Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04215 and A4249_RS04220 are separated by 39 nucleotides A4249_RS04220 and A4249_RS16505 are separated by 15 nucleotides A4249_RS16505 and A4249_RS04225 are separated by 25 nucleotides
A4249_RS04215: A4249_RS04215 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 872,469 to 873,044
_RS04215
A4249_RS04220: A4249_RS04220 - low molecular weight phosphotyrosine protein phosphatase, at 873,084 to 873,536
_RS04220
A4249_RS16505: A4249_RS16505 - SEC-C metal-binding domain-containing protein, at 873,552 to 874,682
_RS16505
A4249_RS04225: A4249_RS04225 - DNA mismatch repair endonuclease MutL, at 874,708 to 876,600
_RS04225
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.628 kb on + strand, within A4249_RS04215 at 872.628 kb on + strand, within A4249_RS04215 at 872.628 kb on + strand, within A4249_RS04215 at 872.742 kb on + strand, within A4249_RS04215 at 872.743 kb on - strand, within A4249_RS04215 at 872.970 kb on + strand, within A4249_RS04215 at 872.994 kb on + strand at 872.994 kb on + strand at 872.995 kb on - strand at 873.085 kb on + strand at 873.085 kb on + strand at 873.085 kb on + strand at 873.085 kb on + strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.164 kb on - strand, within A4249_RS04220 at 873.164 kb on - strand, within A4249_RS04220 at 873.164 kb on - strand, within A4249_RS04220 at 873.525 kb on + strand at 873.525 kb on + strand at 873.526 kb on - strand at 873.526 kb on - strand at 873.526 kb on - strand at 873.526 kb on - strand at 873.526 kb on - strand at 873.553 kb on + strand at 873.553 kb on + strand at 873.574 kb on - strand at 873.607 kb on - strand at 873.607 kb on - strand at 873.607 kb on - strand at 873.608 kb on - strand at 873.610 kb on + strand at 873.610 kb on + strand at 873.610 kb on + strand at 873.611 kb on - strand at 873.611 kb on - strand at 873.611 kb on - strand at 873.611 kb on - strand at 873.813 kb on + strand, within A4249_RS16505 at 873.814 kb on - strand, within A4249_RS16505 at 873.814 kb on - strand, within A4249_RS16505 at 873.912 kb on + strand, within A4249_RS16505 at 874.209 kb on + strand, within A4249_RS16505 at 874.219 kb on + strand, within A4249_RS16505 at 874.402 kb on + strand, within A4249_RS16505 at 874.464 kb on + strand, within A4249_RS16505 at 874.512 kb on + strand, within A4249_RS16505 at 874.513 kb on - strand, within A4249_RS16505 at 874.603 kb on + strand at 874.629 kb on + strand at 874.629 kb on + strand at 874.629 kb on + strand at 874.630 kb on - strand at 874.630 kb on - strand at 874.630 kb on - strand at 874.630 kb on - strand at 874.667 kb on + strand at 874.667 kb on + strand at 874.667 kb on + strand at 874.667 kb on + strand at 874.667 kb on + strand at 874.667 kb on + strand at 874.668 kb on - strand at 874.668 kb on - strand at 874.668 kb on - strand at 874.674 kb on + strand at 874.674 kb on + strand at 874.674 kb on + strand at 874.674 kb on + strand at 874.675 kb on - strand at 874.675 kb on - strand at 874.675 kb on - strand at 874.678 kb on + strand at 874.696 kb on + strand at 874.696 kb on + strand at 874.696 kb on + strand at 874.697 kb on - strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.757 kb on + strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 874.758 kb on - strand at 875.101 kb on + strand, within A4249_RS04225 at 875.101 kb on + strand, within A4249_RS04225 at 875.101 kb on + strand, within A4249_RS04225 at 875.102 kb on - strand, within A4249_RS04225 at 875.102 kb on - strand, within A4249_RS04225 at 875.102 kb on - strand, within A4249_RS04225 at 875.177 kb on + strand, within A4249_RS04225 at 875.177 kb on + strand, within A4249_RS04225 at 875.177 kb on + strand, within A4249_RS04225 at 875.177 kb on + strand, within A4249_RS04225 at 875.177 kb on + strand, within A4249_RS04225 at 875.177 kb on + strand, within A4249_RS04225 at 875.178 kb on - strand, within A4249_RS04225 at 875.178 kb on - strand, within A4249_RS04225 at 875.178 kb on - strand, within A4249_RS04225 at 875.178 kb on - strand, within A4249_RS04225 at 875.244 kb on + strand, within A4249_RS04225 at 875.244 kb on + strand, within A4249_RS04225 at 875.244 kb on + strand, within A4249_RS04225 at 875.244 kb on + strand, within A4249_RS04225 at 875.245 kb on - strand, within A4249_RS04225 at 875.245 kb on - strand, within A4249_RS04225 at 875.245 kb on - strand, within A4249_RS04225 at 875.245 kb on - strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.246 kb on + strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.247 kb on - strand, within A4249_RS04225 at 875.504 kb on + strand, within A4249_RS04225 at 875.504 kb on + strand, within A4249_RS04225 at 875.505 kb on - strand, within A4249_RS04225 at 875.505 kb on - strand, within A4249_RS04225
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 872,628 + A4249_RS04215 0.28 -0.3 872,628 + A4249_RS04215 0.28 +0.2 872,628 + A4249_RS04215 0.28 -2.6 872,742 + A4249_RS04215 0.47 -1.0 872,743 - A4249_RS04215 0.48 +0.6 872,970 + A4249_RS04215 0.87 -0.1 872,994 + -1.4 872,994 + +0.3 872,995 - +0.0 873,085 + -0.1 873,085 + +1.2 873,085 + -0.7 873,085 + -1.0 873,086 - +0.3 873,086 - -0.7 873,086 - -0.9 873,086 - +0.8 873,086 - -0.6 873,086 - +0.0 873,164 - A4249_RS04220 0.18 -0.5 873,164 - A4249_RS04220 0.18 +0.2 873,164 - A4249_RS04220 0.18 -1.3 873,525 + -0.1 873,525 + +0.4 873,526 - +0.7 873,526 - +1.6 873,526 - +0.1 873,526 - -0.5 873,526 - -0.9 873,553 + -1.5 873,553 + +0.8 873,574 - +0.4 873,607 - +0.0 873,607 - -1.0 873,607 - -0.0 873,608 - -0.1 873,610 + -1.2 873,610 + -1.3 873,610 + +0.8 873,611 - +2.5 873,611 - -0.8 873,611 - -0.1 873,611 - +0.9 873,813 + A4249_RS16505 0.23 +1.0 873,814 - A4249_RS16505 0.23 -0.5 873,814 - A4249_RS16505 0.23 +1.7 873,912 + A4249_RS16505 0.32 -0.2 874,209 + A4249_RS16505 0.58 +0.1 874,219 + A4249_RS16505 0.59 +1.0 874,402 + A4249_RS16505 0.75 +0.5 874,464 + A4249_RS16505 0.81 -1.2 874,512 + A4249_RS16505 0.85 -0.3 874,513 - A4249_RS16505 0.85 +0.5 874,603 + -0.4 874,629 + +1.2 874,629 + -0.3 874,629 + -0.5 874,630 - +2.2 874,630 - +0.4 874,630 - -1.4 874,630 - +0.5 874,667 + +0.8 874,667 + -0.2 874,667 + +0.5 874,667 + +1.5 874,667 + -0.1 874,667 + +2.2 874,668 - -0.7 874,668 - -0.8 874,668 - +1.3 874,674 + +0.7 874,674 + -0.4 874,674 + -1.6 874,674 + -0.7 874,675 - -1.5 874,675 - -0.5 874,675 - -0.7 874,678 + +0.1 874,696 + -1.3 874,696 + +0.7 874,696 + -0.5 874,697 - +0.2 874,757 + -0.9 874,757 + -0.2 874,757 + +0.3 874,757 + +0.0 874,757 + -0.6 874,757 + -0.3 874,757 + -1.3 874,757 + -1.0 874,757 + +0.8 874,757 + +0.1 874,757 + -0.0 874,757 + +0.1 874,757 + +0.2 874,757 + +0.7 874,757 + +0.6 874,757 + -0.4 874,757 + +1.4 874,757 + -0.7 874,757 + -0.7 874,757 + -0.3 874,757 + +0.2 874,757 + +1.1 874,758 - -0.2 874,758 - -0.8 874,758 - +0.2 874,758 - -0.7 874,758 - +1.5 874,758 - +0.3 874,758 - -1.1 874,758 - +0.1 874,758 - -1.3 874,758 - -0.1 874,758 - -0.2 874,758 - +0.8 874,758 - -0.3 874,758 - +0.4 874,758 - +1.0 874,758 - +0.3 874,758 - +0.2 875,101 + A4249_RS04225 0.21 +0.2 875,101 + A4249_RS04225 0.21 -1.0 875,101 + A4249_RS04225 0.21 -0.9 875,102 - A4249_RS04225 0.21 -2.2 875,102 - A4249_RS04225 0.21 -0.0 875,102 - A4249_RS04225 0.21 +0.9 875,177 + A4249_RS04225 0.25 +0.9 875,177 + A4249_RS04225 0.25 -0.6 875,177 + A4249_RS04225 0.25 +0.2 875,177 + A4249_RS04225 0.25 +0.7 875,177 + A4249_RS04225 0.25 +0.3 875,177 + A4249_RS04225 0.25 -0.2 875,178 - A4249_RS04225 0.25 -2.3 875,178 - A4249_RS04225 0.25 +0.0 875,178 - A4249_RS04225 0.25 -2.9 875,178 - A4249_RS04225 0.25 +0.5 875,244 + A4249_RS04225 0.28 +0.6 875,244 + A4249_RS04225 0.28 -0.4 875,244 + A4249_RS04225 0.28 -0.2 875,244 + A4249_RS04225 0.28 -1.0 875,245 - A4249_RS04225 0.28 -1.7 875,245 - A4249_RS04225 0.28 -1.8 875,245 - A4249_RS04225 0.28 +0.7 875,245 - A4249_RS04225 0.28 -1.9 875,246 + A4249_RS04225 0.28 -0.0 875,246 + A4249_RS04225 0.28 -0.5 875,246 + A4249_RS04225 0.28 -1.5 875,246 + A4249_RS04225 0.28 +0.8 875,246 + A4249_RS04225 0.28 +1.0 875,246 + A4249_RS04225 0.28 +1.8 875,246 + A4249_RS04225 0.28 -0.3 875,246 + A4249_RS04225 0.28 +1.1 875,246 + A4249_RS04225 0.28 -1.0 875,246 + A4249_RS04225 0.28 +0.5 875,246 + A4249_RS04225 0.28 +0.2 875,246 + A4249_RS04225 0.28 -1.0 875,246 + A4249_RS04225 0.28 +1.0 875,246 + A4249_RS04225 0.28 -0.4 875,246 + A4249_RS04225 0.28 +0.5 875,247 - A4249_RS04225 0.28 -0.5 875,247 - A4249_RS04225 0.28 -0.3 875,247 - A4249_RS04225 0.28 +0.1 875,247 - A4249_RS04225 0.28 +1.2 875,247 - A4249_RS04225 0.28 +1.5 875,247 - A4249_RS04225 0.28 -0.4 875,247 - A4249_RS04225 0.28 +1.8 875,247 - A4249_RS04225 0.28 +0.4 875,247 - A4249_RS04225 0.28 -0.8 875,247 - A4249_RS04225 0.28 -0.3 875,247 - A4249_RS04225 0.28 -1.3 875,247 - A4249_RS04225 0.28 +1.5 875,247 - A4249_RS04225 0.28 +0.4 875,247 - A4249_RS04225 0.28 +1.5 875,247 - A4249_RS04225 0.28 +0.9 875,247 - A4249_RS04225 0.28 +1.6 875,247 - A4249_RS04225 0.28 -0.2 875,247 - A4249_RS04225 0.28 +0.0 875,247 - A4249_RS04225 0.28 +0.3 875,247 - A4249_RS04225 0.28 -0.7 875,247 - A4249_RS04225 0.28 +0.0 875,247 - A4249_RS04225 0.28 -0.6 875,247 - A4249_RS04225 0.28 -0.8 875,247 - A4249_RS04225 0.28 -1.3 875,247 - A4249_RS04225 0.28 +0.9 875,247 - A4249_RS04225 0.28 +0.1 875,247 - A4249_RS04225 0.28 +0.5 875,247 - A4249_RS04225 0.28 +0.3 875,247 - A4249_RS04225 0.28 -2.3 875,247 - A4249_RS04225 0.28 -0.2 875,247 - A4249_RS04225 0.28 -0.1 875,247 - A4249_RS04225 0.28 -1.8 875,247 - A4249_RS04225 0.28 +0.7 875,247 - A4249_RS04225 0.28 +0.5 875,247 - A4249_RS04225 0.28 +0.0 875,504 + A4249_RS04225 0.42 +1.2 875,504 + A4249_RS04225 0.42 -1.5 875,505 - A4249_RS04225 0.42 +1.0 875,505 - A4249_RS04225 0.42 -0.2
Or see this region's nucleotide sequence