Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15240 and A4249_RS15245 are separated by 22 nucleotides A4249_RS15245 and A4249_RS15250 overlap by 4 nucleotides A4249_RS15250 and A4249_RS15255 are separated by 91 nucleotides A4249_RS15255 and A4249_RS15260 are separated by 96 nucleotides
A4249_RS15240: A4249_RS15240 - response regulator, at 3,083,902 to 3,085,953
_RS15240
A4249_RS15245: A4249_RS15245 - protein-glutamate O-methyltransferase CheR, at 3,085,976 to 3,086,791
_RS15245
A4249_RS15250: A4249_RS15250 - response regulator, at 3,086,788 to 3,087,165
_RS15250
A4249_RS15255: A4249_RS15255 - histidine phosphotransferase family protein, at 3,087,257 to 3,087,928
_RS15255
A4249_RS15260: A4249_RS15260 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,088,025 to 3,088,852
_RS15260
Position (kb)
3086
3087
3088 Strain fitness (log2 ratio)
-2
-1
0
1 at 3086.013 kb on + strand at 3086.013 kb on + strand at 3086.013 kb on + strand at 3086.013 kb on + strand at 3086.013 kb on + strand at 3086.014 kb on - strand at 3086.014 kb on - strand at 3086.014 kb on - strand at 3086.014 kb on - strand at 3086.014 kb on - strand at 3086.014 kb on - strand at 3086.345 kb on - strand, within A4249_RS15245 at 3086.345 kb on - strand, within A4249_RS15245 at 3086.346 kb on + strand, within A4249_RS15245 at 3086.346 kb on + strand, within A4249_RS15245 at 3086.346 kb on + strand, within A4249_RS15245 at 3086.346 kb on + strand, within A4249_RS15245 at 3086.346 kb on + strand, within A4249_RS15245 at 3086.346 kb on + strand, within A4249_RS15245 at 3086.347 kb on - strand, within A4249_RS15245 at 3086.347 kb on - strand, within A4249_RS15245 at 3086.858 kb on + strand, within A4249_RS15250 at 3086.858 kb on + strand, within A4249_RS15250 at 3086.858 kb on + strand, within A4249_RS15250 at 3086.858 kb on + strand, within A4249_RS15250 at 3086.859 kb on - strand, within A4249_RS15250 at 3086.859 kb on - strand, within A4249_RS15250 at 3086.859 kb on - strand, within A4249_RS15250 at 3086.859 kb on - strand, within A4249_RS15250 at 3086.859 kb on - strand, within A4249_RS15250 at 3087.041 kb on + strand, within A4249_RS15250 at 3087.041 kb on + strand, within A4249_RS15250 at 3087.041 kb on + strand, within A4249_RS15250 at 3087.041 kb on + strand, within A4249_RS15250 at 3087.041 kb on + strand, within A4249_RS15250 at 3087.042 kb on - strand, within A4249_RS15250 at 3087.042 kb on - strand, within A4249_RS15250 at 3087.083 kb on + strand, within A4249_RS15250 at 3087.219 kb on + strand at 3087.219 kb on + strand at 3087.220 kb on - strand at 3087.235 kb on + strand at 3087.235 kb on + strand at 3087.236 kb on - strand at 3087.236 kb on - strand at 3088.013 kb on - strand at 3088.013 kb on - strand at 3088.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 3,086,013 + -0.3 3,086,013 + +0.8 3,086,013 + +0.1 3,086,013 + +0.2 3,086,013 + +0.4 3,086,014 - -0.7 3,086,014 - -1.8 3,086,014 - +0.2 3,086,014 - -1.6 3,086,014 - -0.1 3,086,014 - +0.5 3,086,345 - A4249_RS15245 0.45 -0.8 3,086,345 - A4249_RS15245 0.45 +1.3 3,086,346 + A4249_RS15245 0.45 +0.3 3,086,346 + A4249_RS15245 0.45 -0.3 3,086,346 + A4249_RS15245 0.45 -0.0 3,086,346 + A4249_RS15245 0.45 +1.0 3,086,346 + A4249_RS15245 0.45 -0.3 3,086,346 + A4249_RS15245 0.45 +0.7 3,086,347 - A4249_RS15245 0.45 +1.1 3,086,347 - A4249_RS15245 0.45 -0.1 3,086,858 + A4249_RS15250 0.19 +0.3 3,086,858 + A4249_RS15250 0.19 +0.0 3,086,858 + A4249_RS15250 0.19 +0.2 3,086,858 + A4249_RS15250 0.19 -0.0 3,086,859 - A4249_RS15250 0.19 -0.3 3,086,859 - A4249_RS15250 0.19 +0.8 3,086,859 - A4249_RS15250 0.19 +0.3 3,086,859 - A4249_RS15250 0.19 +0.9 3,086,859 - A4249_RS15250 0.19 -0.2 3,087,041 + A4249_RS15250 0.67 +0.5 3,087,041 + A4249_RS15250 0.67 -1.0 3,087,041 + A4249_RS15250 0.67 +0.1 3,087,041 + A4249_RS15250 0.67 -0.4 3,087,041 + A4249_RS15250 0.67 +1.2 3,087,042 - A4249_RS15250 0.67 -0.5 3,087,042 - A4249_RS15250 0.67 -0.3 3,087,083 + A4249_RS15250 0.78 -0.7 3,087,219 + +1.1 3,087,219 + +0.5 3,087,220 - +0.1 3,087,235 + +0.1 3,087,235 + +0.2 3,087,236 - +0.3 3,087,236 - -0.0 3,088,013 - +1.1 3,088,013 - +1.7 3,088,013 - -1.2
Or see this region's nucleotide sequence