Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panC and rpnC are separated by 298 nucleotides rpnC and panD are separated by 273 nucleotides panD and yadE are separated by 3 nucleotides
MCAODC_00920: panC - pantoate--beta-alanine ligase, at 163,824 to 164,675
panC
MCAODC_00925: rpnC - recombination-promoting nuclease RpnC, at 164,974 to 165,870
rpnC
MCAODC_00930: panD - aspartate 1-decarboxylase, at 166,144 to 166,524
panD
MCAODC_00935: yadE - Uncharacterized protein YadE, at 166,528 to 167,757
yadE
Position (kb) 164
165
166 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.238 kb on - strand, within panC at 164.355 kb on - strand, within panC at 164.398 kb on - strand, within panC at 164.498 kb on + strand, within panC at 164.498 kb on + strand, within panC at 164.609 kb on - strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.677 kb on - strand at 164.677 kb on - strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.683 kb on - strand at 164.683 kb on - strand at 164.687 kb on + strand at 164.687 kb on + strand at 164.692 kb on - strand at 164.817 kb on - strand at 164.817 kb on - strand at 164.817 kb on - strand at 164.817 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.825 kb on - strand at 164.825 kb on - strand at 164.873 kb on - strand at 164.883 kb on + strand at 164.883 kb on + strand at 164.912 kb on + strand at 164.912 kb on + strand at 164.916 kb on - strand at 164.948 kb on - strand at 164.955 kb on + strand at 164.956 kb on - strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.988 kb on + strand at 164.989 kb on - strand at 165.007 kb on + strand at 165.049 kb on - strand at 165.151 kb on - strand, within rpnC at 165.151 kb on - strand, within rpnC at 165.188 kb on + strand, within rpnC at 165.188 kb on + strand, within rpnC at 165.188 kb on + strand, within rpnC at 165.189 kb on - strand, within rpnC at 165.189 kb on - strand, within rpnC at 165.210 kb on + strand, within rpnC at 165.211 kb on - strand, within rpnC at 165.228 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.231 kb on - strand, within rpnC at 165.231 kb on - strand, within rpnC at 165.231 kb on - strand, within rpnC at 165.247 kb on + strand, within rpnC at 165.248 kb on - strand, within rpnC at 165.248 kb on - strand, within rpnC at 165.266 kb on + strand, within rpnC at 165.266 kb on + strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.341 kb on - strand, within rpnC at 165.423 kb on + strand, within rpnC at 165.424 kb on - strand, within rpnC at 165.426 kb on - strand, within rpnC at 165.453 kb on - strand, within rpnC at 165.459 kb on + strand, within rpnC at 165.459 kb on + strand, within rpnC at 165.460 kb on - strand, within rpnC at 165.506 kb on + strand, within rpnC at 165.524 kb on - strand, within rpnC at 165.533 kb on - strand, within rpnC at 165.574 kb on + strand, within rpnC at 165.576 kb on + strand, within rpnC at 165.576 kb on + strand, within rpnC at 165.576 kb on + strand, within rpnC at 165.577 kb on - strand, within rpnC at 165.577 kb on - strand, within rpnC at 165.577 kb on - strand, within rpnC at 165.678 kb on - strand, within rpnC at 165.734 kb on - strand, within rpnC at 165.767 kb on - strand, within rpnC at 165.784 kb on + strand at 165.836 kb on - strand at 165.925 kb