Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and panB are separated by 134 nucleotides panB and panC are separated by 11 nucleotides panC and rpnC are separated by 298 nucleotides
MCAODC_00910: fimA - fimbrial protein, at 161,774 to 162,883
fimA
MCAODC_00915: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 163,018 to 163,812
panB
MCAODC_00920: panC - pantoate--beta-alanine ligase, at 163,824 to 164,675
panC
MCAODC_00925: rpnC - recombination-promoting nuclease RpnC, at 164,974 to 165,870
rpnC
Position (kb) 163
164
165 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 162.871 kb on + strand at 162.875 kb on + strand at 162.881 kb on + strand at 162.881 kb on + strand at 162.882 kb on - strand at 162.885 kb on + strand at 162.885 kb on + strand at 162.947 kb on + strand at 162.947 kb on + strand at 162.947 kb on + strand at 162.947 kb on + strand at 162.948 kb on - strand at 162.950 kb on + strand at 162.951 kb on - strand at 162.978 kb on + strand at 162.978 kb on + strand at 162.978 kb on + strand at 162.979 kb on - strand at 162.979 kb on - strand at 163.013 kb on - strand at 163.054 kb on - strand at 163.054 kb on - strand at 163.097 kb on - strand at 163.097 kb on - strand at 163.185 kb on + strand, within panB at 163.185 kb on + strand, within panB at 163.185 kb on + strand, within panB at 163.186 kb on - strand, within panB at 163.186 kb on - strand, within panB at 163.224 kb on + strand, within panB at 163.285 kb on + strand, within panB at 163.285 kb on + strand, within panB at 163.285 kb on + strand, within panB at 163.341 kb on + strand, within panB at 163.415 kb on + strand, within panB at 163.427 kb on + strand, within panB at 163.427 kb on + strand, within panB at 163.433 kb on + strand, within panB at 163.466 kb on - strand, within panB at 163.521 kb on - strand, within panB at 163.526 kb on + strand, within panB at 163.526 kb on + strand, within panB at 163.527 kb on - strand, within panB at 163.587 kb on + strand, within panB at 163.587 kb on + strand, within panB at 163.587 kb on + strand, within panB at 163.591 kb on - strand, within panB at 163.756 kb on + strand at 163.756 kb on + strand at 163.756 kb on + strand at 163.756 kb on + strand at 163.756 kb on + strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.759 kb on - strand at 163.759 kb on - strand at 163.759 kb on - strand at 163.829 kb on - strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.908 kb on - strand at 163.908 kb on - strand at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.238 kb on - strand, within panC at 164.355 kb on - strand, within panC at 164.398 kb on - strand, within panC at 164.498 kb on + strand, within panC at 164.498 kb on + strand, within panC at 164.609 kb on - strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.677 kb on - strand at 164.677 kb on - strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.683 kb on - strand at 164.683 kb on - strand at 164.687 kb on + strand at 164.687 kb on + strand at 164.692 kb on - strand at 164.817 kb on - strand at 164.817 kb on - strand at 164.817 kb on - strand at 164.817 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.821 kb on - strand at 164.825 kb on - strand at 164.825 kb on - strand at 164.873 kb on - strand at 164.883 kb on + strand at 164.883 kb on + strand at 164.912 kb on + strand at 164.912 kb on + strand at 164.916 kb on - strand at 164.948 kb on - strand at 164.955 kb on + strand at 164.956 kb on - strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.975 kb on + strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.976 