Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01680 and OLJFJH_01685 are separated by 507 nucleotides OLJFJH_01685 and OLJFJH_01690 overlap by 4 nucleotides OLJFJH_01690 and OLJFJH_01695 are separated by 96 nucleotides OLJFJH_01695 and OLJFJH_01700 are separated by 163 nucleotides
OLJFJH_01680: OLJFJH_01680 - membrane-targeted effector domain-containing toxin, at 283,519 to 288,324
_01680
OLJFJH_01685: OLJFJH_01685 - hypothetical protein, at 288,832 to 288,951
_01685
OLJFJH_01690: OLJFJH_01690 - Ferric aerobactin receptor, at 288,948 to 289,592
_01690
OLJFJH_01695: OLJFJH_01695 - Ferric aerobactin receptor Cloacin receptor; Flags:, at 289,689 to 290,330
_01695
OLJFJH_01700: OLJFJH_01700 - hypothetical protein, at 290,494 to 290,700
_01700
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 287.974 kb on + strand at 288.041 kb on - strand at 288.097 kb on - strand at 288.152 kb on + strand at 288.191 kb on + strand at 288.276 kb on + strand at 288.277 kb on - strand at 288.372 kb on - strand at 288.372 kb on - strand at 288.409 kb on + strand at 288.409 kb on + strand at 288.432 kb on - strand at 288.432 kb on - strand at 288.466 kb on + strand at 288.560 kb on - strand at 288.560 kb on - strand at 288.560 kb on - strand at 288.704 kb on + strand at 288.705 kb on - strand at 288.739 kb on - strand at 288.795 kb on - strand at 288.850 kb on - strand, within OLJFJH_01685 at 288.850 kb on - strand, within OLJFJH_01685 at 288.889 kb on + strand, within OLJFJH_01685 at 288.969 kb on + strand at 288.969 kb on + strand at 288.969 kb on + strand at 288.970 kb on - strand at 288.971 kb on + strand at 289.084 kb on - strand, within OLJFJH_01690 at 289.238 kb on - strand, within OLJFJH_01690 at 289.330 kb on - strand, within OLJFJH_01690 at 289.393 kb on - strand, within OLJFJH_01690 at 289.415 kb on - strand, within OLJFJH_01690 at 289.437 kb on + strand, within OLJFJH_01690 at 289.539 kb on + strand at 289.540 kb on - strand at 289.567 kb on + strand at 289.578 kb on - strand at 289.604 kb on + strand at 289.647 kb on + strand at 289.662 kb on + strand at 289.663 kb on - strand at 289.684 kb on - strand at 289.686 kb on - strand at 289.731 kb on - strand at 289.739 kb on - strand at 289.782 kb on + strand, within OLJFJH_01695 at 289.783 kb on - strand, within OLJFJH_01695 at 289.783 kb on - strand, within OLJFJH_01695 at 289.783 kb on - strand, within OLJFJH_01695 at 289.783 kb on - strand, within OLJFJH_01695 at 289.785 kb on - strand, within OLJFJH_01695 at 289.803 kb on + strand, within OLJFJH_01695 at 289.835 kb on + strand, within OLJFJH_01695 at 289.835 kb on + strand, within OLJFJH_01695 at 289.905 kb on + strand, within OLJFJH_01695 at 289.947 kb on - strand, within OLJFJH_01695 at 289.947 kb on - strand, within OLJFJH_01695 at 290.174 kb on + strand, within OLJFJH_01695 at 290.174 kb on + strand, within OLJFJH_01695 at 290.174 kb on + strand, within OLJFJH_01695 at 290.208 kb on + strand, within OLJFJH_01695 at 290.209 kb on - strand, within OLJFJH_01695 at 290.245 kb on - strand, within OLJFJH_01695 at 290.245 kb on - strand, within OLJFJH_01695 at 290.256 kb on + strand, within OLJFJH_01695 at 290.280 kb on + strand at 290.280 kb on + strand at 290.280 kb on + strand at 290.281 kb on - strand at 290.281 kb on - strand at 290.281 kb on - strand at 290.281 kb on - strand at 290.282 kb on + strand at 290.297 kb on + strand at 290.314 kb on - strand at 290.331 kb on + strand at 290.332 kb on - strand at 290.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5 remove 287,974 + +0.1 288,041 - +0.8 288,097 - -0.8 288,152 + +1.2 288,191 + +1.4 288,276 + +0.3 288,277 - +0.5 288,372 - +0.1 288,372 - +0.2 288,409 + +0.7 288,409 + +0.7 288,432 - +0.4 288,432 - +0.6 288,466 + +0.4 288,560 - -1.7 288,560 - -1.5 288,560 - -1.7 288,704 + -0.2 288,705 - +2.5 288,739 - -0.9 288,795 - -0.1 288,850 - OLJFJH_01685 0.15 +1.0 288,850 - OLJFJH_01685 0.15 -0.8 288,889 + OLJFJH_01685 0.47 +2.8 288,969 + -0.3 288,969 + +0.6 288,969 + -0.0 288,970 - +0.7 288,971 + -2.2 289,084 - OLJFJH_01690 0.21 -0.9 289,238 - OLJFJH_01690 0.45 -2.0 289,330 - OLJFJH_01690 0.59 -0.3 289,393 - OLJFJH_01690 0.69 -3.3 289,415 - OLJFJH_01690 0.72 -1.0 289,437 + OLJFJH_01690 0.76 -1.2 289,539 + +0.2 289,540 - +0.5 289,567 + -0.9 289,578 - -0.8 289,604 + +2.6 289,647 + -2.0 289,662 + -0.8 289,663 - +0.8 289,684 - +0.2 289,686 - -0.7 289,731 - -0.1 289,739 - -0.8 289,782 + OLJFJH_01695 0.14 -1.2 289,783 - OLJFJH_01695 0.15 -1.2 289,783 - OLJFJH_01695 0.15 -1.7 289,783 - OLJFJH_01695 0.15 -0.2 289,783 - OLJFJH_01695 0.15 -1.3 289,785 - OLJFJH_01695 0.15 +2.0 289,803 + OLJFJH_01695 0.18 -0.3 289,835 + OLJFJH_01695 0.23 -0.8 289,835 + OLJFJH_01695 0.23 +1.1 289,905 + OLJFJH_01695 0.34 -1.0 289,947 - OLJFJH_01695 0.40 -0.6 289,947 - OLJFJH_01695 0.40 +1.4 290,174 + OLJFJH_01695 0.76 -2.1 290,174 + OLJFJH_01695 0.76 -0.0 290,174 + OLJFJH_01695 0.76 -1.5 290,208 + OLJFJH_01695 0.81 -2.6 290,209 - OLJFJH_01695 0.81 +0.2 290,245 - OLJFJH_01695 0.87 +2.0 290,245 - OLJFJH_01695 0.87 -1.7 290,256 + OLJFJH_01695 0.88 -0.8 290,280 + +2.6 290,280 + -2.7 290,280 + -0.3 290,281 - +0.0 290,281 - -0.6 290,281 - +0.6 290,281 - -3.0 290,282 + +3.3 290,297 + +0.2 290,314 - -2.3 290,331 + -2.3 290,332 - -1.3 290,512 + -2.3
Or see this region's nucleotide sequence