Strain Fitness in Erwinia amylovora T8 around OLJFJH_04945

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04940 and OLJFJH_04945 overlap by 4 nucleotidesOLJFJH_04945 and OLJFJH_04950 overlap by 16 nucleotides OLJFJH_04940: OLJFJH_04940 - mannitol dehydrogenase family protein, at 978,961 to 980,364 _04940 OLJFJH_04945: OLJFJH_04945 - hypothetical protein, at 980,361 to 980,813 _04945 OLJFJH_04950: OLJFJH_04950 - acetyltransferase, at 980,798 to 981,793 _04950 Position (kb) 980 981Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 979.432 kb on - strand, within OLJFJH_04940at 979.464 kb on + strand, within OLJFJH_04940at 979.464 kb on + strand, within OLJFJH_04940at 979.716 kb on + strand, within OLJFJH_04940at 979.716 kb on + strand, within OLJFJH_04940at 979.855 kb on + strand, within OLJFJH_04940at 979.856 kb on - strand, within OLJFJH_04940at 979.856 kb on - strand, within OLJFJH_04940at 979.856 kb on - strand, within OLJFJH_04940at 979.903 kb on + strand, within OLJFJH_04940at 979.903 kb on + strand, within OLJFJH_04940at 979.903 kb on + strand, within OLJFJH_04940at 979.904 kb on - strand, within OLJFJH_04940at 979.910 kb on + strand, within OLJFJH_04940at 979.977 kb on - strand, within OLJFJH_04940at 980.007 kb on + strand, within OLJFJH_04940at 980.082 kb on + strand, within OLJFJH_04940at 980.082 kb on + strand, within OLJFJH_04940at 980.082 kb on + strand, within OLJFJH_04940at 980.083 kb on - strand, within OLJFJH_04940at 980.083 kb on - strand, within OLJFJH_04940at 980.140 kb on - strand, within OLJFJH_04940at 980.140 kb on - strand, within OLJFJH_04940at 980.140 kb on - strand, within OLJFJH_04940at 980.176 kb on + strand, within OLJFJH_04940at 980.372 kb on - strandat 980.499 kb on - strand, within OLJFJH_04945at 980.654 kb on + strand, within OLJFJH_04945at 980.654 kb on + strand, within OLJFJH_04945at 980.654 kb on + strand, within OLJFJH_04945at 980.814 kb on + strandat 980.815 kb on - strandat 980.815 kb on - strandat 980.815 kb on - strandat 980.815 kb on - strandat 980.847 kb on - strandat 980.912 kb on - strand, within OLJFJH_04950at 980.933 kb on - strand, within OLJFJH_04950at 981.005 kb on - strand, within OLJFJH_04950at 981.063 kb on - strand, within OLJFJH_04950at 981.078 kb on + strand, within OLJFJH_04950at 981.246 kb on + strand, within OLJFJH_04950at 981.247 kb on - strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.250 kb on - strand, within OLJFJH_04950at 981.250 kb on - strand, within OLJFJH_04950at 981.250 kb on - strand, within OLJFJH_04950at 981.270 kb on + strand, within OLJFJH_04950at 981.271 kb on - strand, within OLJFJH_04950at 981.271 kb on - strand, within OLJFJH_04950at 981.392 kb on + strand, within OLJFJH_04950at 981.392 kb on + strand, within OLJFJH_04950at 981.393 kb on - strand, within OLJFJH_04950at 981.396 kb on - strand, within