kb on - strand at 164.988 kb on + strand at 164.989 kb on - strand at 165.007 kb on + strand at 165.049 kb on - strand at 165.151 kb on - strand, within rpnC at 165.151 kb on - strand, within rpnC at 165.188 kb on + strand, within rpnC at 165.188 kb on + strand, within rpnC at 165.188 kb on + strand, within rpnC at 165.189 kb on - strand, within rpnC at 165.189 kb on - strand, within rpnC at 165.210 kb on + strand, within rpnC at 165.211 kb on - strand, within rpnC at 165.228 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.230 kb on + strand, within rpnC at 165.231 kb on - strand, within rpnC at 165.231 kb on - strand, within rpnC at 165.231 kb on - strand, within rpnC at 165.247 kb on + strand, within rpnC at 165.248 kb on - strand, within rpnC at 165.248 kb on - strand, within rpnC at 165.266 kb on + strand, within rpnC at 165.266 kb on + strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.311 kb on - strand, within rpnC at 165.341 kb on - strand, within rpnC at 165.423 kb on + strand, within rpnC at 165.424 kb on - strand, within rpnC at 165.426 kb on - strand, within rpnC at 165.453 kb on - strand, within rpnC at 165.459 kb on + strand, within rpnC at 165.459 kb on + strand, within rpnC at 165.460 kb on - strand, within rpnC at 165.506 kb on + strand, within rpnC at 165.524 kb on - strand, within rpnC at 165.533 kb on - strand, within rpnC at 165.574 kb on + strand, within rpnC at 165.576 kb on + strand, within rpnC at 165.576 kb on + strand, within rpnC at 165.576 kb on + strand, within rpnC at 165.577 kb on - strand, within rpnC at 165.577 kb on - strand, within rpnC at 165.577 kb on - strand, within rpnC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 162,871 + +0.1 162,875 + +0.6 162,881 + +1.9 162,881 + +1.4 162,882 - -0.3 162,885 + -1.0 162,885 + +1.1 162,947 + -1.8 162,947 + -1.7 162,947 + +1.2 162,947 + +0.7 162,948 - +0.1 162,950 + -0.6 162,951 - +0.9 162,978 + +0.5 162,978 + +0.8 162,978 + -3.0 162,979 - +1.1 162,979 - -0.7 163,013 - -1.1 163,054 - +0.3 163,054 - -3.1 163,097 - -1.1 163,097 - -4.1 163,185 + panB MCAODC_00915 0.21 -1.8 163,185 + panB MCAODC_00915 0.21 -2.1 163,185 + panB MCAODC_00915 0.21 -1.7 163,186 - panB MCAODC_00915 0.21 +0.5 163,186 - panB MCAODC_00915 0.21 +0.5 163,224 + panB MCAODC_00915 0.26 -0.8 163,285 + panB MCAODC_00915 0.34 -1.2 163,285 + panB MCAODC_00915 0.34 -4.1 163,285 + panB MCAODC_00915 0.34 -1.6 163,341 + panB MCAODC_00915 0.41 -1.1 163,415 + panB MCAODC_00915 0.50 -1.8 163,427 + panB MCAODC_00915 0.51 -3.8 163,427 + panB MCAODC_00915 0.51 -1.4 163,433 + panB MCAODC_00915 0.52 -3.2 163,466 - panB MCAODC_00915 0.56 -1.3 163,521 - panB MCAODC_00915 0.63 -1.4 163,526 + panB MCAODC_00915 0.64 +0.2 163,526 + panB MCAODC_00915 0.64 -2.4 163,527 - panB MCAODC_00915 0.64 -0.4 163,587 + panB MCAODC_00915 0.72 -2.9 163,587 + panB MCAODC_00915 0.72 -4.2 163,587 + panB MCAODC_00915 0.72 -2.8 163,591 - panB MCAODC_00915 0.72 -0.0 163,756 + -2.2 163,756 + +0.5 163,756 + -1.3 163,756 + -0.3 163,756 + -2.5 163,757 - -0.0 163,757 - -1.5 163,757 - -1.6 163,757 - +0.3 163,757 - -2.2 163,757 - -3.0 163,757 - -2.1 163,757 - -3.8 163,757 - -1.1 163,758 + -4.8 163,758 + +0.1 163,758 + -2.0 163,758 + +1.3 163,758 + +0.4 163,758 + -1.3 163,758 + -1.5 163,758 + -1.8 163,759 - -1.6 163,759 - -2.9 163,759 - -1.6 163,829 - -2.3 163,907 + -3.8 163,907 + -3.6 163,907 + -1.3 163,907 + -2.9 163,907 + -2.8 163,907 + -4.4 163,908 - -1.3 163,908 - +0.1 164,145 + panC MCAODC_00920 0.38 -2.7 164,145 + panC MCAODC_00920 0.38 -4.8 164,145 + panC MCAODC_00920 0.38 -1.2 164,145 + panC MCAODC_00920 