Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03540 and OLJFJH_03545 are separated by 39 nucleotides OLJFJH_03545 and OLJFJH_03550 are separated by 183 nucleotides OLJFJH_03550 and OLJFJH_03555 are separated by 135 nucleotides
OLJFJH_03540: OLJFJH_03540 - antitermination protein Q, at 683,461 to 683,823
_03540
OLJFJH_03545: OLJFJH_03545 - HNH endonuclease, at 683,863 to 684,450
_03545
OLJFJH_03550: OLJFJH_03550 - pyocin activator protein PrtN, at 684,634 to 684,885
_03550
OLJFJH_03555: OLJFJH_03555 - hypothetical protein, at 685,021 to 685,176
_03555
Position (kb) 684
685 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 683.815 kb on - strand at 683.980 kb on - strand, within OLJFJH_03545 at 684.018 kb on + strand, within OLJFJH_03545 at 684.096 kb on + strand, within OLJFJH_03545 at 684.098 kb on + strand, within OLJFJH_03545 at 684.099 kb on - strand, within OLJFJH_03545 at 684.138 kb on + strand, within OLJFJH_03545 at 684.139 kb on - strand, within OLJFJH_03545 at 684.277 kb on + strand, within OLJFJH_03545 at 684.324 kb on + strand, within OLJFJH_03545 at 684.337 kb on - strand, within OLJFJH_03545 at 684.337 kb on - strand, within OLJFJH_03545 at 684.337 kb on - strand, within OLJFJH_03545 at 684.551 kb on + strand at 684.551 kb on + strand at 684.552 kb on - strand at 684.552 kb on - strand at 684.603 kb on - strand at 684.606 kb on + strand at 684.607 kb on - strand at 684.633 kb on + strand at 684.633 kb on + strand at 684.634 kb on - strand at 684.640 kb on - strand at 684.706 kb on + strand, within OLJFJH_03550 at 684.825 kb on - strand, within OLJFJH_03550 at 684.846 kb on + strand, within OLJFJH_03550 at 684.930 kb on - strand at 684.941 kb on - strand at 684.998 kb on + strand at 685.016 kb on + strand at 685.017 kb on - strand at 685.017 kb on - strand at 685.022 kb on + strand at 685.022 kb on + strand at 685.023 kb on - strand at 685.023 kb on - strand at 685.087 kb on - strand, within OLJFJH_03555 at 685.147 kb on - strand, within OLJFJH_03555 at 685.155 kb on + strand, within OLJFJH_03555 at 685.155 kb on + strand, within OLJFJH_03555 at 685.156 kb on - strand, within OLJFJH_03555 at 685.200 kb on - strand at 685.235 kb on - strand at 685.267 kb on - strand at 685.272 kb on + strand at 685.275 kb on + strand at 685.276 kb on - strand at 685.276 kb on - strand at 685.276 kb on - strand at 685.279 kb on + strand at 685.373 kb on + strand at 685.386 kb on + strand at 685.387 kb on - strand at 685.392 kb on - strand at 685.392 kb on - strand at 685.392 kb on - strand at 685.491 kb on + strand at 685.492 kb on - strand at 685.547 kb on + strand at 685.561 kb on + strand at 685.561 kb on + strand at 685.561 kb on + strand at 685.562 kb on - strand at 685.565 kb on + strand at 685.565 kb on + strand at 685.565 kb on + strand at 685.566 kb on - strand at 685.610 kb on + strand at 685.611 kb on - strand at 685.611 kb on - strand at 685.617 kb on + strand at 685.617 kb on + strand at 685.618 kb on - strand at 685.618 kb on - strand at 685.709 kb on + strand at 685.709 kb on + strand at 685.710 kb on - strand at 685.711 kb on + strand at 685.711 kb on + strand at 685.711 kb on + strand at 685.712 kb on - strand at 685.712 kb on - strand at 685.712 kb on - strand at 685.750 kb on - strand at 685.769 kb on + strand at 685.769 kb on + strand at 685.769 kb on + strand at 685.770 kb on - strand at 685.770 kb on - strand at 685.770 kb on - strand at 685.770 kb on - strand at 685.812 kb on + strand at 685.821 kb on + strand at 685.822 kb on - strand at 685.825 kb on + strand at 685.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5 remove 683,815 - -2.8 683,980 - OLJFJH_03545 0.20 -0.4 684,018 + OLJFJH_03545 0.26 +3.2 684,096 + OLJFJH_03545 0.40 +0.2 684,098 + OLJFJH_03545 0.40 -0.8 684,099 - OLJFJH_03545 0.40 -0.8 684,138 + OLJFJH_03545 0.47 -0.1 684,139 - OLJFJH_03545 0.47 -1.2 684,277 + OLJFJH_03545 0.70 -0.1 684,324 + OLJFJH_03545 0.78 +0.7 684,337 - OLJFJH_03545 0.81 +0.5 684,337 - OLJFJH_03545 0.81 +0.9 684,337 - OLJFJH_03545 0.81 -0.7 684,551 + -0.3 684,551 + -2.3 684,552 - +1.7 684,552 - -2.1 684,603 - -0.3 684,606 + -0.4 684,607 - +0.9 684,633 + +0.1 684,633 + +1.0 684,634 - -1.0 684,640 - -0.4 684,706 + OLJFJH_03550 0.29 -0.5 684,825 - OLJFJH_03550 0.76 -1.6 684,846 + OLJFJH_03550 0.84 -3.7 684,930 - -1.8 684,941 - -1.8 684,998 + -0.4 685,016 + -0.5 685,017 - +0.4 685,017 - -0.4 685,022 + +2.3 685,022 + -0.5 685,023 - +0.2 685,023 - -0.6 685,087 - OLJFJH_03555 0.42 -2.4 685,147 - OLJFJH_03555 0.81 +0.1 685,155 + OLJFJH_03555 0.86 +0.5 685,155 + OLJFJH_03555 0.86 -0.1 685,156 - OLJFJH_03555 0.87 +0.2 685,200 - -0.7 685,235 - +0.7 685,267 - -2.8 685,272 + -1.6 685,275 + -1.6 685,276 - +0.4 685,276 - -4.0 685,276 - +0.2 685,279 + -0.4 685,373 + -0.1 685,386 + -0.9 685,387 - +0.9 685,392 - +2.0 685,392 - -0.3 685,392 - -0.3 685,491 + -0.7 685,492 - +0.6 685,547 + +2.5 685,561 + +0.0 685,561 + +0.6 685,561 + +0.2 685,562 - -2.8 685,565 + +1.2 685,565 + -0.1 685,565 + -0.8 685,566 - -3.1 685,610 + -0.4 685,611 - +1.5 685,611 - -1.8 685,617 + -0.1 685,617 + -1.5 685,618 - -1.3 685,618 - -0.8 685,709 + +0.4 685,709 + +0.1 685,710 - +0.8 685,711 + -2.2 685,711 + +0.2 685,711 + +1.2 685,712 - -0.3 685,712 - -1.0 685,712 - +0.9 685,750 - +0.9 685,769 + +2.1 685,769 + +0.1 685,769 + +0.2 685,770 - -2.6 685,770 - -0.7 685,770 - -0.9 685,770 - +0.7 685,812 + -2.5 685,821 + -1.3 685,822 - -0.6 685,825 + +2.4 685,826 - +0.7
Or see this region's nucleotide sequence