Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tilS and yaeR are separated by 64 nucleotides yaeR and ldcC are separated by 56 nucleotides ldcC and accA are separated by 98 nucleotides
MCAODC_00630: tilS - tRNA lysidine(34) synthetase TilS, at 100,241 to 101,536
tilS
MCAODC_00635: yaeR - VOC family protein, at 101,601 to 101,990
yaeR
MCAODC_00640: ldcC - lysine decarboxylase LdcC, at 102,047 to 104,188
ldcC
MCAODC_00645: accA - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 104,287 to 105,246
accA
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 101.556 kb on - strand at 101.556 kb on - strand at 101.603 kb on - strand at 101.603 kb on - strand at 101.603 kb on - strand at 101.611 kb on + strand at 101.611 kb on + strand at 101.611 kb on + strand at 101.612 kb on - strand at 101.669 kb on - strand, within yaeR at 101.702 kb on + strand, within yaeR at 101.703 kb on - strand, within yaeR at 101.747 kb on + strand, within yaeR at 101.830 kb on + strand, within yaeR at 101.830 kb on + strand, within yaeR at 101.830 kb on + strand, within yaeR at 101.830 kb on + strand, within yaeR at 101.831 kb on - strand, within yaeR at 101.920 kb on + strand, within yaeR at 101.941 kb on + strand, within yaeR at 101.955 kb on - strand at 101.955 kb on - strand at 101.964 kb on - strand at 101.964 kb on - strand at 101.990 kb on + strand at 101.990 kb on + strand at 101.990 kb on + strand at 102.002 kb on + strand at 102.021 kb on - strand at 102.071 kb on + strand at 102.174 kb on - strand at 102.247 kb on + strand at 102.247 kb on + strand at 102.248 kb on - strand at 102.262 kb on + strand, within ldcC at 102.356 kb on - strand, within ldcC at 102.356 kb on - strand, within ldcC at 102.394 kb on + strand, within ldcC at 102.407 kb on - strand, within ldcC at 102.407 kb on - strand, within ldcC at 102.434 kb on - strand, within ldcC at 102.542 kb on + strand, within ldcC at 102.543 kb on - strand, within ldcC at 102.562 kb on + strand, within ldcC at 102.562 kb on + strand, within ldcC at 102.574 kb on + strand, within ldcC at 102.574 kb on + strand, within ldcC at 102.578 kb on - strand, within ldcC at 102.597 kb on + strand, within ldcC at 102.680 kb on - strand, within ldcC at 102.712 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.739 kb on + strand, within ldcC at 102.740 kb on - strand, within ldcC at 102.740 kb on - strand, within ldcC at 102.740 kb on - strand, within ldcC at 102.903 kb on - strand, within ldcC at 102.934 kb on + strand, within ldcC at 103.000 kb on + strand, within ldcC at 103.000 kb on + strand, within ldcC at 103.001 kb on - strand, within ldcC at 103.001 kb on - strand, within ldcC at 103.001 kb on - strand, within ldcC at 103.001 kb on - strand, within ldcC at 103.010 kb on - strand, within ldcC at 103.038 kb on + strand, within ldcC at 103.039 kb on - strand, within ldcC at 103.039 kb on - strand, within ldcC at 103.145 kb on - strand, within ldcC at 103.162 kb on - strand, within ldcC at 103.182 kb on + strand, within ldcC at 103.251 kb on + strand, within ldcC at 103.251 kb on + strand, within ldcC at 103.251 kb on + strand, within ldcC at 103.251 kb on + strand, within ldcC at 103.251 kb on + strand, within ldcC at 103.252 kb on - strand, within ldcC at 103.252 kb on - strand, within ldcC at 103.252 kb on - strand, within ldcC at 103.252 kb on - strand, within ldcC at 103.252 kb on - strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.266 