0.38 -1.4 164,145 + panC MCAODC_00920 0.38 -2.9 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -1.5 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -2.0 164,146 - panC MCAODC_00920 0.38 -3.0 164,146 - panC MCAODC_00920 0.38 -2.0 164,146 - panC MCAODC_00920 0.38 -0.8 164,146 - panC MCAODC_00920 0.38 -1.9 164,146 - panC MCAODC_00920 0.38 -1.7 164,146 - panC MCAODC_00920 0.38 -0.7 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -3.8 164,146 - panC MCAODC_00920 0.38 -1.5 164,146 - panC MCAODC_00920 0.38 -1.8 164,146 - panC MCAODC_00920 0.38 -2.9 164,146 - panC MCAODC_00920 0.38 -4.3 164,238 - panC MCAODC_00920 0.49 -0.0 164,355 - panC MCAODC_00920 0.62 -0.5 164,398 - panC MCAODC_00920 0.67 -0.9 164,498 + panC MCAODC_00920 0.79 -1.3 164,498 + panC MCAODC_00920 0.79 -0.0 164,609 - -1.0 164,676 + +0.4 164,676 + +0.2 164,676 + +1.8 164,676 + -0.1 164,677 - +0.7 164,677 - -0.8 164,680 + -0.3 164,680 + +1.3 164,680 + -0.5 164,680 + -1.4 164,681 - +0.0 164,681 - +0.2 164,681 - +0.3 164,681 - +1.6 164,683 - +0.6 164,683 - +0.4 164,687 + +0.2 164,687 + +2.4 164,692 - +0.4 164,817 - -0.1 164,817 - -0.3 164,817 - +1.6 164,817 - -3.3 164,821 - +1.1 164,821 - +0.4 164,821 - +0.1 164,821 - -0.4 164,821 - -0.5 164,821 - +0.4 164,821 - +0.2 164,821 - -1.5 164,821 - -1.1 164,825 - +0.5 164,825 - -0.2 164,873 - +0.8 164,883 + +0.3 164,883 + +0.2 164,912 + -0.5 164,912 + +3.2 164,916 - +0.3 164,948 - +0.9 164,955 + +0.8 164,956 - +0.8 164,975 + +0.4 164,975 + -0.5 164,975 + +0.6 164,975 + +1.2 164,975 + -0.3 164,975 + -0.0 164,976 - +0.3 164,976 - +0.9 164,976 - +0.7 164,976 - -1.2 164,976 - -2.2 164,976 - +1.3 164,976 - -0.3 164,976 - +0.2 164,988 + +0.3 164,989 - +0.6 165,007 + +0.7 165,049 - +0.7 165,151 - rpnC MCAODC_00925 0.20 +0.8 165,151 - rpnC MCAODC_00925 0.20 -0.5 165,188 + rpnC MCAODC_00925 0.24 +1.0 165,188 + rpnC MCAODC_00925 0.24 +1.0 165,188 + rpnC MCAODC_00925 0.24 -0.1 165,189 - rpnC MCAODC_00925 0.24 -0.0 165,189 - rpnC MCAODC_00925 0.24 +0.4 165,210 + rpnC MCAODC_00925 0.26 +0.8 165,211 - rpnC MCAODC_00925 0.26 +1.0 165,228 + rpnC MCAODC_00925 0.28 -1.9 165,230 + rpnC MCAODC_00925 0.29 +0.3 165,230 + rpnC MCAODC_00925 0.29 -1.4 165,230 + rpnC MCAODC_00925 0.29 +1.4 165,230 + rpnC MCAODC_00925 0.29 -1.4 165,231 - rpnC MCAODC_00925 0.29 -1.0 165,231 - rpnC MCAODC_00925 0.29 -0.3 165,231 - rpnC MCAODC_00925 0.29 -1.6 165,247 + rpnC MCAODC_00925 0.30 +0.6 165,248 - rpnC MCAODC_00925 0.31 -0.6 165,248 - rpnC MCAODC_00925 0.31 +0.7 165,266 + rpnC MCAODC_00925 0.33 -0.2 165,266 + rpnC MCAODC_00925 0.33 +0.4 165,311 - rpnC MCAODC_00925 0.38 -0.8 165,311 - rpnC MCAODC_00925 0.38 -1.8 165,311 - rpnC MCAODC_00925 0.38 +1.6 165,311 - rpnC MCAODC_00925 0.38 +0.1 165,311 - rpnC MCAODC_00925 0.38 +0.2 165,311 - rpnC MCAODC_00925 0.38 +0.9 165,311 - rpnC MCAODC_00925 0.38 -1.1 165,311 - rpnC MCAODC_00925 0.38 -0.1 165,341 - rpnC MCAODC_00925 0.41 -0.1 165,423 + rpnC MCAODC_00925 0.50 -2.2 165,424 - rpnC MCAODC_00925 0.50 +1.3 165,426 - rpnC MCAODC_00925 0.50 -2.0 165,453 - rpnC MCAODC_00925 0.53 +0.9 165,459 + rpnC MCAODC_00925 0.54 +0.8 165,459 + rpnC MCAODC_00925 0.54 -0.0 165,460 - rpnC MCAODC_00925 0.54 +0.1 165,506 + rpnC MCAODC_00925 0.59 +2.0 165,524 - rpnC MCAODC_00925 0.61 +2.0 165,533 - rpnC MCAODC_00925 0.62 -1.2 165,574 + rpnC MCAODC_00925 0.67 +1.0 165,576 + rpnC MCAODC_00925 0.67 +0.7 165,576 + rpnC MCAODC_00925 0.67 -0.6 165,576 + rpnC MCAODC_00925 0.67 -1.9 165,577 - rpnC MCAODC_00925 0.67 +0.1 165,577 - rpnC MCAODC_00925 0.67 -0.4 165,577 - rpnC MCAODC_00925 0.67 +0.4
Or see this region's nucleotide sequence