on + strand at 165.926 kb on - strand at 165.944 kb on - strand at 165.972 kb on + strand at 165.993 kb on - strand at 166.049 kb on + strand at 166.049 kb on + strand at 166.049 kb on + strand at 166.050 kb on - strand at 166.129 kb on - strand at 166.137 kb on - strand at 166.143 kb on + strand at 166.208 kb on - strand, within panD at 166.208 kb on - strand, within panD at 166.278 kb on + strand, within panD at 166.315 kb on + strand, within panD at 166.315 kb on + strand, within panD at 166.315 kb on + strand, within panD at 166.315 kb on + strand, within panD at 166.315 kb on + strand, within panD at 166.315 kb on + strand, within panD at 166.316 kb on - strand, within panD at 166.392 kb on + strand, within panD at 166.512 kb on - strand at 166.585 kb on + strand at 166.586 kb on - strand at 166.591 kb on - strand at 166.591 kb on - strand at 166.592 kb on + strand at 166.592 kb on + strand at 166.592 kb on + strand at 166.593 kb on - strand at 166.593 kb on - strand at 166.606 kb on + strand at 166.606 kb on + strand at 166.630 kb on + strand at 166.631 kb on - strand at 166.631 kb on - strand at 166.701 kb on + strand, within yadE at 166.702 kb on - strand, within yadE at 166.702 kb on - strand, within yadE at 166.810 kb on + strand, within yadE at 166.810 kb on + strand, within yadE at 166.811 kb on - strand, within yadE at 166.834 kb on + strand, within yadE at 166.855 kb on - strand, within yadE at 166.855 kb on - strand, within yadE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 164,145 + panC MCAODC_00920 0.38 -2.7 164,145 + panC MCAODC_00920 0.38 -4.8 164,145 + panC MCAODC_00920 0.38 -1.2 164,145 + panC MCAODC_00920 0.38 -1.4 164,145 + panC MCAODC_00920 0.38 -2.9 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -1.5 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -2.0 164,146 - panC MCAODC_00920 0.38 -3.0 164,146 - panC MCAODC_00920 0.38 -2.0 164,146 - panC MCAODC_00920 0.38 -0.8 164,146 - panC MCAODC_00920 0.38 -1.9 164,146 - panC MCAODC_00920 0.38 -1.7 164,146 - panC MCAODC_00920 0.38 -0.7 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -3.8 164,146 - panC MCAODC_00920 0.38 -1.5 164,146 - panC MCAODC_00920 0.38 -1.8 164,146 - panC MCAODC_00920 0.38 -2.9 164,146 - panC MCAODC_00920 0.38 -4.3 164,238 - panC MCAODC_00920 0.49 -0.0 164,355 - panC MCAODC_00920 0.62 -0.5 164,398 - panC MCAODC_00920 0.67 -0.9 164,498 + panC MCAODC_00920 0.79 -1.3 164,498 + panC MCAODC_00920 0.79 -0.0 164,609 - -1.0 164,676 + +0.4 164,676 + +0.2 164,676 + +1.8 164,676 + -0.1 164,677 - +0.7 164,677 - -0.8 164,680 + -0.3 164,680 + +1.3 164,680 + -0.5 164,680 + -1.4 164,681 - +0.0 164,681 - +0.2 164,681 - +0.3 164,681 - +1.6 164,683 - +0.6 164,683 - +0.4 164,687 + +0.2 164,687 + +2.4 164,692 - +0.4 164,817 - -0.1 164,817 - -0.3 164,817 - +1.6 164,817 - -3.3 164,821 - +1.1 164,821 - +0.4 164,821 - +0.1 164,821 - -0.4 164,821 - -0.5 164,821 - +0.4 164,821 - +0.2 164,821 - -1.5 164,821 - -1.1 164,825 - +0.5 164,825 - -0.2 164,873 - +0.8 164,883 + +0.3 164,883 + +0.2 164,912 + -0.5 164,912 + +3.2 164,916 - +0.3 164,948 - +0.9 164,955 + +0.8 164,956 - +0.8 164,975 + +0.4 164,975 + -0.5 164,975 + +0.6 164,975 + +1.2 164,975 + -0.3 164,975 + -0.0 164,976 - +0.3 164,976 - +0.9 164,976 - +0.7 164,976 - -1.2 164,976 - -2.2 