Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01895 and OLJFJH_01900 are separated by 19 nucleotides OLJFJH_01900 and OLJFJH_01905 are separated by 24 nucleotides
OLJFJH_01895: OLJFJH_01895 - type VI secretion system baseplate subunit TssK, at 336,850 to 338,193
_01895
OLJFJH_01900: OLJFJH_01900 - type VI secretion system lipoprotein TssJ, at 338,213 to 338,725
_01900
OLJFJH_01905: OLJFJH_01905 - SH3 domain-containing protein, at 338,750 to 339,250
_01905
Position (kb) 338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 337.489 kb on - strand, within OLJFJH_01895 at 337.513 kb on - strand, within OLJFJH_01895 at 337.531 kb on + strand, within OLJFJH_01895 at 337.590 kb on - strand, within OLJFJH_01895 at 337.620 kb on + strand, within OLJFJH_01895 at 337.620 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.638 kb on - strand, within OLJFJH_01895 at 337.638 kb on - strand, within OLJFJH_01895 at 337.683 kb on + strand, within OLJFJH_01895 at 337.747 kb on + strand, within OLJFJH_01895 at 337.897 kb on + strand, within OLJFJH_01895 at 337.972 kb on + strand, within OLJFJH_01895 at 337.973 kb on - strand, within OLJFJH_01895 at 338.174 kb on - strand at 338.342 kb on - strand, within OLJFJH_01900 at 338.515 kb on - strand, within OLJFJH_01900 at 338.532 kb on - strand, within OLJFJH_01900 at 338.620 kb on - strand, within OLJFJH_01900 at 338.871 kb on - strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.920 kb on - strand, within OLJFJH_01905 at 338.920 kb on - strand, within OLJFJH_01905 at 339.064 kb on - strand, within OLJFJH_01905 at 339.095 kb on - strand, within OLJFJH_01905 at 339.116 kb on - strand, within OLJFJH_01905 at 339.222 kb on - strand at 339.253 kb on + strand at 339.254 kb on - strand at 339.254 kb on - strand at 339.308 kb on + strand at 339.308 kb on + strand at 339.309 kb on - strand at 339.331 kb on - strand at 339.594 kb on - strand at 339.603 kb on + strand at 339.616 kb on + strand at 339.621 kb on - strand at 339.664 kb on + strand at 339.665 kb on - strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.718 kb on - strand at 339.718 kb on - strand at 339.718 kb on - strand at 339.718 kb on - strand at 339.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5 remove 337,489 - OLJFJH_01895 0.48 -3.0 337,513 - OLJFJH_01895 0.49 -0.6 337,531 + OLJFJH_01895 0.51 +0.1 337,590 - OLJFJH_01895 0.55 -0.9 337,620 + OLJFJH_01895 0.57 -1.5 337,620 + OLJFJH_01895 0.57 -1.1 337,637 + OLJFJH_01895 0.59 -1.1 337,637 + OLJFJH_01895 0.59 -2.0 337,637 + OLJFJH_01895 0.59 -2.2 337,637 + OLJFJH_01895 0.59 -3.4 337,637 + OLJFJH_01895 0.59 -0.8 337,638 - OLJFJH_01895 0.59 +0.9 337,638 - OLJFJH_01895 0.59 -0.3 337,683 + OLJFJH_01895 0.62 -1.3 337,747 + OLJFJH_01895 0.67 -0.7 337,897 + OLJFJH_01895 0.78 -3.0 337,972 + OLJFJH_01895 0.83 -1.4 337,973 - OLJFJH_01895 0.84 +0.6 338,174 - -0.9 338,342 - OLJFJH_01900 0.25 -1.3 338,515 - OLJFJH_01900 0.59 -2.7 338,532 - OLJFJH_01900 0.62 -0.3 338,620 - OLJFJH_01900 0.79 -3.2 338,871 - OLJFJH_01905 0.24 +0.6 338,919 + OLJFJH_01905 0.34 +0.4 338,919 + OLJFJH_01905 0.34 -3.1 338,919 + OLJFJH_01905 0.34 -1.4 338,920 - OLJFJH_01905 0.34 -1.4 338,920 - OLJFJH_01905 0.34 +5.6 339,064 - OLJFJH_01905 0.63 +3.3 339,095 - OLJFJH_01905 0.69 -0.7 339,116 - OLJFJH_01905 0.73 +1.3 339,222 - +1.2 339,253 + -2.7 339,254 - +1.4 339,254 - +0.2 339,308 + +0.4 339,308 + -0.7 339,309 - +4.0 339,331 - -2.1 339,594 - -0.4 339,603 + +0.2 339,616 + -2.8 339,621 - +1.2 339,664 + -2.5 339,665 - -0.6 339,717 + -0.3 339,717 + -0.5 339,717 + -1.2 339,717 + +0.5 339,717 + -2.0 339,717 + -2.4 339,718 - +2.0 339,718 - +0.4 339,718 - +0.3 339,718 - +0.7 339,721 + +0.2
Or see this region's nucleotide sequence