Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15250

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15240 and A4249_RS15245 are separated by 22 nucleotidesA4249_RS15245 and A4249_RS15250 overlap by 4 nucleotidesA4249_RS15250 and A4249_RS15255 are separated by 91 nucleotidesA4249_RS15255 and A4249_RS15260 are separated by 96 nucleotides A4249_RS15240: A4249_RS15240 - response regulator, at 3,083,902 to 3,085,953 _RS15240 A4249_RS15245: A4249_RS15245 - protein-glutamate O-methyltransferase CheR, at 3,085,976 to 3,086,791 _RS15245 A4249_RS15250: A4249_RS15250 - response regulator, at 3,086,788 to 3,087,165 _RS15250 A4249_RS15255: A4249_RS15255 - histidine phosphotransferase family protein, at 3,087,257 to 3,087,928 _RS15255 A4249_RS15260: A4249_RS15260 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,088,025 to 3,088,852 _RS15260 Position (kb) 3086 3087 3088Strain fitness (log2 ratio) -2 -1 0 1at 3086.013 kb on + strandat 3086.013 kb on + strandat 3086.013 kb on + strandat 3086.013 kb on + strandat 3086.013 kb on + strandat 3086.014 kb on - strandat 3086.014 kb on - strandat 3086.014 kb on - strandat 3086.014 kb on - strandat 3086.014 kb on - strandat 3086.014 kb on - strandat 3086.345 kb on - strand, within A4249_RS15245at 3086.345 kb on - strand, within A4249_RS15245at 3086.346 kb on + strand, within A4249_RS15245at 3086.346 kb on + strand, within A4249_RS15245at 3086.346 kb on + strand, within A4249_RS15245at 3086.346 kb on + strand, within A4249_RS15245at 3086.346 kb on + strand, within A4249_RS15245at 3086.346 kb on + strand, within A4249_RS15245at 3086.347 kb on - strand, within A4249_RS15245at 3086.347 kb on - strand, within A4249_RS15245at 3086.858 kb on + strand, within A4249_RS15250at 3086.858 kb on + strand, within A4249_RS15250at 3086.858 kb on + strand, within A4249_RS15250at 3086.858 kb on + strand, within A4249_RS15250at 3086.859 kb on - strand, within A4249_RS15250at 3086.859 kb on - strand, within A4249_RS15250at 3086.859 kb on - strand, within A4249_RS15250at 3086.859 kb on - strand, within A4249_RS15250at 3086.859 kb on - strand, within A4249_RS15250at 3087.041 kb on + strand, within A4249_RS15250at 3087.041 kb on + strand, within A4249_RS15250at 3087.041 kb on + strand, within A4249_RS15250at 3087.041 kb on + strand, within A4249_RS15250at 3087.041 kb on + strand, within A4249_RS15250at 3087.042 kb on - strand, within A4249_RS15250at 3087.042 kb on - strand, within A4249_RS15250at 3087.083 kb on + strand, within A4249_RS15250at 3087.219 kb on + strandat 3087.219 kb on + strandat 3087.220 kb on - strandat 3087.235 kb on + strandat 3087.235 kb on + strandat 3087.236 kb on - strandat 3087.236 kb on - strandat 3088.013 kb on - strandat 3088.013 kb on - strandat 3088.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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3,086,013 + -0.3
3,086,013 + +0.8
3,086,013 + +0.1
3,086,013 + +0.2
3,086,013 + +0.4
3,086,014 - -0.7
3,086,014 - -1.8
3,086,014 - +0.2
3,086,014 - -1.6
3,086,014 - -0.1
3,086,014 - +0.5
3,086,345 - A4249_RS15245 0.45 -0.8
3,086,345 - A4249_RS15245 0.45 +1.3
3,086,346 + A4249_RS15245 0.45 +0.3
3,086,346 + A4249_RS15245 0.45 -0.3
3,086,346 + A4249_RS15245 0.45 -0.0
3,086,346 + A4249_RS15245 0.45 +1.0
3,086,346 + A4249_RS15245 0.45 -0.3
3,086,346 + A4249_RS15245 0.45 +0.7
3,086,347 - A4249_RS15245 0.45 +1.1
3,086,347 - A4249_RS15245 0.45 -0.1
3,086,858 + A4249_RS15250 0.19 +0.3
3,086,858 + A4249_RS15250 0.19 +0.0
3,086,858 + A4249_RS15250 0.19 +0.2
3,086,858 + A4249_RS15250 0.19 -0.0
3,086,859 - A4249_RS15250 0.19 -0.3
3,086,859 - A4249_RS15250 0.19 +0.8
3,086,859 - A4249_RS15250 0.19 +0.3
3,086,859 - A4249_RS15250 0.19 +0.9
3,086,859 - A4249_RS15250 0.19 -0.2
3,087,041 + A4249_RS15250 0.67 +0.5
3,087,041 + A4249_RS15250 0.67 -1.0
3,087,041 + A4249_RS15250 0.67 +0.1
3,087,041 + A4249_RS15250 0.67 -0.4
3,087,041 + A4249_RS15250 0.67 +1.2
3,087,042 - A4249_RS15250 0.67 -0.5
3,087,042 - A4249_RS15250 0.67 -0.3
3,087,083 + A4249_RS15250 0.78 -0.7
3,087,219 + +1.1
3,087,219 + +0.5
3,087,220 - +0.1
3,087,235 + +0.1
3,087,235 + +0.2
3,087,236 - +0.3
3,087,236 - -0.0
3,088,013 - +1.1
3,088,013 - +1.7
3,088,013 - -1.2

Or see this region's nucleotide sequence