Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and panB are separated by 134 nucleotides panB and panC are separated by 11 nucleotides
MCAODC_00910: fimA - fimbrial protein, at 161,774 to 162,883
fimA
MCAODC_00915: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 163,018 to 163,812
panB
MCAODC_00920: panC - pantoate--beta-alanine ligase, at 163,824 to 164,675
panC
Position (kb) 163
164 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 162.031 kb on + strand, within fimA at 162.055 kb on + strand, within fimA at 162.072 kb on + strand, within fimA at 162.075 kb on + strand, within fimA at 162.083 kb on + strand, within fimA at 162.083 kb on + strand, within fimA at 162.083 kb on + strand, within fimA at 162.084 kb on - strand, within fimA at 162.084 kb on - strand, within fimA at 162.109 kb on - strand, within fimA at 162.137 kb on + strand, within fimA at 162.138 kb on - strand, within fimA at 162.138 kb on - strand, within fimA at 162.138 kb on - strand, within fimA at 162.151 kb on - strand, within fimA at 162.151 kb on - strand, within fimA at 162.151 kb on - strand, within fimA at 162.153 kb on + strand, within fimA at 162.160 kb on + strand, within fimA at 162.189 kb on + strand, within fimA at 162.190 kb on - strand, within fimA at 162.190 kb on - strand, within fimA at 162.190 kb on - strand, within fimA at 162.196 kb on - strand, within fimA at 162.225 kb on + strand, within fimA at 162.251 kb on + strand, within fimA at 162.252 kb on - strand, within fimA at 162.252 kb on - strand, within fimA at 162.252 kb on - strand, within fimA at 162.252 kb on - strand, within fimA at 162.257 kb on + strand, within fimA at 162.257 kb on + strand, within fimA at 162.257 kb on + strand, within fimA at 162.258 kb on - strand, within fimA at 162.280 kb on - strand, within fimA at 162.297 kb on + strand, within fimA at 162.297 kb on + strand, within fimA at 162.310 kb on + strand, within fimA at 162.368 kb on + strand, within fimA at 162.368 kb on + strand, within fimA at 162.368 kb on + strand, within fimA at 162.368 kb on + strand, within fimA at 162.368 kb on + strand, within fimA at 162.369 kb on - strand, within fimA at 162.369 kb on - strand, within fimA at 162.369 kb on - strand, within fimA at 162.369 kb on - strand, within fimA at 162.370 kb on + strand, within fimA at 162.370 kb on + strand, within fimA at 162.370 kb on + strand, within fimA at 162.370 kb on + strand, within fimA at 162.370 kb on + strand, within fimA at 162.370 kb on + strand, within fimA at 162.371 kb on - strand, within fimA at 162.371 kb on - strand, within fimA at 162.371 kb on - strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.372 kb on + strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.373 kb on - strand, within fimA at 162.376 kb on + strand, within fimA at 162.376 kb on + strand, within fimA at 162.377 kb on - strand, within fimA at 162.377 kb on - strand, within fimA at 