kb on + strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.267 kb on - strand, within ldcC at 103.280 kb on - strand, within ldcC at 103.419 kb on - strand, within ldcC at 103.453 kb on + strand, within ldcC at 103.481 kb on - strand, within ldcC at 103.481 kb on - strand, within ldcC at 103.500 kb on + strand, within ldcC at 103.500 kb on + strand, within ldcC at 103.501 kb on - strand, within ldcC at 103.501 kb on - strand, within ldcC at 103.501 kb on - strand, within ldcC at 103.501 kb on - strand, within ldcC at 103.504 kb on + strand, within ldcC at 103.504 kb on + strand, within ldcC at 103.546 kb on + strand, within ldcC at 103.546 kb on + strand, within ldcC at 103.546 kb on + strand, within ldcC at 103.548 kb on + strand, within ldcC at 103.549 kb on - strand, within ldcC at 103.549 kb on - strand, within ldcC at 103.549 kb on - strand, within ldcC at 103.549 kb on - strand, within ldcC at 103.666 kb on + strand, within ldcC at 103.666 kb on + strand, within ldcC at 103.733 kb on - strand, within ldcC at 103.745 kb on - strand, within ldcC at 103.755 kb on + strand, within ldcC at 103.756 kb on - strand, within ldcC at 103.756 kb on - strand, within ldcC at 103.774 kb on - strand, within ldcC at 103.777 kb on + strand, within ldcC at 103.777 kb on + strand, within ldcC at 103.778 kb on - strand, within ldcC at 103.811 kb on - strand, within ldcC at 103.811 kb on - strand, within ldcC at 103.841 kb on - strand, within ldcC at 103.962 kb on + strand, within ldcC at 103.963 kb on - strand, within ldcC at 103.970 kb on - strand, within ldcC at 103.987 kb on + strand at 103.991 kb on + strand at 103.991 kb on + strand at 104.005 kb on - strand at 104.045 kb on - strand at 104.147 kb on - strand at 104.148 kb on + strand at 104.148 kb on + strand at 104.214 kb on + strand at 104.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 101,556 - -1.3 101,556 - +0.2 101,603 - -2.1 101,603 - +0.5 101,603 - -0.1 101,611 + -0.3 101,611 + +0.9 101,611 + +0.2 101,612 - +0.5 101,669 - yaeR MCAODC_00635 0.17 -0.7 101,702 + yaeR MCAODC_00635 0.26 -2.1 101,703 - yaeR MCAODC_00635 0.26 -2.5 101,747 + yaeR MCAODC_00635 0.37 +0.0 101,830 + yaeR MCAODC_00635 0.59 -1.3 101,830 + yaeR MCAODC_00635 0.59 +0.2 101,830 + yaeR MCAODC_00635 0.59 -1.6 101,830 + yaeR MCAODC_00635 0.59 -3.3 101,831 - yaeR MCAODC_00635 0.59 +0.1 101,920 + yaeR MCAODC_00635 0.82 -2.7 101,941 + yaeR MCAODC_00635 0.87 +0.0 101,955 - -0.6 101,955 - +0.3 101,964 - +1.3 101,964 - +0.8 101,990 + -0.5 101,990 + -0.0 101,990 + -0.8 102,002 + -0.4 102,021 - -2.5 102,071 + -1.1 102,174 - +0.6 102,247 + -1.3 102,247 + +2.5 102,248 - +1.4 102,262 + ldcC MCAODC_00640 0.10 +1.0 102,356 - ldcC MCAODC_00640 0.14 -1.3 102,356 - ldcC MCAODC_00640 0.14 +1.1 102,394 + ldcC MCAODC_00640 0.16 -0.8 102,407 - ldcC MCAODC_00640 0.17 -0.2 102,407 - ldcC MCAODC_00640 0.17 -1.7 102,434 - ldcC MCAODC_00640 0.18 -0.5 102,542 + ldcC MCAODC_00640 0.23 +1.2 102,543 - ldcC MCAODC_00640 0.23 -0.2 102,562 + ldcC MCAODC_00640 0.24 -1.7 102,562 + ldcC MCAODC_00640 0.24 +0.2 102,574 + ldcC MCAODC_00640 0.25 -0.2 102,574 + ldcC MCAODC_00640 0.25 -0.1 102,578 - ldcC MCAODC_00640 0.25 +2.3 102,597 + ldcC MCAODC_00640 0.26 +1.0 102,680 - ldcC MCAODC_00640 0.30 -0.7 102,712 + ldcC MCAODC_00640 0.31 -0.2 102,739 + ldcC MCAODC_00640 0.32 -0.9 102,739 + ldcC MCAODC_00640 0.32 +1.0 102,739 + ldcC MCAODC_00640 0.32 +1.1 