OLJFJH_04950at 981.411 kb on + strand, within OLJFJH_04950at 981.411 kb on + strand, within OLJFJH_04950at 981.412 kb on - strand, within OLJFJH_04950at 981.412 kb on - strand, within OLJFJH_04950at 981.416 kb on - strand, within OLJFJH_04950at 981.471 kb on + strand, within OLJFJH_04950at 981.516 kb on + strand, within OLJFJH_04950at 981.517 kb on - strand, within OLJFJH_04950at 981.537 kb on + strand, within OLJFJH_04950at 981.538 kb on - strand, within OLJFJH_04950at 981.695 kb on + strandat 981.712 kb on - strandat 981.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5
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979,432 - OLJFJH_04940 0.34 -0.2
979,464 + OLJFJH_04940 0.36 +3.0
979,464 + OLJFJH_04940 0.36 +1.1
979,716 + OLJFJH_04940 0.54 -0.6
979,716 + OLJFJH_04940 0.54 +0.1
979,855 + OLJFJH_04940 0.64 -0.2
979,856 - OLJFJH_04940 0.64 -0.8
979,856 - OLJFJH_04940 0.64 +2.1
979,856 - OLJFJH_04940 0.64 +0.9
979,903 + OLJFJH_04940 0.67 -1.4
979,903 + OLJFJH_04940 0.67 -1.4
979,903 + OLJFJH_04940 0.67 +0.9
979,904 - OLJFJH_04940 0.67 +0.9
979,910 + OLJFJH_04940 0.68 +1.2
979,977 - OLJFJH_04940 0.72 -2.7
980,007 + OLJFJH_04940 0.75 -3.1
980,082 + OLJFJH_04940 0.80 -1.0
980,082 + OLJFJH_04940 0.80 -0.3
980,082 + OLJFJH_04940 0.80 +0.3
980,083 - OLJFJH_04940 0.80 +1.3
980,083 - OLJFJH_04940 0.80 -0.1
980,140 - OLJFJH_04940 0.84 +0.5
980,140 - OLJFJH_04940 0.84 -1.2
980,140 - OLJFJH_04940 0.84 -1.7
980,176 + OLJFJH_04940 0.87 -2.6
980,372 - +0.7
980,499 - OLJFJH_04945 0.30 -1.9
980,654 + OLJFJH_04945 0.65 -0.9
980,654 + OLJFJH_04945 0.65 -2.3
980,654 + OLJFJH_04945 0.65 -0.4
980,814 + +0.9
980,815 - -1.0
980,815 - +0.2
980,815 - +1.1
980,815 - +0.4
980,847 - +0.2
980,912 - OLJFJH_04950 0.11 -1.9
980,933 - OLJFJH_04950 0.14 -0.3
981,005 - OLJFJH_04950 0.21 -1.1
981,063 - OLJFJH_04950 0.27 -0.4
981,078 + OLJFJH_04950 0.28 -0.3
981,246 + OLJFJH_04950 0.45 +0.8
981,247 - OLJFJH_04950 0.45 +1.2
981,249 + OLJFJH_04950 0.45 +0.6
981,249 + OLJFJH_04950 0.45 +1.0
981,249 + OLJFJH_04950 0.45 -0.9
981,249 + OLJFJH_04950 0.45 -1.1
981,249 + OLJFJH_04950 0.45 +0.0
981,250 - OLJFJH_04950 0.45 +0.5
981,250 - OLJFJH_04950 0.45 +0.2
981,250 - OLJFJH_04950 0.45 +1.2
981,270 + OLJFJH_04950 0.47 +1.3
981,271 - OLJFJH_04950 0.47 +1.2
981,271 - OLJFJH_04950 0.47 -0.6
981,392 + OLJFJH_04950 0.60 -0.2
981,392 + OLJFJH_04950 0.60 -0.2
981,393 - OLJFJH_04950 0.60 +1.6
981,396 - OLJFJH_04950 0.60 +2.8
981,411 + OLJFJH_04950 0.62 +1.6
981,411 + OLJFJH_04950 0.62 -3.6
981,412 - OLJFJH_04950 0.62 -0.3
981,412 - OLJFJH_04950 0.62 +1.0
981,416 - OLJFJH_04950 0.62 +0.7
981,471 + OLJFJH_04950 0.68 -0.8
981,516 + OLJFJH_04950 0.72 +0.5
981,517 - OLJFJH_04950 0.72 +0.0
981,537 + OLJFJH_04950 0.74 +0.2
981,538 - OLJFJH_04950 0.74 +1.1
981,695 + +0.3
981,712 - +0.2
981,762 - +1.1

Or see this region's nucleotide sequence