162.405 kb on - strand, within fimA at 162.405 kb on - strand, within fimA at 162.405 kb on - strand, within fimA at 162.518 kb on + strand, within fimA at 162.518 kb on + strand, within fimA at 162.518 kb on + strand, within fimA at 162.518 kb on + strand, within fimA at 162.519 kb on - strand, within fimA at 162.519 kb on - strand, within fimA at 162.519 kb on - strand, within fimA at 162.519 kb on - strand, within fimA at 162.519 kb on - strand, within fimA at 162.565 kb on + strand, within fimA at 162.578 kb on + strand, within fimA at 162.584 kb on + strand, within fimA at 162.585 kb on - strand, within fimA at 162.585 kb on - strand, within fimA at 162.592 kb on + strand, within fimA at 162.604 kb on + strand, within fimA at 162.649 kb on + strand, within fimA at 162.682 kb on - strand, within fimA at 162.698 kb on + strand, within fimA at 162.699 kb on - strand, within fimA at 162.706 kb on + strand, within fimA at 162.714 kb on + strand, within fimA at 162.715 kb on - strand, within fimA at 162.720 kb on + strand, within fimA at 162.721 kb on - strand, within fimA at 162.733 kb on + strand, within fimA at 162.734 kb on - strand, within fimA at 162.749 kb on + strand, within fimA at 162.750 kb on - strand, within fimA at 162.786 kb on + strand at 162.794 kb on - strand at 162.823 kb on + strand at 162.871 kb on + strand at 162.875 kb on + strand at 162.881 kb on + strand at 162.881 kb on + strand at 162.882 kb on - strand at 162.885 kb on + strand at 162.885 kb on + strand at 162.947 kb on + strand at 162.947 kb on + strand at 162.947 kb on + strand at 162.947 kb on + strand at 162.948 kb on - strand at 162.950 kb on + strand at 162.951 kb on - strand at 162.978 kb on + strand at 162.978 kb on + strand at 162.978 kb on + strand at 162.979 kb on - strand at 162.979 kb on - strand at 163.013 kb on - strand at 163.054 kb on - strand at 163.054 kb on - strand at 163.097 kb on - strand at 163.097 kb on - strand at 163.185 kb on + strand, within panB at 163.185 kb on + strand, within panB at 163.185 kb on + strand, within panB at 163.186 kb on - strand, within panB at 163.186 kb on - strand, within panB at 163.224 kb on + strand, within panB at 163.285 kb on + strand, within panB at 163.285 kb on + strand, within panB at 163.285 kb on + strand, within panB at 163.341 kb on + strand, within panB at 163.415 kb on + strand, within panB at 163.427 kb on + strand, within panB at 163.427 kb on + strand, within panB at 163.433 kb on + strand, within panB at 163.466 kb on - strand, within panB at 163.521 kb on - strand, within panB at 163.526 kb on + strand, within panB at 163.526 kb on + strand, within panB at 163.527 kb on - strand, within panB at 163.587 kb on + strand, within panB at 163.587 kb on + strand, within panB at 163.587 kb on + strand, within panB at 163.591 kb on - strand, within panB at 163.756 kb on + strand at 163.756 kb on + strand at 163.756 kb on + strand at 163.756 kb on + strand at 163.756 kb on + strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.757 kb on - strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.758 kb on + strand at 163.759 kb on - strand at 163.759 kb on - strand at 163.759 kb on - strand at 163.829 kb on - strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.907 kb on + strand at 163.908 kb on - strand at 163.908 kb on - strand at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.145 kb on + strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.146 kb on - strand, within panC at 164.238 kb on - strand, within panC at 164.355 kb on - strand, within panC at 164.398 kb on - strand, within panC at 164.498 kb on + strand, within panC at 164.498 kb on + strand, within panC at 164.609 kb on - strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.676 kb on + strand at 164.677 kb on - strand at 164.677 kb on - strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.680 kb on + strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.681 kb on - strand at 164.683 kb on - strand at 164.683 kb on - strand at 164.687 kb on + strand at 164.687 kb on + strand at 164.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 162,031 + fimA MCAODC_00910 0.23 +0.8 162,055 + fimA MCAODC_00910 0.25 +1.4 162,072 + fimA MCAODC_00910 0.27 -1.1 162,075 + fimA MCAODC_00910 0.27 +0.4 162,083 + fimA MCAODC_00910 0.28 -2.6 162,083 + fimA MCAODC_00910 0.28 +0.0 162,083 + fimA MCAODC_00910 0.28 -0.1 162,084 - fimA MCAODC_00910 0.28 +0.1 162,084 - fimA MCAODC_00910 0.28 +0.1 162,109 - fimA MCAODC_00910 0.30 +0.7 162,137 + fimA MCAODC_00910 0.33 +1.7 162,138 - fimA MCAODC_00910 0.33 +1.1 162,138 - fimA MCAODC_00910 0.33 -1.0 162,138 - fimA MCAODC_00910 0.33 +1.1 162,151 - fimA MCAODC_00910 0.34 -0.0 162,151 - fimA MCAODC_00910 0.34 -0.2 162,151 - fimA MCAODC_00910 0.34 -0.8 162,153 + fimA MCAODC_00910 0.34 +0.3 162,160 + fimA MCAODC_00910 0.35 +0.3 162,189 + fimA MCAODC_00910 0.37 +1.1 162,190 - fimA MCAODC_00910 0.37 -0.4 162,190 - fimA MCAODC_00910 0.37 -0.0 162,190 - fimA MCAODC_00910 0.37 -2.2 162,196 - fimA MCAODC_00910 0.38 -1.1 162,225 + fimA MCAODC_00910 0.41 +0.0 162,251 + fimA MCAODC_00910 0.43 +2.5 162,252 - fimA MCAODC_00910 0.43 +1.0 162,252 - fimA MCAODC_00910 0.43 +0.6 162,252 - fimA MCAODC_00910 0.43 +1.1 162,252 - fimA MCAODC_00910 0.43 -1.4 162,257 + fimA MCAODC_00910 0.44 +0.7 162,257 + fimA MCAODC_00910 0.44 +0.8 162,257 + fimA MCAODC_00910 0.44 +0.6 162,258 - fimA MCAODC_00910 0.44 +0.2 162,280 - fimA MCAODC_00910 0.46 +0.4 162,297 + fimA MCAODC_00910 0.47 +0.2 162,297 + fimA MCAODC_00910 0.47 -2.9 162,310 + fimA MCAODC_00910 0.48 +0.3 162,368 + fimA MCAODC_00910 0.54 -0.2 162,368 + fimA MCAODC_00910 0.54 -3.5 162,368 + fimA MCAODC_00910 0.54 -0.2 162,368 + fimA MCAODC_00910 0.54 +0.1 162,368 + fimA MCAODC_00910 0.54 +0.2 162,369 - fimA MCAODC_00910 0.54 -1.3 162,369 - fimA MCAODC_00910 0.54 -3.1 162,369 - fimA MCAODC_00910 