102,739 + ldcC MCAODC_00640 0.32 -1.0 102,739 + ldcC MCAODC_00640 0.32 -1.4 102,739 + ldcC MCAODC_00640 0.32 -1.7 102,739 + ldcC MCAODC_00640 0.32 -2.3 102,740 - ldcC MCAODC_00640 0.32 -0.9 102,740 - ldcC MCAODC_00640 0.32 +1.5 102,740 - ldcC MCAODC_00640 0.32 +0.4 102,903 - ldcC MCAODC_00640 0.40 +0.7 102,934 + ldcC MCAODC_00640 0.41 -0.0 103,000 + ldcC MCAODC_00640 0.44 -1.2 103,000 + ldcC MCAODC_00640 0.44 -0.1 103,001 - ldcC MCAODC_00640 0.45 -1.7 103,001 - ldcC MCAODC_00640 0.45 -0.9 103,001 - ldcC MCAODC_00640 0.45 +1.0 103,001 - ldcC MCAODC_00640 0.45 -0.9 103,010 - ldcC MCAODC_00640 0.45 +1.7 103,038 + ldcC MCAODC_00640 0.46 -1.1 103,039 - ldcC MCAODC_00640 0.46 -2.0 103,039 - ldcC MCAODC_00640 0.46 +0.3 103,145 - ldcC MCAODC_00640 0.51 +1.0 103,162 - ldcC MCAODC_00640 0.52 -0.9 103,182 + ldcC MCAODC_00640 0.53 -0.9 103,251 + ldcC MCAODC_00640 0.56 +1.1 103,251 + ldcC MCAODC_00640 0.56 -0.2 103,251 + ldcC MCAODC_00640 0.56 -1.4 103,251 + ldcC MCAODC_00640 0.56 +0.0 103,251 + ldcC MCAODC_00640 0.56 +0.5 103,252 - ldcC MCAODC_00640 0.56 +0.6 103,252 - ldcC MCAODC_00640 0.56 -0.5 103,252 - ldcC MCAODC_00640 0.56 +2.0 103,252 - ldcC MCAODC_00640 0.56 -1.6 103,252 - ldcC MCAODC_00640 0.56 -2.2 103,266 + ldcC MCAODC_00640 0.57 +1.2 103,266 + ldcC MCAODC_00640 0.57 -0.1 103,266 + ldcC MCAODC_00640 0.57 +0.4 103,266 + ldcC MCAODC_00640 0.57 -2.9 103,266 + ldcC MCAODC_00640 0.57 +0.2 103,266 + ldcC MCAODC_00640 0.57 +0.7 103,266 + ldcC MCAODC_00640 0.57 +0.9 103,267 - ldcC MCAODC_00640 0.57 +0.1 103,267 - ldcC MCAODC_00640 0.57 +0.1 103,267 - ldcC MCAODC_00640 0.57 -1.0 103,267 - ldcC MCAODC_00640 0.57 +0.1 103,267 - ldcC MCAODC_00640 0.57 -0.9 103,267 - ldcC MCAODC_00640 0.57 +0.6 103,267 - ldcC MCAODC_00640 0.57 +1.0 103,267 - ldcC MCAODC_00640 0.57 -4.6 103,280 - ldcC MCAODC_00640 0.58 +0.3 103,419 - ldcC MCAODC_00640 0.64 -0.4 103,453 + ldcC MCAODC_00640 0.66 +2.0 103,481 - ldcC MCAODC_00640 0.67 +1.2 103,481 - ldcC MCAODC_00640 0.67 +1.3 103,500 + ldcC MCAODC_00640 0.68 -0.9 103,500 + ldcC MCAODC_00640 0.68 -2.0 103,501 - ldcC MCAODC_00640 0.68 -0.3 103,501 - ldcC MCAODC_00640 0.68 -0.3 103,501 - ldcC MCAODC_00640 0.68 +0.1 103,501 - ldcC MCAODC_00640 0.68 -2.9 103,504 + ldcC MCAODC_00640 0.68 -0.2 103,504 + ldcC MCAODC_00640 0.68 +0.8 103,546 + ldcC MCAODC_00640 0.70 +1.8 103,546 + ldcC MCAODC_00640 0.70 -3.4 103,546 + ldcC MCAODC_00640 0.70 +0.6 103,548 + ldcC MCAODC_00640 0.70 +0.1 103,549 - ldcC MCAODC_00640 0.70 -0.1 103,549 - ldcC MCAODC_00640 0.70 +1.0 103,549 - ldcC MCAODC_00640 0.70 -1.4 103,549 - ldcC MCAODC_00640 0.70 +0.5 103,666 + ldcC MCAODC_00640 0.76 +0.5 103,666 + ldcC MCAODC_00640 0.76 +0.1 103,733 - ldcC MCAODC_00640 0.79 -0.0 103,745 - ldcC MCAODC_00640 0.79 -2.4 103,755 + ldcC MCAODC_00640 0.80 +0.4 103,756 - ldcC MCAODC_00640 0.80 -0.3 103,756 - ldcC MCAODC_00640 0.80 -1.8 103,774 - ldcC MCAODC_00640 0.81 +1.4 103,777 + ldcC MCAODC_00640 0.81 -1.0 103,777 + ldcC MCAODC_00640 0.81 -1.1 103,778 - ldcC MCAODC_00640 0.81 -2.4 103,811 - ldcC MCAODC_00640 0.82 -0.4 103,811 - ldcC MCAODC_00640 0.82 -0.9 103,841 - ldcC MCAODC_00640 0.84 +0.6 103,962 + ldcC MCAODC_00640 0.89 +0.1 103,963 - ldcC MCAODC_00640 0.89 -0.6 103,970 - ldcC MCAODC_00640 0.90 -0.1 103,987 + -0.3 103,991 + -1.1 103,991 + +1.4 104,005 - -2.1 104,045 - -0.7 104,147 - -0.6 104,148 + -1.1 104,148 + -2.3 104,214 + -0.5 104,214 + +0.7
Or see this region's nucleotide sequence