164,976 - +1.3 164,976 - -0.3 164,976 - +0.2 164,988 + +0.3 164,989 - +0.6 165,007 + +0.7 165,049 - +0.7 165,151 - rpnC MCAODC_00925 0.20 +0.8 165,151 - rpnC MCAODC_00925 0.20 -0.5 165,188 + rpnC MCAODC_00925 0.24 +1.0 165,188 + rpnC MCAODC_00925 0.24 +1.0 165,188 + rpnC MCAODC_00925 0.24 -0.1 165,189 - rpnC MCAODC_00925 0.24 -0.0 165,189 - rpnC MCAODC_00925 0.24 +0.4 165,210 + rpnC MCAODC_00925 0.26 +0.8 165,211 - rpnC MCAODC_00925 0.26 +1.0 165,228 + rpnC MCAODC_00925 0.28 -1.9 165,230 + rpnC MCAODC_00925 0.29 +0.3 165,230 + rpnC MCAODC_00925 0.29 -1.4 165,230 + rpnC MCAODC_00925 0.29 +1.4 165,230 + rpnC MCAODC_00925 0.29 -1.4 165,231 - rpnC MCAODC_00925 0.29 -1.0 165,231 - rpnC MCAODC_00925 0.29 -0.3 165,231 - rpnC MCAODC_00925 0.29 -1.6 165,247 + rpnC MCAODC_00925 0.30 +0.6 165,248 - rpnC MCAODC_00925 0.31 -0.6 165,248 - rpnC MCAODC_00925 0.31 +0.7 165,266 + rpnC MCAODC_00925 0.33 -0.2 165,266 + rpnC MCAODC_00925 0.33 +0.4 165,311 - rpnC MCAODC_00925 0.38 -0.8 165,311 - rpnC MCAODC_00925 0.38 -1.8 165,311 - rpnC MCAODC_00925 0.38 +1.6 165,311 - rpnC MCAODC_00925 0.38 +0.1 165,311 - rpnC MCAODC_00925 0.38 +0.2 165,311 - rpnC MCAODC_00925 0.38 +0.9 165,311 - rpnC MCAODC_00925 0.38 -1.1 165,311 - rpnC MCAODC_00925 0.38 -0.1 165,341 - rpnC MCAODC_00925 0.41 -0.1 165,423 + rpnC MCAODC_00925 0.50 -2.2 165,424 - rpnC MCAODC_00925 0.50 +1.3 165,426 - rpnC MCAODC_00925 0.50 -2.0 165,453 - rpnC MCAODC_00925 0.53 +0.9 165,459 + rpnC MCAODC_00925 0.54 +0.8 165,459 + rpnC MCAODC_00925 0.54 -0.0 165,460 - rpnC MCAODC_00925 0.54 +0.1 165,506 + rpnC MCAODC_00925 0.59 +2.0 165,524 - rpnC MCAODC_00925 0.61 +2.0 165,533 - rpnC MCAODC_00925 0.62 -1.2 165,574 + rpnC MCAODC_00925 0.67 +1.0 165,576 + rpnC MCAODC_00925 0.67 +0.7 165,576 + rpnC MCAODC_00925 0.67 -0.6 165,576 + rpnC MCAODC_00925 0.67 -1.9 165,577 - rpnC MCAODC_00925 0.67 +0.1 165,577 - rpnC MCAODC_00925 0.67 -0.4 165,577 - rpnC MCAODC_00925 0.67 +0.4 165,678 - rpnC MCAODC_00925 0.78 -0.8 165,734 - rpnC MCAODC_00925 0.85 +0.2 165,767 - rpnC MCAODC_00925 0.88 -0.4 165,784 + -2.9 165,836 - -0.6 165,925 + -0.2 165,926 - -0.3 165,944 - +0.4 165,972 + -1.4 165,993 - -0.1 166,049 + -0.1 166,049 + +0.4 166,049 + +0.1 166,050 - -2.1 166,129 - -3.3 166,137 - -4.4 166,143 + +0.9 166,208 - panD MCAODC_00930 0.17 -0.2 166,208 - panD MCAODC_00930 0.17 +0.5 166,278 + panD MCAODC_00930 0.35 -1.6 166,315 + panD MCAODC_00930 0.45 -1.6 166,315 + panD MCAODC_00930 0.45 -4.4 166,315 + panD MCAODC_00930 0.45 -1.7 166,315 + panD MCAODC_00930 0.45 -1.8 166,315 + panD MCAODC_00930 0.45 -3.4 166,315 + panD MCAODC_00930 0.45 +0.6 166,316 - panD MCAODC_00930 0.45 -0.8 166,392 + panD MCAODC_00930 0.65 -1.2 166,512 - -0.8 166,585 + +1.3 166,586 - +0.6 166,591 - -0.3 166,591 - +0.1 166,592 + -2.3 166,592 + -2.1 166,592 + -1.1 166,593 - -0.9 166,593 - +0.2 166,606 + -1.5 166,606 + +0.4 166,630 + +0.4 166,631 - +0.3 166,631 - -0.1 166,701 + yadE MCAODC_00935 0.14 +1.4 166,702 - yadE MCAODC_00935 0.14 -2.1 166,702 - yadE MCAODC_00935 0.14 +0.5 166,810 + yadE MCAODC_00935 0.23 -0.9 166,810 + yadE MCAODC_00935 0.23 -0.8 166,811 - yadE MCAODC_00935 0.23 +2.2 166,834 + yadE MCAODC_00935 0.25 +0.2 166,855 - yadE MCAODC_00935 0.27 +3.3 166,855 - yadE MCAODC_00935 0.27 -1.2
Or see this region's nucleotide sequence