0.54 +0.5 162,369 - fimA MCAODC_00910 0.54 +0.7 162,370 + fimA MCAODC_00910 0.54 +1.1 162,370 + fimA MCAODC_00910 0.54 +0.6 162,370 + fimA MCAODC_00910 0.54 +0.7 162,370 + fimA MCAODC_00910 0.54 -0.7 162,370 + fimA MCAODC_00910 0.54 -1.8 162,370 + fimA MCAODC_00910 0.54 +1.0 162,371 - fimA MCAODC_00910 0.54 -0.5 162,371 - fimA MCAODC_00910 0.54 -0.3 162,371 - fimA MCAODC_00910 0.54 +1.3 162,372 + fimA MCAODC_00910 0.54 -0.7 162,372 + fimA MCAODC_00910 0.54 +1.4 162,372 + fimA MCAODC_00910 0.54 -0.2 162,372 + fimA MCAODC_00910 0.54 -0.7 162,372 + fimA MCAODC_00910 0.54 +1.6 162,372 + fimA MCAODC_00910 0.54 -0.5 162,372 + fimA MCAODC_00910 0.54 -0.1 162,372 + fimA MCAODC_00910 0.54 -0.8 162,372 + fimA MCAODC_00910 0.54 +0.8 162,372 + fimA MCAODC_00910 0.54 +0.7 162,372 + fimA MCAODC_00910 0.54 +0.6 162,372 + fimA MCAODC_00910 0.54 +0.8 162,372 + fimA MCAODC_00910 0.54 +0.6 162,373 - fimA MCAODC_00910 0.54 +0.6 162,373 - fimA MCAODC_00910 0.54 -1.8 162,373 - fimA MCAODC_00910 0.54 -0.0 162,373 - fimA MCAODC_00910 0.54 +0.8 162,373 - fimA MCAODC_00910 0.54 +0.7 162,373 - fimA MCAODC_00910 0.54 -2.9 162,373 - fimA MCAODC_00910 0.54 -0.0 162,373 - fimA MCAODC_00910 0.54 +2.2 162,373 - fimA MCAODC_00910 0.54 +0.6 162,373 - fimA MCAODC_00910 0.54 +0.2 162,373 - fimA MCAODC_00910 0.54 +0.7 162,373 - fimA MCAODC_00910 0.54 +2.5 162,373 - fimA MCAODC_00910 0.54 +0.4 162,373 - fimA MCAODC_00910 0.54 +0.1 162,376 + fimA MCAODC_00910 0.54 -0.7 162,376 + fimA MCAODC_00910 0.54 +0.0 162,377 - fimA MCAODC_00910 0.54 +1.3 162,377 - fimA MCAODC_00910 0.54 -0.7 162,405 - fimA MCAODC_00910 0.57 +0.3 162,405 - fimA MCAODC_00910 0.57 +0.8 162,405 - fimA MCAODC_00910 0.57 +0.7 162,518 + fimA MCAODC_00910 0.67 +0.9 162,518 + fimA MCAODC_00910 0.67 -1.0 162,518 + fimA MCAODC_00910 0.67 +0.9 162,518 + fimA MCAODC_00910 0.67 +0.2 162,519 - fimA MCAODC_00910 0.67 -3.1 162,519 - fimA MCAODC_00910 0.67 +1.7 162,519 - fimA MCAODC_00910 0.67 -0.3 162,519 - fimA MCAODC_00910 0.67 +0.4 162,519 - fimA MCAODC_00910 0.67 -1.0 162,565 + fimA MCAODC_00910 0.71 +0.1 162,578 + fimA MCAODC_00910 0.72 +2.3 162,584 + fimA MCAODC_00910 0.73 +0.3 162,585 - fimA MCAODC_00910 0.73 +1.5 162,585 - fimA MCAODC_00910 0.73 -0.3 162,592 + fimA MCAODC_00910 0.74 +0.2 162,604 + fimA MCAODC_00910 0.75 -0.0 162,649 + fimA MCAODC_00910 0.79 +0.4 162,682 - fimA MCAODC_00910 0.82 -2.4 162,698 + fimA MCAODC_00910 0.83 +0.5 162,699 - fimA MCAODC_00910 0.83 -0.2 162,706 + fimA MCAODC_00910 0.84 -1.9 162,714 + fimA MCAODC_00910 0.85 -2.6 162,715 - fimA MCAODC_00910 0.85 +0.7 162,720 + fimA MCAODC_00910 0.85 -1.2 162,721 - fimA MCAODC_00910 0.85 -1.6 162,733 + fimA MCAODC_00910 0.86 +0.4 162,734 - fimA MCAODC_00910 0.86 +0.2 162,749 + fimA MCAODC_00910 0.88 +0.7 162,750 - fimA MCAODC_00910 0.88 -1.0 162,786 + +1.2 162,794 - -4.6 162,823 + -0.5 162,871 + +0.1 162,875 + +0.6 162,881 + +1.9 162,881 + +1.4 162,882 - -0.3 162,885 + -1.0 162,885 + +1.1 162,947 + -1.8 162,947 + -1.7 162,947 + +1.2 162,947 + +0.7 162,948 - +0.1 162,950 + -0.6 162,951 - +0.9 162,978 + +0.5 162,978 + +0.8 162,978 + -3.0 162,979 - +1.1 162,979 - -0.7 163,013 - -1.1 163,054 - +0.3 163,054 - -3.1 163,097 - -1.1 163,097 - -4.1 163,185 + panB MCAODC_00915 0.21 -1.8 163,185 + panB MCAODC_00915 0.21 -2.1 163,185 + panB MCAODC_00915 0.21 -1.7 163,186 - panB MCAODC_00915 0.21 +0.5 163,186 - panB MCAODC_00915 0.21 +0.5 163,224 + panB MCAODC_00915 0.26 -0.8 163,285 + panB MCAODC_00915 0.34 -1.2 163,285 + panB MCAODC_00915 0.34 -4.1 163,285 + panB MCAODC_00915 0.34 -1.6 163,341 + panB MCAODC_00915 0.41 -1.1 163,415 + panB MCAODC_00915 0.50 -1.8 163,427 + panB MCAODC_00915 0.51 -3.8 163,427 + panB MCAODC_00915 0.51 -1.4 163,433 + panB MCAODC_00915 0.52 -3.2 163,466 - panB MCAODC_00915 0.56 -1.3 163,521 - panB MCAODC_00915 0.63 -1.4 163,526 + panB MCAODC_00915 0.64 +0.2 163,526 + panB MCAODC_00915 0.64 -2.4 163,527 - panB MCAODC_00915 0.64 -0.4 163,587 + panB MCAODC_00915 0.72 -2.9 163,587 + panB MCAODC_00915 0.72 -4.2 163,587 + panB MCAODC_00915 0.72 -2.8 163,591 - panB MCAODC_00915 0.72 -0.0 163,756 + -2.2 163,756 + +0.5 163,756 + -1.3 163,756 + -0.3 163,756 + -2.5 163,757 - -0.0 163,757 - -1.5 163,757 - -1.6 163,757 - +0.3 163,757 - -2.2 163,757 - -3.0 163,757 - -2.1 163,757 - -3.8 163,757 - -1.1 163,758 + -4.8 163,758 + +0.1 163,758 + -2.0 163,758 + +1.3 163,758 + +0.4 163,758 + -1.3 163,758 + -1.5 163,758 + -1.8 163,759 - -1.6 163,759 - -2.9 163,759 - -1.6 163,829 - -2.3 163,907 + -3.8 163,907 + -3.6 163,907 + -1.3 163,907 + -2.9 163,907 + -2.8 163,907 + -4.4 163,908 - -1.3 163,908 - +0.1 164,145 + panC MCAODC_00920 0.38 -2.7 164,145 + panC MCAODC_00920 0.38 -4.8 164,145 + panC MCAODC_00920 0.38 -1.2 164,145 + panC MCAODC_00920 0.38 -1.4 164,145 + panC MCAODC_00920 0.38 -2.9 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -1.5 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -2.0 164,146 - panC MCAODC_00920 0.38 -3.0 164,146 - panC MCAODC_00920 0.38 -2.0 164,146 - panC MCAODC_00920 0.38 -0.8 164,146 - panC MCAODC_00920 0.38 -1.9 164,146 - panC MCAODC_00920 0.38 -1.7 164,146 - panC MCAODC_00920 0.38 -0.7 164,146 - panC MCAODC_00920 0.38 -1.1 164,146 - panC MCAODC_00920 0.38 -3.8 164,146 - panC MCAODC_00920 0.38 -1.5 164,146 - panC MCAODC_00920 0.38 -1.8 164,146 - panC MCAODC_00920 0.38 -2.9 164,146 - panC MCAODC_00920 0.38 -4.3 164,238 - panC MCAODC_00920 0.49 -0.0 164,355 - panC MCAODC_00920 0.62 -0.5 164,398 - panC MCAODC_00920 0.67 -0.9 164,498 + panC MCAODC_00920 0.79 -1.3 164,498 + panC MCAODC_00920 0.79 -0.0 164,609 - -1.0 164,676 + +0.4 164,676 + +0.2 164,676 + +1.8 164,676 + -0.1 164,677 - +0.7 164,677 - -0.8 164,680 + -0.3 164,680 + +1.3 164,680 + -0.5 164,680 + -1.4 164,681 - +0.0 164,681 - +0.2 164,681 - +0.3 164,681 - +1.6 164,683 - +0.6 164,683 - +0.4 164,687 + +0.2 164,687 + +2.4 164,692 - +0.4
Or see this region's nucleotide sequence