Strain Fitness in Erwinia amylovora T8 around OLJFJH_04900

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04890 and OLJFJH_04895 are separated by 308 nucleotidesOLJFJH_04895 and OLJFJH_04900 are separated by 98 nucleotidesOLJFJH_04900 and OLJFJH_04905 are separated by 65 nucleotides OLJFJH_04890: OLJFJH_04890 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 968,511 to 970,178 _04890 OLJFJH_04895: OLJFJH_04895 - organic hydroperoxide resistance protein, at 970,487 to 970,915 _04895 OLJFJH_04900: OLJFJH_04900 - MarR family transcriptional regulator, at 971,014 to 971,481 _04900 OLJFJH_04905: OLJFJH_04905 - GTP pyrophosphokinase, at 971,547 to 972,167 _04905 Position (kb) 971 972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 970.090 kb on + strandat 970.123 kb on + strandat 970.124 kb on - strandat 970.124 kb on - strandat 970.186 kb on + strandat 970.186 kb on + strandat 970.248 kb on + strandat 970.249 kb on - strandat 970.294 kb on + strandat 970.347 kb on + strandat 970.351 kb on + strandat 970.357 kb on + strandat 970.357 kb on + strandat 970.358 kb on - strandat 970.358 kb on - strandat 970.358 kb on - strandat 970.358 kb on - strandat 970.413 kb on - strandat 970.437 kb on - strandat 970.472 kb on + strandat 970.472 kb on + strandat 970.472 kb on + strandat 970.472 kb on + strandat 970.488 kb on + strandat 970.488 kb on + strandat 970.488 kb on + strandat 970.489 kb on - strandat 970.489 kb on - strandat 970.535 kb on - strand, within OLJFJH_04895at 970.535 kb on - strand, within OLJFJH_04895at 970.552 kb on + strand, within OLJFJH_04895at 970.812 kb on - strand, within OLJFJH_04895at 970.891 kb on + strandat 970.915 kb on + strandat 970.915 kb on + strandat 970.915 kb on + strandat 970.916 kb on - strandat 970.980 kb on + strandat 970.980 kb on + strandat 970.985 kb on - strandat 970.985 kb on - strandat 970.988 kb on + strandat 970.988 kb on + strandat 970.994 kb on - strandat 971.022 kb on + strandat 971.022 kb on + strandat 971.036 kb on - strandat 971.036 kb on - strandat 971.258 kb on + strand, within OLJFJH_04900at 971.293 kb on - strand, within OLJFJH_04900at 971.293 kb on - strand, within OLJFJH_04900at 971.324 kb on + strand, within OLJFJH_04900at 971.333 kb on + strand, within OLJFJH_04900at 971.333 kb on + strand, within OLJFJH_04900at 971.334 kb on - strand, within OLJFJH_04900at 971.373 kb on + strand, within OLJFJH_04900at 971.484 kb on + strandat 971.485 kb on - strandat 971.496 kb on + strandat 971.504 kb on + strandat 971.552 kb on + strandat 971.552 kb on + strandat 971.552 kb on + strandat 971.552 kb on + strandat 971.553 kb on - strandat 971.553 kb on - strandat 971.553 kb on - strandat 971.553 kb on - strandat 971.553 kb on - strandat 971.553 kb on - strandat 971.619 kb on + strand, within OLJFJH_04905at 971.621 kb on + strand, within OLJFJH_04905at 971.621 kb on + strand, within OLJFJH_04905at 971.634 kb on + strand, within OLJFJH_04905at 971.635 kb on - strand, within OLJFJH_04905at 971.635 kb on - strand, within OLJFJH_04905at 971.635 kb on - strand, within OLJFJH_04905at 971.636 kb on + strand, within