb on + strand at 204.985 kb on + strand at 204.986 kb on - strand at 204.986 kb on - strand at 204.986 kb on - strand at 205.033 kb on + strand at 205.036 kb on - strand at 205.112 kb on + strand at 205.112 kb on + strand at 205.113 kb on - strand at 205.121 kb on - strand at 205.122 kb on + strand at 205.122 kb on + strand at 205.123 kb on - strand at 205.123 kb on - strand at 205.123 kb on - strand at 205.123 kb on - strand at 205.133 kb on - strand at 206.052 kb on - strand at 206.055 kb on - strand at 206.055 kb on - strand at 206.068 kb on - strand at 206.068 kb on - strand at 206.087 kb on - strand at 206.087 kb on - strand at 206.087 kb on - strand at 206.090 kb on - strand at 206.092 kb on - strand at 206.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 204,360 - +1.1 204,381 - -0.6 204,839 - secM MCAODC_01110 0.77 -0.8 204,839 - secM MCAODC_01110 0.77 -1.5 204,890 - secM MCAODC_01110 0.85 +1.8 204,955 - +0.1 204,985 + -1.9 204,985 + -0.0 204,985 + -0.9 204,985 + +0.3 204,986 - -1.7 204,986 - +0.8 204,986 - +0.7 205,033 + +2.7 205,036 - -0.6 205,112 + +0.3 205,112 + +1.1 205,113 - +0.5 205,121 - -1.2 205,122 + -1.8 205,122 + +0.6 205,123 - -0.3 205,123 - +2.1 205,123 - +0.6 205,123 - +0.5 205,133 - +0.3 206,052 - -2.9 206,055 - +1.0 206,055 - +0.9 206,068 - -0.8 206,068 - +0.6 206,087 - +0.7 206,087 - +0.9 206,087 - +0.9 206,090 - +0.7 206,092 - -1.2 206,092 - -1.7
Or see this region's nucleotide sequence