Strain Fitness in Erwinia amylovora T8 around OLJFJH_02935

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02930 and OLJFJH_02935 overlap by 4 nucleotidesOLJFJH_02935 and OLJFJH_02940 are separated by 418 nucleotidesOLJFJH_02940 and OLJFJH_02945 are separated by 401 nucleotides OLJFJH_02930: OLJFJH_02930 - SPI-7-type island replicative DNA helicase, at 526,972 to 528,336 _02930 OLJFJH_02935: OLJFJH_02935 - ParA family protein, at 528,333 to 529,205 _02935 OLJFJH_02940: OLJFJH_02940 - Integrase (Partial), at 529,624 to 529,770 _02940 OLJFJH_02945: OLJFJH_02945 - putative arabinose efflux permease AraJ MFS family, at 530,172 to 531,428 _02945 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 527.415 kb on - strand, within OLJFJH_02930at 527.461 kb on - strand, within OLJFJH_02930at 527.515 kb on - strand, within OLJFJH_02930at 527.590 kb on - strand, within OLJFJH_02930at 527.782 kb on - strand, within OLJFJH_02930at 527.974 kb on - strand, within OLJFJH_02930at 527.974 kb on - strand, within OLJFJH_02930at 528.032 kb on + strand, within OLJFJH_02930at 528.033 kb on - strand, within OLJFJH_02930at 528.040 kb on + strand, within OLJFJH_02930at 528.041 kb on - strand, within OLJFJH_02930at 528.084 kb on - strand, within OLJFJH_02930at 528.213 kb on + strandat 528.238 kb on + strandat 528.239 kb on - strandat 528.304 kb on + strandat 528.304 kb on + strandat 528.318 kb on + strandat 528.319 kb on - strandat 528.319 kb on - strandat 528.319 kb on - strandat 528.326 kb on - strandat 528.451 kb on + strand, within OLJFJH_02935at 528.480 kb on + strand, within OLJFJH_02935at 528.537 kb on + strand, within OLJFJH_02935at 528.587 kb on + strand, within OLJFJH_02935at 528.650 kb on - strand, within OLJFJH_02935at 528.651 kb on - strand, within OLJFJH_02935at 528.651 kb on - strand, within OLJFJH_02935at 528.668 kb on + strand, within OLJFJH_02935at 528.669 kb on - strand, within OLJFJH_02935at 528.685 kb on + strand, within OLJFJH_02935at 528.708 kb on - strand, within OLJFJH_02935at 528.759 kb on + strand, within OLJFJH_02935at 528.816 kb on - strand, within OLJFJH_02935at 528.847 kb on + strand, within OLJFJH_02935at 528.848 kb on - strand, within OLJFJH_02935at 528.909 kb on + strand, within OLJFJH_02935at 528.910 kb on - strand, within OLJFJH_02935at 528.949 kb on + strand, within OLJFJH_02935at 528.954 kb on + strand, within OLJFJH_02935at 528.955 kb on - strand, within OLJFJH_02935at 528.955 kb on - strand, within OLJFJH_02935at 528.955 kb on - strand, within OLJFJH_02935at 528.955 kb on - strand, within OLJFJH_02935at 528.971 kb on + strand, within OLJFJH_02935at 528.972 kb on - strand, within OLJFJH_02935at 529.059 kb on - strand, within OLJFJH_02935at 529.059 kb on - strand, within OLJFJH_02935at 529.060 kb on + strand, within OLJFJH_02935at 529.060 kb on + strand, within OLJFJH_02935at 529.060 kb on + strand, within OLJFJH_02935at 529.061 kb on - strand, within OLJFJH_02935at 529.061 kb on - strand, within OLJFJH_02935at 529.061 kb on - strand, within OLJFJH_02935at 529.064 kb on + strand, within OLJFJH_02935at 529.064 kb on + strand, within OLJFJH_02935at 529.064 kb on + strand, within OLJFJH_02935at 529.065 kb on - strand, within OLJFJH_02935at 529.065 kb on - strand, within OLJFJH_02935at 529.065 kb on - strand, within OLJFJH_02935at 529.065 kb on - strand, within OLJFJH_02935at 529.065 kb on - strand, within OLJFJH_02935at 529.065 kb on - strand, within OLJFJH_02935at 529.076 