OLJFJH_04905at 971.636 kb on + strand, within OLJFJH_04905at 971.637 kb on - strand, within OLJFJH_04905at 971.668 kb on + strand, within OLJFJH_04905at 971.864 kb on + strand, within OLJFJH_04905at 971.865 kb on - strand, within OLJFJH_04905at 971.934 kb on - strand, within OLJFJH_04905at 971.941 kb on - strand, within OLJFJH_04905at 971.941 kb on - strand, within OLJFJH_04905at 971.989 kb on + strand, within OLJFJH_04905at 971.989 kb on + strand, within OLJFJH_04905at 972.053 kb on + strand, within OLJFJH_04905at 972.055 kb on + strand, within OLJFJH_04905at 972.055 kb on + strand, within OLJFJH_04905at 972.056 kb on - strand, within OLJFJH_04905at 972.159 kb on + strandat 972.160 kb on - strandat 972.359 kb on + strandat 972.364 kb on + strandat 972.399 kb on + strandat 972.454 kb on + strandat 972.454 kb on + strandat 972.461 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-9
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970,090 + -0.7
970,123 + -0.3
970,124 - +2.5
970,124 - -3.0
970,186 + +0.3
970,186 + +0.2
970,248 + -0.2
970,249 - +0.1
970,294 + +0.2
970,347 + -1.0
970,351 + +0.0
970,357 + -0.6
970,357 + -1.1
970,358 - -0.3
970,358 - +1.0
970,358 - +2.5
970,358 - -0.9
970,413 - +0.2
970,437 - -0.1
970,472 + +0.1
970,472 + +0.6
970,472 + -1.0
970,472 + +0.7
970,488 + +0.2
970,488 + -3.0
970,488 + -1.4
970,489 - -0.2
970,489 - +1.9
970,535 - OLJFJH_04895 0.11 -0.2
970,535 - OLJFJH_04895 0.11 -0.3
970,552 + OLJFJH_04895 0.15 -0.4
970,812 - OLJFJH_04895 0.76 +0.7
970,891 + -0.4
970,915 + -0.6
970,915 + -0.3
970,915 + -1.1
970,916 - +0.9
970,980 + +0.1
970,980 + -1.0
970,985 - +0.1
970,985 - +1.9
970,988 + +0.6
970,988 + -2.1
970,994 - -1.6
971,022 + +1.8
971,022 + +0.6
971,036 - -0.9
971,036 - -0.6
971,258 + OLJFJH_04900 0.52 -0.9
971,293 - OLJFJH_04900 0.60 -1.2
971,293 - OLJFJH_04900 0.60 -1.3
971,324 + OLJFJH_04900 0.66 +0.0
971,333 + OLJFJH_04900 0.68 -1.1
971,333 + OLJFJH_04900 0.68 -0.0
971,334 - OLJFJH_04900 0.68 -1.1
971,373 + OLJFJH_04900 0.77 -0.2
971,484 + +0.9
971,485 - -0.4
971,496 + +0.7
971,504 + -0.4
971,552 + -1.5
971,552 + +0.1
971,552 + -0.2
971,552 + +0.5
971,553 - +0.4
971,553 - +0.2
971,553 - -2.3
971,553 - -0.8
971,553 - +1.6
971,553 - -0.1
971,619 + OLJFJH_04905 0.12 -0.4
971,621 + OLJFJH_04905 0.12 -1.4
971,621 + OLJFJH_04905 0.12 -1.2
971,634 + OLJFJH_04905 0.14 -0.4
971,635 - OLJFJH_04905 0.14 +0.2
971,635 - OLJFJH_04905 0.14 -0.6
971,635 - OLJFJH_04905 0.14 -0.6
971,636 + OLJFJH_04905 0.14 -0.5
971,636 + OLJFJH_04905 0.14 -1.0
971,637 - OLJFJH_04905 0.14 -1.7
971,668 + OLJFJH_04905 0.19 +0.9
971,864 + OLJFJH_04905 0.51 +2.7
971,865 - OLJFJH_04905 0.51 -0.4
971,934 - OLJFJH_04905 0.62 +0.3
971,941 - OLJFJH_04905 0.63 +2.6
971,941 - OLJFJH_04905 0.63 +0.3
971,989 + OLJFJH_04905 0.71 +0.2
971,989 + OLJFJH_04905 0.71 -1.4
972,053 + OLJFJH_04905 0.81 +0.3
972,055 + OLJFJH_04905 0.82 -1.0
972,055 + OLJFJH_04905 0.82 -1.5
972,056 - OLJFJH_04905 0.82 -0.8
972,159 + -0.9
972,160 - -0.0
972,359 + -0.1
972,364 + +0.6
972,399 + +0.7
972,454 + -0.7
972,454 + -0.1
972,461 + +2.4

Or see this region's nucleotide sequence