kb on + strand, within OLJFJH_02935at 529.077 kb on - strand, within OLJFJH_02935at 529.113 kb on - strand, within OLJFJH_02935at 529.163 kb on + strandat 529.164 kb on - strandat 529.197 kb on + strandat 529.225 kb on + strandat 529.237 kb on + strandat 529.257 kb on + strandat 529.257 kb on + strandat 529.258 kb on - strandat 529.258 kb on - strandat 529.282 kb on + strandat 529.626 kb on - strandat 529.695 kb on - strand, within OLJFJH_02940at 529.778 kb on + strandat 529.779 kb on - strandat 529.779 kb on - strandat 529.945 kb on - strandat 529.945 kb on - strandat 529.982 kb on + strandat 529.982 kb on + strandat 529.983 kb on - strandat 529.985 kb on + strandat 529.985 kb on + strandat 529.986 kb on - strandat 530.014 kb on - strandat 530.015 kb on + strandat 530.016 kb on - strandat 530.016 kb on - strandat 530.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-9
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527,415 - OLJFJH_02930 0.32 -2.0
527,461 - OLJFJH_02930 0.36 -0.5
527,515 - OLJFJH_02930 0.40 -0.6
527,590 - OLJFJH_02930 0.45 -2.5
527,782 - OLJFJH_02930 0.59 -0.1
527,974 - OLJFJH_02930 0.73 -0.3
527,974 - OLJFJH_02930 0.73 -0.1
528,032 + OLJFJH_02930 0.78 +0.3
528,033 - OLJFJH_02930 0.78 +1.0
528,040 + OLJFJH_02930 0.78 -0.4
528,041 - OLJFJH_02930 0.78 -1.1
528,084 - OLJFJH_02930 0.81 -0.6
528,213 + +0.1
528,238 + -0.5
528,239 - +0.3
528,304 + +1.5
528,304 + +2.2
528,318 + +0.4
528,319 - -1.6
528,319 - +0.2
528,319 - -0.4
528,326 - +1.0
528,451 + OLJFJH_02935 0.14 -1.2
528,480 + OLJFJH_02935 0.17 -0.3
528,537 + OLJFJH_02935 0.23 +2.1
528,587 + OLJFJH_02935 0.29 +1.7
528,650 - OLJFJH_02935 0.36 -1.2
528,651 - OLJFJH_02935 0.36 -0.2
528,651 - OLJFJH_02935 0.36 -0.2
528,668 + OLJFJH_02935 0.38 -0.2
528,669 - OLJFJH_02935 0.38 +3.2
528,685 + OLJFJH_02935 0.40 -0.5
528,708 - OLJFJH_02935 0.43 +0.3
528,759 + OLJFJH_02935 0.49 +0.1
528,816 - OLJFJH_02935 0.55 -0.3
528,847 + OLJFJH_02935 0.59 -1.2
528,848 - OLJFJH_02935 0.59 +0.3
528,909 + OLJFJH_02935 0.66 -0.3
528,910 - OLJFJH_02935 0.66 +0.3
528,949 + OLJFJH_02935 0.71 -0.4
528,954 + OLJFJH_02935 0.71 +1.5
528,955 - OLJFJH_02935 0.71 +0.8
528,955 - OLJFJH_02935 0.71 +0.3
528,955 - OLJFJH_02935 0.71 +0.6
528,955 - OLJFJH_02935 0.71 -0.6
528,971 + OLJFJH_02935 0.73 -1.0
528,972 - OLJFJH_02935 0.73 +0.2
529,059 - OLJFJH_02935 0.83 +1.1
529,059 - OLJFJH_02935 0.83 +2.8
529,060 + OLJFJH_02935 0.83 -1.2
529,060 + OLJFJH_02935 0.83 +1.2
529,060 + OLJFJH_02935 0.83 +0.6
529,061 - OLJFJH_02935 0.83 -0.2
529,061 - OLJFJH_02935 0.83 +0.3
529,061 - OLJFJH_02935 0.83 +0.8
529,064 + OLJFJH_02935 0.84 +0.1
529,064 + OLJFJH_02935 0.84 +1.1
529,064 + OLJFJH_02935 0.84 +1.5
529,065 - OLJFJH_02935 0.84 -1.0
529,065 - OLJFJH_02935 0.84 -0.2
529,065 - OLJFJH_02935 0.84 +0.3
529,065 - OLJFJH_02935 0.84 -0.2
529,065 - OLJFJH_02935 0.84 -0.2
529,065 - OLJFJH_02935 0.84 +0.9
529,076 + OLJFJH_02935 0.85 -0.6
529,077 - OLJFJH_02935 0.85 +1.6
529,113 - OLJFJH_02935 0.89 +1.7
529,163 + +1.4
529,164 - +0.2
529,197 + +0.1
529,225 + +0.2
529,237 + -0.2
529,257 + -0.9
529,257 + +0.9
529,258 - +0.3
529,258 - +0.0
529,282 + +0.0
529,626 - -0.1
529,695 - OLJFJH_02940 0.48 -0.6
529,778 + -0.7
529,779 - +1.6
529,779 - +0.5
529,945 - -0.5
529,945 - -1.6
529,982 + +0.3
529,982 + +0.4
529,983 - +0.4
529,985 + -0.1
529,985 + +0.2
529,986 - +0.5
530,014 - -2.9
530,015 + -1.0
530,016 - +0.6
530,016 - +0.4
530,124 + -1.5

Or see this region's nucleotide sequence